A communal catalogue reveals Earth’s multiscale microbial diversity

Thompson LR, Sanders JG, McDonald D, Amir A, Ladau J, Locey KJ, Prill RJ, Tripathi A, Gibbons SM, Ackermann G, Navas-Molina JA, et al. (2017)
Nature 551(7681): 457-463.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
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Autor*in
Thompson, Luke R.; Sanders, Jon G.; McDonald, Daniel; Amir, Amnon; Ladau, Joshua; Locey, Kenneth J.; Prill, Robert J.; Tripathi, Anupriya; Gibbons, Sean M.; Ackermann, Gail; Navas-Molina, Jose A.; Janssen, StefanUniBi
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Einrichtung
Erscheinungsjahr
2017
Zeitschriftentitel
Nature
Band
551
Ausgabe
7681
Seite(n)
457-463
ISSN
0028-0836, 1476-4687
Page URI
https://pub.uni-bielefeld.de/record/2914868

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Thompson LR, Sanders JG, McDonald D, et al. A communal catalogue reveals Earth’s multiscale microbial diversity. Nature. 2017;551(7681):457-463.
Thompson, L. R., Sanders, J. G., McDonald, D., Amir, A., Ladau, J., Locey, K. J., Prill, R. J., et al. (2017). A communal catalogue reveals Earth’s multiscale microbial diversity. Nature, 551(7681), 457-463. https://doi.org/10.1038/nature24621
Thompson, Luke R., Sanders, Jon G., McDonald, Daniel, Amir, Amnon, Ladau, Joshua, Locey, Kenneth J., Prill, Robert J., et al. 2017. “A communal catalogue reveals Earth’s multiscale microbial diversity”. Nature 551 (7681): 457-463.
Thompson, L. R., Sanders, J. G., McDonald, D., Amir, A., Ladau, J., Locey, K. J., Prill, R. J., Tripathi, A., Gibbons, S. M., Ackermann, G., et al. (2017). A communal catalogue reveals Earth’s multiscale microbial diversity. Nature 551, 457-463.
Thompson, L.R., et al., 2017. A communal catalogue reveals Earth’s multiscale microbial diversity. Nature, 551(7681), p 457-463.
L.R. Thompson, et al., “A communal catalogue reveals Earth’s multiscale microbial diversity”, Nature, vol. 551, 2017, pp. 457-463.
Thompson, L.R., Sanders, J.G., McDonald, D., Amir, A., Ladau, J., Locey, K.J., Prill, R.J., Tripathi, A., Gibbons, S.M., Ackermann, G., Navas-Molina, J.A., Janssen, S., Kopylova, E., Vázquez-Baeza, Y., González, A., Morton, J.T., Mirarab, S., Zech Xu, Z., Jiang, L., Haroon, M.F., Kanbar, J., Zhu, Q., Jin Song, S., Kosciolek, T., Bokulich, N.A., Lefler, J., Brislawn, C.J., Humphrey, G., Owens, S.M., Hampton-Marcell, J., Berg-Lyons, D., McKenzie, V., Fierer, N., Fuhrman, J.A., Clauset, A., Stevens, R.L., Shade, A., Pollard, K.S., Goodwin, K.D., Jansson, J.K., Gilbert, J.A., Knight, R., Rivera, J.L.A., Al-Moosawi, L., Alverdy, J., Amato, K.R., Andras, J., Angenent, L.T., Antonopoulos, D.A., Apprill, A., Armitage, D., Ballantine, K., Bárta, J.ˇí, Baum, J.K., Berry, A., Bhatnagar, A., Bhatnagar, M., Biddle, J.F., Bittner, L., Boldgiv, B., Bottos, E., Boyer, D.M., Braun, J., Brazelton, W., Brearley, F.Q., Campbell, A.H., Caporaso, J.G., Cardona, C., Carroll, J.L., Cary, S.C., Casper, B.B., Charles, T.C., Chu, H., Claar, D.C., Clark, R.G., Clayton, J.B., Clemente, J.C., Cochran, A., Coleman, M.L., Collins, G., Colwell, R.R., Contreras, M., Crary, B.B., Creer, S., Cristol, D.A., Crump, B.C., Cui, D., Daly, S.E., Davalos, L., Dawson, R.D., Defazio, J., Delsuc, F., Dionisi, H.M., Dominguez-Bello, M.G., Dowell, R., Dubinsky, E.A., Dunn, P.O., Ercolini, D., Espinoza, R.E., Ezenwa, V., Fenner, N., Findlay, H.S., Fleming, I.D., Fogliano, V., Forsman, A., Freeman, C., Friedman, E.S., Galindo, G., Garcia, L., Garcia-Amado, M.A., Garshelis, D., Gasser, R.B., Gerdts, G., Gibson, M.K., Gifford, I., Gill, R.T., Giray, T., Gittel, A., Golyshin, P., Gong, D., Grossart, H.-P., Guyton, K., Haig, S.-J., Hale, V., Hall, R.S., Hallam, S.J., Handley, K.M., Hasan, N.A., Haydon, S.R., Hickman, J.E., Hidalgo, G., Hofmockel, K.S., Hooker, J., Hulth, S., Hultman, J., Hyde, E., Ibáñez-Álamo, J.D., Jastrow, J.D., Jex, A.R., Johnson, L.S., Johnston, E.R., Joseph, S., Jurburg, S.D., Jurelevicius, D., Karlsson, A., Karlsson, R., Kauppinen, S., Kellogg, C.T.E., Kennedy, S.J., Kerkhof, L.J., King, G.M., Kling, G.W., Koehler, A.V., Krezalek, M., Kueneman, J., Lamendella, R., Landon, E.M., Lane-deGraaf, K., LaRoche, J., Larsen, P., Laverock, B., Lax, S., Lentino, M., Levin, I.I., Liancourt, P., Liang, W., Linz, A.M., Lipson, D.A., Liu, Y., Lladser, M.E., Lozada, M., Spirito, C.M., MacCormack, W.P., MacRae-Crerar, A., Magris, M., Martín-Platero, A.M., Martín-Vivaldi, M., Martínez, L.M., Martínez-Bueno, M., Marzinelli, E.M., Mason, O.U., Mayer, G.D., McDevitt-Irwin, J.M., McDonald, J.E., McGuire, K.L., McMahon, K.D., McMinds, R., Medina, M., Mendelson, J.R., Metcalf, J.L., Meyer, F., Michelangeli, F., Miller, K., Mills, D.A., Minich, J., Mocali, S., Moitinho-Silva, L., Moore, A., Morgan-Kiss, R.M., Munroe, P., Myrold, D., Neufeld, J.D., Ni, Y., Nicol, G.W., Nielsen, S., Nissimov, J.I., Niu, K., Nolan, M.J., Noyce, K., O'Brien, S.L., Okamoto, N., Orlando, L., Castellano, Y.O., Osuolale, O., Oswald, W., Parnell, J., Peralta-Sánchez, J.M., Petraitis, P., Pfister, C., Pilon-Smits, E., Piombino, P., Pointing, S.B., Pollock, F.J., Potter, C., Prithiviraj, B., Quince, C., Rani, A., Ranjan, R., Rao, S., Rees, A.P., Richardson, M., Riebesell, U., Robinson, C., Rockne, K.J., Rodriguezl, S.M., Rohwer, F., Roundstone, W., Safran, R.J., Sangwan, N., Sanz, V., Schrenk, M., Schrenzel, M.D., Scott, N.M., Seger, R.L., Seguin-Orlando, A., Seldin, L., Seyler, L.M., Shakhsheer, B., Sheets, G.M., Shen, C., Shi, Y., Shin, H., Shogan, B.D., Shutler, D., Siegel, J., Simmons, S., Sjöling, S., Smith, D.P., Soler, J.J., Sperling, M., Steinberg, P.D., Stephens, B., Stevens, M.A., Taghavi, S., Tai, V., Tait, K., Tan, C.L., Tas, N., Taylor, D.L., Thomas, T., Timling, I., Turner, B.L., Urich, T., Ursell, L.K., van der Lelie, D., Van Treuren, W., van Zwieten, L., Vargas-Robles, D., Thurber, R.V., Vitaglione, P., Walker, D.A., Walters, W.A., Wang, S., Wang, T., Weaver, T., Webster, N.S., Wehrle, B., Weisenhorn, P., Weiss, S., Werner, J.J., West, K., Whitehead, A., Whitehead, S.R., Whittingham, L.A., Willerslev, E., Williams, A.E., Wood, S.A., Woodhams, D.C., Yang, Y., Zaneveld, J., Zarraonaindia, I., Zhang, Q., Zhao, H.: A communal catalogue reveals Earth’s multiscale microbial diversity. Nature. 551, 457-463 (2017).
Thompson, Luke R., Sanders, Jon G., McDonald, Daniel, Amir, Amnon, Ladau, Joshua, Locey, Kenneth J., Prill, Robert J., Tripathi, Anupriya, Gibbons, Sean M., Ackermann, Gail, Navas-Molina, Jose A., Janssen, Stefan, Kopylova, Evguenia, Vázquez-Baeza, Yoshiki, González, Antonio, Morton, James T., Mirarab, Siavash, Zech Xu, Zhenjiang, Jiang, Lingjing, Haroon, Mohamed F., Kanbar, Jad, Zhu, Qiyun, Jin Song, Se, Kosciolek, Tomasz, Bokulich, Nicholas A., Lefler, Joshua, Brislawn, Colin J., Humphrey, Gregory, Owens, Sarah M., Hampton-Marcell, Jarrad, Berg-Lyons, Donna, McKenzie, Valerie, Fierer, Noah, Fuhrman, Jed A., Clauset, Aaron, Stevens, Rick L., Shade, Ashley, Pollard, Katherine S., Goodwin, Kelly D., Jansson, Janet K., Gilbert, Jack A., Knight, Rob, Rivera, Jose L. Agosto, Al-Moosawi, Lisa, Alverdy, John, Amato, Katherine R., Andras, Jason, Angenent, Largus T., Antonopoulos, Dionysios A., Apprill, Amy, Armitage, David, Ballantine, Kate, Bárta, Jirˇí, Baum, Julia K., Berry, Allison, Bhatnagar, Ashish, Bhatnagar, Monica, Biddle, Jennifer F., Bittner, Lucie, Boldgiv, Bazartseren, Bottos, Eric, Boyer, Donal M., Braun, Josephine, Brazelton, William, Brearley, Francis Q., Campbell, Alexandra H., Caporaso, J. Gregory, Cardona, Cesar, Carroll, JoLynn, Cary, S. Craig, Casper, Brenda B., Charles, Trevor C., Chu, Haiyan, Claar, Danielle C., Clark, Robert G., Clayton, Jonathan B., Clemente, Jose C., Cochran, Alyssa, Coleman, Maureen L., Collins, Gavin, Colwell, Rita R., Contreras, Mónica, Crary, Benjamin B., Creer, Simon, Cristol, Daniel A., Crump, Byron C., Cui, Duoying, Daly, Sarah E., Davalos, Liliana, Dawson, Russell D., Defazio, Jennifer, Delsuc, Frédéric, Dionisi, Hebe M., Dominguez-Bello, Maria Gloria, Dowell, Robin, Dubinsky, Eric A., Dunn, Peter O., Ercolini, Danilo, Espinoza, Robert E., Ezenwa, Vanessa, Fenner, Nathalie, Findlay, Helen S., Fleming, Irma D., Fogliano, Vincenzo, Forsman, Anna, Freeman, Chris, Friedman, Elliot S., Galindo, Giancarlo, Garcia, Liza, Garcia-Amado, Maria Alexandra, Garshelis, David, Gasser, Robin B., Gerdts, Gunnar, Gibson, Molly K., Gifford, Isaac, Gill, Ryan T., Giray, Tugrul, Gittel, Antje, Golyshin, Peter, Gong, Donglai, Grossart, Hans-Peter, Guyton, Kristina, Haig, Sarah-Jane, Hale, Vanessa, Hall, Ross Stephen, Hallam, Steven J., Handley, Kim M., Hasan, Nur A., Haydon, Shane R., Hickman, Jonathan E., Hidalgo, Glida, Hofmockel, Kirsten S., Hooker, Jeff, Hulth, Stefan, Hultman, Jenni, Hyde, Embriette, Ibáñez-Álamo, Juan Diego, Jastrow, Julie D., Jex, Aaron R., Johnson, L. Scott, Johnston, Eric R., Joseph, Stephen, Jurburg, Stephanie D., Jurelevicius, Diogo, Karlsson, Anders, Karlsson, Roger, Kauppinen, Seth, Kellogg, Colleen T. E., Kennedy, Suzanne J., Kerkhof, Lee J., King, Gary M., Kling, George W., Koehler, Anson V., Krezalek, Monika, Kueneman, Jordan, Lamendella, Regina, Landon, Emily M., Lane-deGraaf, Kelly, LaRoche, Julie, Larsen, Peter, Laverock, Bonnie, Lax, Simon, Lentino, Miguel, Levin, Iris I., Liancourt, Pierre, Liang, Wenju, Linz, Alexandra M., Lipson, David A., Liu, Yongqin, Lladser, Manuel E., Lozada, Mariana, Spirito, Catherine M., MacCormack, Walter P., MacRae-Crerar, Aurora, Magris, Magda, Martín-Platero, Antonio M., Martín-Vivaldi, Manuel, Martínez, L. Margarita, Martínez-Bueno, Manuel, Marzinelli, Ezequiel M., Mason, Olivia U., Mayer, Gregory D., McDevitt-Irwin, Jamie M., McDonald, James E., McGuire, Krista L., McMahon, Katherine D., McMinds, Ryan, Medina, Mónica, Mendelson, Joseph R., Metcalf, Jessica L., Meyer, Folker, Michelangeli, Fabian, Miller, Kim, Mills, David A., Minich, Jeremiah, Mocali, Stefano, Moitinho-Silva, Lucas, Moore, Anni, Morgan-Kiss, Rachael M., Munroe, Paul, Myrold, David, Neufeld, Josh D., Ni, Yingying, Nicol, Graeme W., Nielsen, Shaun, Nissimov, Jozef I., Niu, Kefeng, Nolan, Matthew J., Noyce, Karen, O'Brien, Sarah L., Okamoto, Noriko, Orlando, Ludovic, Castellano, Yadira Ortiz, Osuolale, Olayinka, Oswald, Wyatt, Parnell, Jacob, Peralta-Sánchez, Juan M., Petraitis, Peter, Pfister, Catherine, Pilon-Smits, Elizabeth, Piombino, Paola, Pointing, Stephen B., Pollock, F. Joseph, Potter, Caitlin, Prithiviraj, Bharath, Quince, Christopher, Rani, Asha, Ranjan, Ravi, Rao, Subramanya, Rees, Andrew P., Richardson, Miles, Riebesell, Ulf, Robinson, Carol, Rockne, Karl J., Rodriguezl, Selena Marie, Rohwer, Forest, Roundstone, Wayne, Safran, Rebecca J., Sangwan, Naseer, Sanz, Virginia, Schrenk, Matthew, Schrenzel, Mark D., Scott, Nicole M., Seger, Rita L., Seguin-Orlando, Andaine, Seldin, Lucy, Seyler, Lauren M., Shakhsheer, Baddr, Sheets, Gabriela M., Shen, Congcong, Shi, Yu, Shin, Hakdong, Shogan, Benjamin D., Shutler, Dave, Siegel, Jeffrey, Simmons, Steve, Sjöling, Sara, Smith, Daniel P., Soler, Juan J., Sperling, Martin, Steinberg, Peter D., Stephens, Brent, Stevens, Melita A., Taghavi, Safiyh, Tai, Vera, Tait, Karen, Tan, Chia L., Tas, Neslihan, Taylor, D. Lee, Thomas, Torsten, Timling, Ina, Turner, Benjamin L., Urich, Tim, Ursell, Luke K., van der Lelie, Daniel, Van Treuren, William, van Zwieten, Lukas, Vargas-Robles, Daniela, Thurber, Rebecca Vega, Vitaglione, Paola, Walker, Donald A., Walters, William A., Wang, Shi, Wang, Tao, Weaver, Tom, Webster, Nicole S., Wehrle, Beck, Weisenhorn, Pamela, Weiss, Sophie, Werner, Jeffrey J., West, Kristin, Whitehead, Andrew, Whitehead, Susan R., Whittingham, Linda A., Willerslev, Eske, Williams, Allison E., Wood, Stephen A., Woodhams, Douglas C., Yang, Yeqin, Zaneveld, Jesse, Zarraonaindia, Iratxe, Zhang, Qikun, and Zhao, Hongxia. “A communal catalogue reveals Earth’s multiscale microbial diversity”. Nature 551.7681 (2017): 457-463.

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The Microbial Landscape of Sea Stars and the Anatomical and Interspecies Variability of Their Microbiome.
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Nano-Sized and Filterable Bacteria and Archaea: Biodiversity and Function.
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Metagenomic Approaches for Understanding New Concepts in Microbial Science.
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Microbial effects of livestock manure fertilization on freshwater aquaculture ponds rearing tilapia (Oreochromis shiranus) and North African catfish (Clarias gariepinus).
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Detecting eukaryotic microbiota with single-cell sensitivity in human tissue.
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Differential Activation of Hepatic Invariant NKT Cell Subsets Plays a Key Role in Progression of Nonalcoholic Steatohepatitis.
Maricic I, Marrero I, Eguchi A, Nakamura R, Johnson CD, Dasgupta S, Hernandez CD, Nguyen PS, Swafford AD, Knight R, Feldstein AE, Loomba R, Kumar V., J Immunol 201(10), 2018
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From hairballs to hypotheses-biological insights from microbial networks.
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Interaction between ferruginous clay sediment and an iron-reducing hyperthermophilic Pyrobaculum sp. in a terrestrial hot spring.
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High-Throughput Miniaturized 16S rRNA Amplicon Library Preparation Reduces Costs while Preserving Microbiome Integrity.
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Identifying and Predicting Novelty in Microbiome Studies.
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Evaluating the Information Content of Shallow Shotgun Metagenomics.
Hillmann B, Al-Ghalith GA, Shields-Cutler RR, Zhu Q, Gohl DM, Beckman KB, Knight R, Knights D., mSystems 3(6), 2018
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The murine vaginal microbiota and its perturbation by the human pathogen group B Streptococcus.
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SEDE-GPS: socio-economic data enrichment based on GPS information.
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Gut microbial features can predict host phenotype response to protein deficiency.
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PMID: 27388460
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