36 Publikationen
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2024 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2988228Agrofoglio, Yamila Carla, Iglesias, Maria Jose, Perez-Santangelo, Soledad, de Leone, Maria Jose, Köster, Tino, Catala, Rafael, Salinas, Julio, Yanovsky, Marcelo, Staiger, Dorothee, and Mateos, Julieta. “Arginine methylation of SM-LIKE PROTEIN 4 antagonistically affects alternative splicing during Arabidopsis stress responses”. Plant Cell (2024): koae051.PUB | DOI | WoS | PubMed | Europe PMC
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2024 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2986985Lewinski, Martin, Brüggemann, Mirko, Köster, Tino, Reichel, Marlene, Bergelt, Thorsten, Meyer, Katja, König, Julian, Zarnack, Kathi, and Staiger, Dorothee. “Mapping protein-RNA binding in plants with individual-nucleotide-resolution UV cross-linking and immunoprecipitation (plant iCLIP2)”. Nature Protocols (2024).PUB | DOI | WoS | PubMed | Europe PMC
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2023 | Preprint | Veröffentlicht | PUB-ID: 2987856Agrofoglio, Yamila Carla, Iglesias, María José, Perez-Santángelo, Soledad, José de Leone, María, Köster, Tino, Catalá, Rafael, Salinas, Julio, Yanovsky, Marcelo J., Staiger, Dorothee, and Mateos, Julieta L. “Antagonistic effects of arginine methylation of LSM4 on alternative splicing during plant stress responses”. bioRxiv (2023).PUB | DOI | Preprint
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2023 | Preprint | Veröffentlicht | PUB-ID: 2987855Laloum, Tom, Martín, Guiomar, Lewinski, Martin, Yanez, Romana J. R., Köster, Tino, Staiger, Dorothee, and Duque, Paula. “An Arabidopsis SR protein relieving ABA inhibition of seedling establishment represses ABA-responsive alternative splicing”. bioRxiv (2023).PUB | DOI | Preprint
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2023 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2985598Lewinski, Martin, Steffen, Alexander, Kachariya, Nitin, Elgner, Mareike, Schmal, Christoph, Messini, Niki, Köster, Tino, Reichel, Marlene, Sattler, Michael, Zarnack, Kathi, and Staiger, Dorothee. “Arabidopsis thaliana GLYCINE RICH RNA-BINDING PROTEIN 7 interaction with its iCLIP target LHCB1.1 correlates with changes in RNA stability and circadian oscillation”. Plant Journal (2023).PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965202Lüders, Janina, Winkel, Andreas, Reichel, Marlene, Bitterer, Valentin, Scheibe, Marion, Widmann, Christiane, Butter, Falk, and Köster, Tino. “Identification of Pri-miRNA Stem-Loop Interacting Proteins in Plants Using a Modified Version of the Csy4 CRISPR Endonuclease”. International Journal of Molecular Sciences 23.16 (2022): 8961.PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2964517Zhang, Runxuan, Kuo, Richard, Coulter, Max, Calixto, Cristiane P G, Entizne, Juan Carlos, Guo, Wenbin, Marquez, Yamile, Milne, Linda, Riegler, Stefan, Matsui, Akihiro, Tanaka, Maho, Harvey, Sarah, Gao, Yubang, WieSSner-Kroh, Theresa, Paniagua, Alejandro, Crespi, Martin, Denby, Katherine, Hur, Asa Ben, Huq, Enamul, Jantsch, Michael, Jarmolowski, Artur, Köster, Tino, Laubinger, Sascha, Li, Qingshun Quinn, Gu, Lianfeng, Seki, Motoaki, Staiger, Dorothee, Sunkar, Ramanjulu, Szweykowska-Kulinska, Zofia, Tu, Shih-Long, Wachter, Andreas, Waugh, Robbie, Xiong, Liming, Zhang, Xiao-Ning, Conesa, Ana, Reddy, Anireddy S N, Barta, Andrea, Kalyna, Maria, and Brown, John W S. “A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis”. Genome biology 23.1 (2022): 149.PUB | DOI | WoS | PubMed | Europe PMC
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2021 | Preprint | Veröffentlicht | PUB-ID: 2954082Arribas-Hernandez, Laura, Rennie, Sarah, Köster, Tino, Schon, Michael, Porcelli, Carlotta, Lewinski, Martin, Enugutti, Balaji, Nodine, Michael D, Staiger, Dorothee, Andersson, Robin, and Brodersen, Peter. “Principles of mRNA targeting and regulation via the Arabidopsis m6A-binding proteins ECT2 and ECT3”. bioRxiv (2021).PUB | DOI | Preprint
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2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2959415Arribas-Hernández, Laura, Rennie, Sarah, Köster, Tino, Porcelli, Carlotta, Lewinski, Martin, Staiger, Dorothee, Andersson, Robin, and Brodersen, Peter. “Principles of mRNA targeting via the Arabidopsis m6A-binding protein ECT2”. eLife 10 (2021): e72375.PUB | DOI | WoS | PubMed | Europe PMC
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2021 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2948744Köster, Tino, and Staiger, Dorothee. “RNA-Binding Protein Immunoprecipitation and High-Throughput Sequencing”. Arabidopsis Protocols . Ed. José J. Sanchez-Serrano and Julio Salinas. New York: Humana, 2021.Vol. 2200. Methods in molecular biology . 453-461.PUB | DOI | PubMed | Europe PMC
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942001Lewinski, Martin, Bramkamp, Yannik, Köster, Tino, and Staiger, Dorothee. “SEQing: web-based visualization of iCLIP and RNA-seq data in an interactive python framework.”. BMC bioinformatics 21.1 (2020): 113.PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2945219Köster, Tino, and Staiger, Dorothee. “Plant Individual Nucleotide Resolution Cross-Linking and Immunoprecipitation to Characterize RNA-Protein Complexes.”. Methods in molecular biology (Clifton, N.J.) 2166 (2020): 255-267.PUB | DOI | PubMed | Europe PMC
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2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2937585Köster, Tino, Reichel, Marlene, and Staiger, Dorothee. “CLIP and RNA interactome studies to unravel genome-wide RNA-protein interactions in vivo in Arabidopsis thaliana.”. Methods (San Diego, Calif.) (2019).PUB | DOI | WoS | PubMed | Europe PMC
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2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2936720Reichel, Marlene, Köster, Tino, and Staiger, Dorothee. “Marking RNA: m6A writers, readers and functions in Arabidopsis”. Journal of molecular cell biology 11.10 (2019): 899-910.PUB | DOI | WoS | PubMed | Europe PMC
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2018 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2934855Lewinski, Martin, and Köster, Tino. “Systems Approaches to Map In Vivo RNA–Protein Interactions in Arabidopsis thaliana”. Systems Biology. Ed. Nikolaus Rajewsky, Stefan Jurga, and Jan Barciszewski. Cham: Springer International Publishing, 2018. RNA Technologies. 77-95.PUB | DOI
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919118Johansson, Mikael, and Köster, Tino. “On the move through time - a historical review of plant clock research”. Plant Biology 21.S1 (2018): 13-20.PUB | DOI | WoS | PubMed | Europe PMC
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918314Köster, Tino, and Meyer, Katja. “Plant Ribonomics: Proteins in Search of RNA Partners”. Trends in Plant Science 23.4 (2018): 352-365.PUB | DOI | WoS | PubMed | Europe PMC
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914954Meyer, Katja, Köster, Tino, Nolte, Christine, Weinholdt, Claus, Lewinski, Martin, Grosse, Ivo, and Staiger, Dorothee. “Adaptation of iCLIP to plants determines the binding landscape of the clock-regulated RNA-binding protein AtGRP7”. Genome Biology 18.1 (2017): 204.PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911065Köster, Tino, Marondedze, Claudius, Meyer, Katja, and Staiger, Dorothee. “RNA-Binding Proteins Revisited – The Emerging Arabidopsis mRNA Interactome”. Trends in Plant Science 22.6 (2017): 512-526.PUB | DOI | WoS | PubMed | Europe PMC
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911046Foley, Shawn W., Gosai, Sager J., Wang, Dongxue, Selamoglu, Nur, Sollitti, Amelia C., Köster, Tino, Steffen, Alexander, Lyons, Eric, Daldal, Fevzi, Garcia, Benjamin A., Staiger, Dorothee, Deal, Roger B., and Gregory, Brian D. “A Global View of RNA-Protein Interactions Identifies Post-transcriptional Regulators of Root Hair Cell Fate”. Developmental Cell 41.2 (2017): 204-220.e5.PUB | DOI | WoS | PubMed | Europe PMC
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764695Meyer, Katja, Köster, Tino, and Staiger, Dorothee. “Pre-mRNA Splicing in Plants: In Vivo Functions of RNA-Binding Proteins Implicated in the Splicing Process”. Biomolecules 5.3 (2015): 1717-1740.PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2629103Köster, Tino, and Staiger, Dorothee. “RNA-Binding Protein Immunoprecipitation from Whole-Cell Extracts”. Methods in molecular biology (Clifton, N.J.) 1062 (2014): 679-695.PUB | DOI | PubMed | Europe PMC
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631517Hackmann, Christian, Korneli, Christin, Kutyniok, Magdalene, Köster, Tino, Wiedenlübbert, Matthias, Müller, Caroline, and Staiger, Dorothee. “Salicylic acid-dependent and -independent impact of an RNA-binding protein on plant immunity”. Plant, Cell & Environment 37.3 (2014): 696-706.PUB | DOI | WoS | PubMed | Europe PMC
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2709993Meyer, Katja, Köster, Tino, and Staiger, Dorothee. “Unraveling post-transcriptional networks: Analysis of RNA-protein interactions with RNA immunoprecipitation”. Biotechnologia. Journal of Biotechnology, Computational Biology and Bionanotechnology 95.1 (2014): 43.PUB | DOI
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2694724Köster, Tino, Meyer, Katja, Weinholdt, Claus, Smith, Lisa M., Lummer, Martina, Speth, Corinna, Grosse, Ivo, Weigel, Detlef, and Staiger, Dorothee. “Regulation of pri-miRNA processing by the hnRNP-like protein AtGRP7 in Arabidopsis”. Nucleic acids research 42.15 (2014): 9925-9936.PUB | DOI | WoS | PubMed | Europe PMC
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2676604Köster, Tino, Haas, Meike, and Staiger, Dorothee. “The RIPper Case: Identification of RNA-Binding Protein Targets by RNA Immunoprecipitation”. Methods in molecular biology (Clifton, N.J.) 1158 (2014): 107-121.PUB | DOI | PubMed | Europe PMC
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2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2709933Meyer, Katja, Köster, Tino, and Staiger, Dorothee. “Unraveling post-tramscriptional networks: Analysis of RNA-protein interactions with RNA immunoprecipitation”. BioTechnologia 95.1 (2014): 43-43.PUB
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2014 | Dissertation | PUB-ID: 2717324Köster, Tino. Funktion von Ribonukleoproteinkomplexen in der posttranskriptionellen Regulation und microRNA-Biogenese. Bielefeld, 2014.PUB
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2709991Köster, Tino, Brown, John WS, and Staiger, Dorothee. “Jenseits des Genoms – Alternatives Spleißen erhöht die Vielfalt des Transkriptoms”. Naturwissenschaftliche Rundschau 67.11 (2014): 566-571.PUB
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548847Streitner, Corinna, Köster, Tino, Simpson, Craig G., Shaw, Paul, Danisman, Selahattin, Brown, John W. S., and Staiger, Dorothee. “An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thaliana”. Nucleic acids research 40.22 (2012): 11240-11255.PUB | DOI | WoS | PubMed | Europe PMC
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003474Staiger, Dorothee, and Köster, Tino. “Spotlight on post-transcriptional control in the circadian system”. Cellular and Molecular Life Sciences 68.1 (2011): 71-83.PUB | DOI | WoS | PubMed | Europe PMC
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2438856Staiger, Dorothee, and Köster, Tino. “Timing is everything - Die Innere Uhr der Pflanzen”. Labor & More 5 (2009): 40-41.PUB | PDF | Download (ext.)