Oliver Rupp
PEVZ-ID
23 Publikationen
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2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957996Wibberg D, Genzel F, Verwaaijen B, Blom J, Rupp O, Goesmann A, Zrenner R, Grosch R, Pühler A, Schlüter A (2021)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Genome Analyses of the Less Aggressive Rhizoctonia solani AG1-IB Isolates 1/2/21 and O8/2 Compared to the Reference AG1-IB Isolate 7/3/14.
Journal of Fungi 7(10): 832. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900131Pauli M, Chakarov N, Rupp O, Kalinowski J, Goesmann A, Sorenson M, Krüger O, Hoffman J (2015)PUB | PDF | DOI | WoS | PubMed | Europe PMC
De novo assembly of the dual transcriptomes of a polymorphic raptor species and its malarial parasite.
BMC Genomics 16(1): 1038. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2782605Rupp O, Brinkrolf K, Buerth C, Kunigo M, Schneider J, Jaenicke S, Goesmann A, Pühler A, Jaeger K-E, Ernst JF (2015)PUB | DOI | WoS | PubMed | Europe PMC
The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms.
Journal of Biotechnology 211: 20-30. -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2718773Wippermann A, Rupp O, Brinkrolf K, Hoffrogge R, Noll T (2015)PUB | DOI | WoS | PubMed | Europe PMC
The DNA methylation landscape of Chinese hamster ovary (CHO) DP-12 cells.
Journal of Biotechnology 199: 38-46. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2633946Caspers B, Krause ET, Hendrix R, Kopp M, Rupp O, Rosentreter K, Steinfartz S (2014)PUB | DOI | WoS | PubMed | Europe PMC
The more the better - polyandry and genetic similarity are positively linked to reproductive success in a natural population of terrestrial salamanders (Salamandra salamandra).
Molecular Ecology 23(1): 239-250. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656819Wippermann A, Klausing S, Rupp O, Albaum S, Büntemeyer H, Noll T, Hoffrogge R (2014)PUB | DOI | WoS | PubMed | Europe PMC
Establishment of a CpG island microarray for analyses of genome-wide DNA methylation in Chinese hamster ovary cells.
Applied Microbiology and Biotechnology 98(2): 579-589. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643946Dohm JC, Minoche AE, Holtgräwe D, Capella-Gutiérrez S, Zakrzewski F, Tafer H, Rupp O, Rosleff Sörensen T, Stracke R, Reinhardt R, Goesmann A, Kraft T, Schulz B, Stadler PF, Schmidt T, Gabaldón T, Lehrach H, Weisshaar B, Himmelbauer H (2014)PUB | DOI | WoS | PubMed | Europe PMC
The genome of the recently domesticated crop plant sugar beet (Beta vulgaris).
Nature 505(7484): 546-549. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676552Becker J, Timmermann C, Rupp O, Albaum S, Brinkrolf K, Goesmann A, Pühler A, Tauch A, Noll T (2014)PUB | DOI | WoS | PubMed | Europe PMC
Transcriptome analyses of CHO cells with the next-generation microarray CHO41K: Development and validation by analysing the influence of the growth stimulating substance IGF-1 substitute LongR(3.).
Journal of biotechnology 178: 23-31. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656773Rupp O, Becker J, Brinkrolf K, Timmermann C, Borth N, Pühler A, Noll T, Goesmann A (2014)PUB | DOI | WoS | PubMed | Europe PMC
Construction of a Public CHO Cell Line Transcript Database Using Versatile Bioinformatics Analysis Pipelines.
PLoS ONE 9(1): e85568. -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693310Wibberg D, Jelonek L, Rupp O, Kröber M, Goesmann A, Grosch R, Pühler A, Schlüter A (2014)PUB | DOI | WoS | PubMed | Europe PMC
Transcriptome analysis of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 applying high-throughput sequencing of expressed sequence tags (ESTs).
Fungal Biology 118(9-10): 800-813. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2634909Drechsler A, Geller D, Freund K, Schmeller DS, Künzel S, Rupp O, Loyau A, Denoël M, Valbuena-Ureña E, Steinfartz S (2013)PUB | PDF | DOI | WoS | PubMed | Europe PMC
What remains from a 454 run: estimation of success rates of microsatellite loci development in selected newt species (Calotriton asper, Lissotriton helveticus, and Triturus cristatus) and comparison with Illumina-based approaches.
Ecology and Evolution 3(11): 3947-3957. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2549908Wibberg D, Jelonek L, Rupp O, Kröber M, Eikmeyer FG, Goesmann A, Hartmann A, Borriss R, Grosch R, Pühler A, Schlüter A (2013)PUB | DOI | WoS | PubMed | Europe PMC
Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14.
Journal of Biotechnology 167(2): 142-155. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2606943Vences M, Hauswaldt S, Steinfartz S, Rupp O, Goesmann A, Künzel S, Orozco-Terwengel P, Vieites DR, Nieto-Roman S, Haas S, Laugsch C, Gehara M, Bruchmann S, Pabijan M, Ludewig A-K, Rudert D, Angelini C, Borkin LJ, Crochet P-A, Crottini A, Dubois A, Ficetola GF, Galán P, Geniez P, Hachtel M, Jovanovic O, Litvinchuk SN, Lymberakis P, Ohler A, Smirnov NA (2013)PUB | DOI | WoS | PubMed | Europe PMC
Radically different phylogeographies and patterns of genetic variation in two European brown frogs, genus Rana.
Molecular phylogenetics and evolution 68(3): 657-670. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2615581Brinkrolf K, Rupp O, Laux H, Kollin F, Ernst W, Linke B, Kofler R, Romand S, Hesse F, Budach WE, Galosy S, Müller D, Noll T, Wienberg J, Jostock T, Leonard M, Grillari J, Tauch A, Goesmann A, Helk B, Mott JE, Pühler A, Borth N (2013)PUB | DOI | WoS | PubMed | Europe PMC
Chinese hamster genome sequenced from sorted chromosomes.
Nature Biotechnology 31(8): 694-695. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645668Bogen C, Al-Dilaimi A, Albersmeier A, Wichmann J, Grundmann M, Rupp O, Lauersen KJ, Blifernez-Klassen O, Kalinowski J, Goesmann A, Mussgnug JH, Kruse O (2013)PUB | PDF | DOI | WoS | PubMed | Europe PMC
Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
BMC Genomics 14(1): 926. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202Zakrzewski M, Bekel T, Ander C, Pühler A, Rupp O, Stoye J, Schlüter A, Goesmann A (2013)PUB | DOI | WoS | PubMed | Europe PMC
MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets.
Journal of Biotechnology 167(2): 156-165. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501364Meleady P, Hoffrogge R, Henry M, Rupp O, Bort JH, Clarke C, Brinkrolf K, Kelly S, Müller B, Doolan P, Hackl M, Beckmann T, Noll T, Grillari J, Barron N, Pühler A, Clynes M, Borth N (2012)PUB | DOI | WoS | PubMed | Europe PMC
Utilization and evaluation of CHO-specific sequence databases for mass spectrometry based proteomics.
Biotechnology and Bioengineering 109(6): 1386-1394. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2474002Schneider J, Rupp O, Trost E, Jaenicke S, Passoth V, Goesmann A, Tauch A, Brinkrolf K (2012)PUB | DOI | WoS | PubMed | Europe PMC
Genome sequence of Wickerhamomyces anomalus DSM 6766 reveals genetic basis of biotechnologically important antimicrobial activities.
FEMS Yeast Research 12(3): 382-386. -
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2478526Hackl M, Jadhav V, Jakobi T, Rupp O, Brinkrolf K, Goesmann A, Pühler A, Noll T, Borth N, Grillari J (2012)PUB | DOI | WoS | PubMed | Europe PMC
Computational identification of microRNA gene loci and precursor microRNA sequences in CHO cell lines.
Journal of Biotechnology 158(3): 151-155. -
2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2453768Becker J, Timmermann C, Jakobi T, Rupp O, Szczepanowski R, Hackl M, Goesmann A, Tauch A, Borth N, Grillari J, Pühler A, Noll T, Brinkrolf K (2011)PUB | DOI
Next-generation sequencing of the CHO cell transcriptome.
BMC Proceedings 5(Suppl. 8): P6. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731Wibberg D, Blom J, Jaenicke S, Kollin F, Rupp O, Scharf B, Schneiker-Bekel S, Szczepanowski R, Goesmann A, Setubal JC, Schmitt R, Pühler A, Schlüter A (2011)PUB | DOI | WoS | PubMed | Europe PMC
Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid.
Journal of Biotechnology 155(1): 50-62. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396576Becker J, Hackel M, Jakobi T, Rupp O, Schneider J, Szczepanowski R, Bekel T, Borth N, Goesmann A, Grillari J, Kaltschmidt C, Noll T, Pühler A, Tauch A, Brinkrolf K (2011)PUB | DOI | WoS | PubMed | Europe PMC
Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing.
Journal of Biotechnology 156(3): 227-235. -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447Bekel T, Henckel K, Küster H, Meyer F, Mittard-Runte V, Neuweger H, Paarmann D, Rupp O, Zakrzewski M, Pühler A, Stoye J, Goesmann A (2009)PUB | DOI | WoS | PubMed | Europe PMC
The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies.
Journal of Biotechnology 140(1-2): 3-12.