41 Publikationen
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2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2964311Tzanakis, K., Nattkemper, T. W., Niehaus, K., and Albaum, S. (2022). MetHoS: a platform for large-scale processing, storage and analysis of metabolomics data. BMC Bioinformatics 23:267.PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965966Paggi, R. A., Albaum, S., Poetsch, A., and Cerletti, M. (2022). Proteome Turnover Analysis in Haloferax volcanii by a Heavy Isotope Multilabeling Approach. Methods in Molecular Biology 2522, 267-286.PUB | DOI | PubMed | Europe PMC
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2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2960640Luenenschloss, A., ter Veld, F., Albaum, S., Neddermann, T., Wendisch, V. F., and Poetsch, A. (2022). Functional genomics uncovers pleiotropic role of rhomboids in Corynebacterium glutamicum. Frontiers in Microbiology 13:771968.PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957358Lichtenstein, D., Mentz, A., Sprenger, H., Schmidt, F. F., Albaum, S., Kalinowski, J., Planatscher, H., Joos, T. O., Poetz, O., and Braeuning, A. (2021). A targeted transcriptomics approach for the determination of mixture effects of pesticides. Toxicology 460:152892.PUB | DOI | WoS | PubMed | Europe PMC
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2949076Sielemann, K., Elbeck, Z., Gärtner, A., Brodehl, A., Stanasiuk, C., Fox, H., Paluszkiewicz, L., Tiesmeier, J., Wlost, S., Gummert, J., et al. (2020). Distinct Myocardial Transcriptomic Profiles of Cardiomyopathies Stratified by the Mutant Genes. Genes 11:1430.PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950242Lichtenstein, D., Mentz, A., Schmidt, F. F., Luckert, C., Buhrke, T., Marx-Stoelting, P., Kalinowski, J., Albaum, S., Joos, T. O., Poetz, O., et al. (2020). Transcript and protein marker patterns for the identification of steatotic compounds in human HepaRG cells. Food and Chemical Toxicology 145:111690.PUB | DOI | WoS | PubMed | Europe PMC
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941248Braeuning, A., Mentz, A., Schmidt, F. F., Albaum, S., Planatscher, H., Kalinowski, J., Joos, T. O., Poetz, O., and Lichtenstein, D. (2020). RNA-PROTEIN CORRELATION OF LIVER TOXICITY MARKERS IN HEPARG CELLS. EXCLI JOURNAL 19, 135-153.PUB | DOI | WoS | PubMed | Europe PMC
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936490Seeger, B., Mentz, A., Knebel, C., Schmidt, F., Bednarz, H., Niehaus, K., Albaum, S., Kalinowski, J., Noll, T., Steinberg, P., et al. (2019). Assessment of mixture toxicity of (tri)azoles and their hepatotoxic effects in vitro by means of omics technologies. Archives of toxicology 93, 2321-2333.PUB | DOI | WoS | PubMed | Europe PMC
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933518Bischof, L. F., Haurat, M. F., Hoffmann, L., Albersmeier, A., Wolf, J., Neu, A., Pham, T. K., Albaum, S., Jakobi, T., Schouten, S., et al. (2019). Early Response of Sulfolobus acidocaldarius to Nutrient Limitation. FRONTIERS IN MICROBIOLOGY 9:3201.PUB | DOI | WoS | PubMed | Europe PMC
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2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2937250Schelletter, L., Albaum, S., Walter, S., Noll, T., and Hoffrogge, R. (2019). Clonal variations in CHO IGF signaling investigated by SILAC-based phosphoproteomics and LFQ-MS. Applied microbiology and biotechnology 103, 8127-8143.PUB | DOI | WoS | PubMed | Europe PMC
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920330Robledo, M., Schlueter, J. - P., Loehr, L. O., Linne, U., Albaum, S., Jimenez-Zurdo, J. I., and Becker, A. (2018). An sRNA and Cold Shock Protein Homolog-Based Feedforward Loop Post-transcriptionally Controls Cell Cycle Master Regulator CtrA. FRONTIERS IN MICROBIOLOGY 9:14.PUB | DOI | WoS | PubMed | Europe PMC
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919012Jaenicke, S., Albaum, S., Blumenkamp, P., Linke, B., Stoye, J., and Goesmann, A. (2018). Flexible metagenome analysis using the MGX framework. Microbiome 6:76.PUB | DOI | WoS | PubMed | Europe PMC
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919065Cerletti, M., Paggi, R., Troetschel, C., Celeste Ferrari, M., Guevara, C. R., Albaum, S., Poetsch, A., and De Castro, R. (2018). LonB Protease Is a Novel Regulator of Carotenogenesis Controlling Degradation of Phytoene Synthase in Haloferax volcanii. JOURNAL OF PROTEOME RESEARCH 17, 1158-1171.PUB | DOI | WoS | PubMed | Europe PMC
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913556Jünemann, S., Kleinbölting, N., Jaenicke, S., Henke, C., Hassa, J., Nelkner, J., Stolze, Y., Albaum, S., Schlüter, A., Goesmann, A., et al. (2017). Bioinformatics for NGS-based metagenomics and the application to biogas research. Journal of Biotechnology 261, 10-23.PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911396Müller, B., Heinrich, C., Jabs, W., Kaspar-Schönefeld, S., Schmidt, A., Wehmeier, N., Albaum, S., Baessmann, C., Noll, T., and Hoffrogge, R. (2017). Label-free protein quantification of sodium butyrate treated CHO cells by ESI-UHR-TOF-MS. Journal of Biotechnology 257, 87-98.PUB | DOI | WoS | PubMed | Europe PMC
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916543Harst, A., Albaum, S., Bojarzyn, T., Trötschel, C., and Poetsch, A. (2017). Proteomics of FACS-sorted heterogeneous Corynebacterium glutamicum populations. Journal of Proteomics 160, 1-7.PUB | DOI | WoS | PubMed | Europe PMC
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907705Brink, B., Seidel, A., Kleinbölting, N., Nattkemper, T. W., and Albaum, S. (2016). Omics Fusion - A Platform for Integrative Analysis of Omics Data. Journal of Integrative Bioinformatics 13:296.PUB | DOI | WoS | PubMed | Europe PMC
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907676Jaenicke, S., Bunk, B., Wibberg, D., Spröer, C., Hersemann, L., Blom, J., Winkler, A., Schatschneider, S., Albaum, S., Kölliker, R., et al. (2016). Complete Genome Sequence of the Barley Pathogen Xanthomonas translucens pv. translucens DSM 18974 T (ATCC 19319 T). Genome Announcements 4:e01334-16.PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904234Ortseifen, V., Stolze, Y., Maus, I., Sczyrba, A., Bremges, A., Albaum, S., Jaenicke, S., Fracowiak, J., Pühler, A., and Schlüter, A. (2016). An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plant. Journal of Biotechnology 231, 268-279.PUB | DOI | WoS | PubMed | Europe PMC
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2761035Arnold, M., Wibberg, D., Blom, J., Schatschneider, S., Winkler, A., Kutter, Y., Rückert, C., Albersmeier, A., Albaum, S., Goesmann, A., et al. (2015). Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum. Genome announcements 3:e00680-15.PUB | DOI | WoS | PubMed | Europe PMC
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2722138Kessler, N., Bonte, A., Albaum, S., Mäder, P., Messmer, M., Goesmann, A., Niehaus, K., Langenkämper, G., and Nattkemper, T. W. (2015). Learning to classify organic and conventional wheat - a machine-learning driven approach using the MeltDB 2.0 metabolomics analysis platform. Frontiers in Bioinformatics and Computational Biology 3:35.PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901297Wibberg, D., Rupp, O., Blom, J., Jelonek, L., Kröber, M., Verwaaijen, B., Goesmann, A., Albaum, S., Grosch, R., Pühler, A., et al. (2015). Development of a Rhizoctonia solani AG1-IB Specific Gene Model Enables Comparative Genome Analyses between Phytopathogenic R-solani AG1-IA, AG1-IB, AG3 and AG8 Isolates. Plos One 10:e0144769.PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2718767Wingens, M., Gätgens, J., Schmidt, A., Albaum, S., Büntemeyer, H., Noll, T., and Hoffrogge, R. (2015). 2D-DIGE screening of high-productive CHO cells under glucose limitation — Basic changes in the proteome equipment and hints for epigenetic effects. Journal of Biotechnology 201, 86-97.PUB | DOI | WoS | PubMed | Europe PMC
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758122Wibberg, D., Alkhateeb, R., Winkler, A., Albersmeier, A., Schatschneider, S., Albaum, S., Niehaus, K., Hublik, G., Pühler, A., and Vorhölter, F. - J. (2015). Draft genome of the xanthan producer Xanthomonas campestris NRRL B-1459 (ATCC 13951). Journal of Biotechnology 204, 45-46.PUB | DOI | WoS | PubMed | Europe PMC
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2656819Wippermann, A., Klausing, S., Rupp, O., Albaum, S., Büntemeyer, H., Noll, T., and Hoffrogge, R. (2014). Establishment of a CpG island microarray for analyses of genome-wide DNA methylation in Chinese hamster ovary cells. Applied Microbiology and Biotechnology 98, 579-589.PUB | DOI | WoS | PubMed | Europe PMC
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689773Jünemann, S., Prior, K., Albersmeier, A., Albaum, S., Kalinowski, J., Goesmann, A., Stoye, J., and Harmsen, D. (2014). GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop Sequencers. PLOS ONE 9:e107014.PUB | DOI | WoS | PubMed | Europe PMC
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2706029Kessler, N., Walter, F., Persicke, M., Albaum, S., Kalinowski, J., Goesmann, A., Niehaus, K., and Nattkemper, T. W. (2014). ALLocator: An Interactive Web Platform for the Analysis of Metabolomic LC-ESI-MS Datasets, Enabling Semi-Automated, User-Revised Compound Annotation and Mass Isotopomer Ratio Analysis. PLoS ONE 9:e113909.PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676552Becker, J., Timmermann, C., Rupp, O., Albaum, S., Brinkrolf, K., Goesmann, A., Pühler, A., Tauch, A., and Noll, T. (2014). Transcriptome analyses of CHO cells with the next-generation microarray CHO41K: Development and validation by analysing the influence of the growth stimulating substance IGF-1 substitute LongR(3.). Journal of biotechnology 178, 23-31.PUB | DOI | WoS | PubMed | Europe PMC
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2561776Trötschel, C., Albaum, S., and Poetsch, A. (2013). Proteome turnover in bacteria: current status for Corynebacterium glutamicum and related bacteria. Microbial biotechnology 6, 708-719.PUB | DOI | WoS | PubMed | Europe PMC
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498232Trötschel, C., Albaum, S., Wolff, D., Schröder, S., Goesmann, A., Nattkemper, T. W., and Poetsch, A. (2012). Protein turnover quantification in a multi-labeling approach - from data calculation to evaluation. Molecular & Cellular Proteomics 11, 512-526.PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2300063Albaum, S., Hahne, H., Otto, A., Haußmann, U., Becher, D., Poetsch, A., Goesmann, A., and Nattkemper, T. W. (2011). A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study. Proteome Science 9:30.PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2451800Toepel, J., Albaum, S., Arvidsson, S., Goesmann, A., La Russa, M., Rogge, K., and Kruse, O. (2011). Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii. BMC Genomics 12:579.PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783813Neuweger, H., Persicke, M., Albaum, S., Bekel, T., Dondrup, M., Hüser, A. T., Winnebald, J., Schneider, J., Kalinowski, J., and Goesmann, A. (2009). Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example. BMC Systems Biology 3:82.PUB | PDF | DOI | PubMed | Europe PMC
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187Blom, J., Albaum, S., Doppmeier, D., Pühler, A., Vorhölter, F. - J., Zakrzewski, M., and Goesmann, A. (2009). EDGAR: a software framework for the comparative analysis of prokaryotic genomes. BMC Bioinformatics 10:154.PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321Dondrup, M., Albaum, S., Griebel, T., Henckel, K., Jünemann, S., Kahlke, T., Kleindt, C. K., Kuester, H., Linke, B., Mertens, D., et al. (2009). EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data. BMC Bioinformatics 10:50.PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531Albaum, S., Neuweger, H., Fraenzel, B., Lange, S., Mertens, D., Troetschel, C., Wolters, D., Kalinowski, J., Nattkemper, T. W., and Goesmann, A. (2009). Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments. Bioinformatics 25, 3128-3134.PUB | DOI | WoS | PubMed | Europe PMC
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636699Neuweger, H., Albaum, S., Dondrup, M., Persicke, M., Watt, T., Niehaus, K., Stoye, J., and Goesmann, A. (2008). MeltDB: a software platform for the analysis and integration of metabolomics experiment data. Bioinformatics 24, 2726-2732.PUB | DOI | WoS | PubMed | Europe PMC
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381Albaum, S., Neuweger, H., Lange, S., Mertens, D., Runte, K., Kalinowski, J., Nattkemper, T. W., and Goesmann, A. (2008). “ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract)” in HUPO 7th Annual World Congress.PUB
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754Neuweger, H., Baumbach, J., Albaum, S., Bekel, T., Dondrup, M., Hüser, A. T., Kalinowski, J., Oehm, S., Pühler, A., Rahmann, S., et al. (2007). CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data. BMC Systems Biology 1:55.PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773302Bartels, D., Kespohl, S., Albaum, S., Drüke, T., Goesmann, A., Herold, J., Kaiser, O., Pühler, A., Pfeiffer, F., Raddatz, G., et al. (2005). BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison. Bioinformatics 21, 853-859.PUB | PDF | DOI | WoS | PubMed | Europe PMC