26 Publikationen
-
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934274Assessing taxonomic metagenome profilers with OPALPUB | DOI | WoS | PubMed | Europe PMC | Preprint
Meyer F, Bremges A, Belmann P, Janssen S, McHardy AC, Koslicki D (2019)
Genome biology 20(1): 51. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941280Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and ArchaeaPUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Zhu Q, Mai U, Pfeiffer W, Janssen S, Asnicar F, Sanders JG, Belda-Ferre P, Al-Ghalith GA, Kopylova E, McDonald D, Kosciolek T, et al. (2019)
Nature Communications 10(1): 5477. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941281The impact of skin care products on skin chemistry and microbiome dynamicsPUB | DOI | WoS | PubMed | Europe PMC
Bouslimani A, da Silva R, Kosciolek T, Janssen S, Callewaert C, Amir A, Dorrestein K, Melnik AV, Zaramela LS, Kim J-N, Humphrey G, et al. (2019)
BMC Biology 17(1): 47. -
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934328Environmental toxicants in breast milk of Norwegian mothers and gut bacteria composition and metabolites in their infants at 1 monthPUB | DOI | WoS | PubMed | Europe PMC
Iszatt N, Janssen S, Lenters V, Dahl C, Stigum H, Knight R, Mandal S, Peddada S, González A, Midtvedt T, Eggesbø M (2019)
Microbiome 7(1): 34. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921267American Gut: an Open Platform for Citizen Science Microbiome ResearchPUB | DOI | WoS | PubMed | Europe PMC
McDonald D, Hyde E, Debelius JW, Morton JT, Gonzalez A, Ackermann G, Aksenov AA, Behsaz B, Brennan C, Chen Y, DeRight Goldasich L, et al. (2018)
mSystems 3(3): e00031-18. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921270KatharoSeq Enables High-Throughput Microbiome Analysis from Low-Biomass SamplesPUB | DOI | WoS | PubMed | Europe PMC
Minich JJ, Zhu Q, Janssen S, Hendrickson R, Amir A, Vetter R, Hyde J, Doty MM, Stillwell K, Benardini J, Kim JH, et al. (2018)
mSystems 3(3): e00218-17. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921268Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical InformationPUB | DOI | WoS | PubMed | Europe PMC
Janssen S, McDonald D, Gonzalez A, Navas-Molina JA, Jiang L, Xu ZZ, Winker K, Kado DM, Orwoll E, Manary M, Mirarab S, et al. (2018)
mSystems 3(3): e00021-18. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921273Creating a 3D microbial and chemical snapshot of a human habitatPUB | DOI | WoS | PubMed | Europe PMC
Kapono CA, Morton JT, Bouslimani A, Melnik AV, Orlinsky K, Knaan TL, Garg N, Vázquez-Baeza Y, Protsyuk I, Janssen S, Zhu Q, et al. (2018)
Scientific Reports 8(1): 3669. -
2018 | Preprint | Veröffentlicht | PUB-ID: 2931839QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data sciencePUB | DOI
Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet C, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, et al. (2018)
PeerJ. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931438Qiita: rapid, web-enabled microbiome meta-analysisPUB | DOI | WoS | PubMed | Europe PMC
Gonzalez A, Navas-Molina JA, Kosciolek T, McDonald D, Vázquez-Baeza Y, Ackermann G, DeReus J, Janssen S, Swafford AD, Orchanian SB, Sanders JG, et al. (2018)
Nature Methods 15(10): 796-798. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914868A communal catalogue reveals Earth’s multiscale microbial diversityPUB | DOI | WoS | PubMed | Europe PMC
Thompson LR, Sanders JG, McDonald D, Amir A, Ladau J, Locey KJ, Prill RJ, Tripathi A, Gibbons SM, Ackermann G, Navas-Molina JA, et al. (2017)
Nature 551(7681): 457-463. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914367Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics softwarePUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Sczyrba A, Hofmann P, Belmann P, Koslicki D, Janssen S, Dröge J, Gregor I, Majda S, Fiedler J, Dahms E, Bremges A, et al. (2017)
Nature Methods 14(11): 1063-1071. -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907305Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson's DiseasePUB | DOI | WoS | PubMed | Europe PMC
Sampson TR, Debelius JW, Thron T, Janssen S, Shastri GG, Ilhan ZE, Challis C, Schretter CE, Rocha S, Gradinaru V, Chesselet M-F, et al. (2016)
Cell 167(6): 1469-1480.e12. -
-
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2700599 PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
-
2014 | Bielefelder E-Dissertation | PUB-ID: 2682131
Kisses, ambivalent models and more: Contributions to the analysis of RNA secondary structure.PUB | PDF
Janssen S (2014)
Bielefeld: Universitätsbibliothek. -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2551798Bellman's GAP -- a Language and Compiler for Dynamic Programming in Sequence AnalysisPUB | DOI | WoS | PubMed | Europe PMC
Sauthoff G, Mohl M, Janssen S, Giegerich R (2013)
Bioinformatics 29(5): 551-560. -
2012 | Sammelwerksbeitrag | PUB-ID: 2439665Abstract Shape Analysis of RNAPUB
Janssen S, Giegerich R (2012)
In: RNA Bioinformatics t.b.a. Gorodkin J, Weinberg Z (Eds); 1-35. -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2410526
Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure predictionPUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Janssen S, Schudoma C, Steger G, Giegerich R (2011)
BMC Bioinformatics 12(1): 429. -
2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2310489Bellman's GAP: a declarative language for dynamic programmingPUB | DOI | Download (ext.)
Sauthoff G, Janssen S, Giegerich R (2011)
In: Proceedings of the 13th international ACM SIGPLAN symposium on Principles and practices of declarative programming. New York, NY, USA: ACM: 29-40. -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785497
A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium melilotiPUB | PDF | DOI | WoS | PubMed | Europe PMC
Schlüter J-P, Reinkensmeier J, Daschkey S, Evguenieva-Hackenberg E, Janssen S, Jaenicke S, Becker JD, Giegerich R, Becker A (2010)
BMC Genomics 11(1): 245. -
2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1893988
Browsing RNA Structures by Interactive SonificationPUB | Datei | Download (ext.)
Grond F, Janssen S, Schirmer S, Hermann T (2010)
In: Proceedings of the 3rd Interactive Sonification Workshop. Bresin R, Hermann T, Hunt A (Eds); (Human Interaction with Auditory Displays). KTH, Stockholm, Sweden: KTH School of Computer Science and Communication (CSC): 11-16. -
2010 | Datenpublikation | PUB-ID: 2698354
Supplementary Material for "Browsing RNA Structures by Interactive Sonification"PUB | Dateien verfügbar | DOI
Grond F, Janssen S, Schirmer S, Hermann T (2010)
Bielefeld University. -
2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1894008
Prediction of RNA Secondary Structure Including Kissing Hairpin MotifsPUB | Datei | DOI
Theis C, Janssen S, Giegerich R (2010)
In: Algorithms in Bioinformatics. 10th international workshop (WABI 2010), proceedings. Moulton V, Singh M (Eds); Lecture Notes in Bioinformatics, 6293. Berlin: Springer: 52-64. -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1893946
Faster computation of exact RNA shape probabilitiesPUB | Datei | DOI | WoS | PubMed | Europe PMC
Janssen S, Giegerich R (2010)
Bioinformatics 26(5): 632-639. -
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1893917
Shape based indexing for faster search of RNA family databasesPUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
Janssen S, Reeder J, Giegerich R (2008)
BMC Bioinformatics 9(1): 131.