26 Publikationen
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934274Meyer, Fernando, Bremges, Andreas, Belmann, Peter, Janssen, Stefan, McHardy, Alice C, and Koslicki, David. 2019. “Assessing taxonomic metagenome profilers with OPAL”. Genome biology 20 (1): 51.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941280Zhu, Qiyun, Mai, Uyen, Pfeiffer, Wayne, Janssen, Stefan, Asnicar, Francesco, Sanders, Jon G., Belda-Ferre, Pedro, et al. 2019. “Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea”. Nature Communications 10 (1): 5477.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941281Bouslimani, Amina, da Silva, Ricardo, Kosciolek, Tomasz, Janssen, Stefan, Callewaert, Chris, Amir, Amnon, Dorrestein, Kathleen, et al. 2019. “The impact of skin care products on skin chemistry and microbiome dynamics”. BMC Biology 17 (1): 47.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934328Iszatt, Nina, Janssen, Stefan, Lenters, Virissa, Dahl, Cecilie, Stigum, Hein, Knight, Rob, Mandal, Siddhartha, et al. 2019. “Environmental toxicants in breast milk of Norwegian mothers and gut bacteria composition and metabolites in their infants at 1 month”. Microbiome 7 (1): 34.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921267McDonald, Daniel, Hyde, Embriette, Debelius, Justine W., Morton, James T., Gonzalez, Antonio, Ackermann, Gail, Aksenov, Alexander A., et al. 2018. “American Gut: an Open Platform for Citizen Science Microbiome Research”. mSystems 3 (3): e00031-18.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921270Minich, Jeremiah J., Zhu, Qiyun, Janssen, Stefan, Hendrickson, Ryan, Amir, Amnon, Vetter, Russ, Hyde, John, et al. 2018. “KatharoSeq Enables High-Throughput Microbiome Analysis from Low-Biomass Samples”. mSystems 3 (3): e00218-17.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921268Janssen, Stefan, McDonald, Daniel, Gonzalez, Antonio, Navas-Molina, Jose A., Jiang, Lingjing, Xu, Zhenjiang Zech, Winker, Kevin, et al. 2018. “Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information”. mSystems 3 (3): e00021-18.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921273Kapono, Clifford A., Morton, James T., Bouslimani, Amina, Melnik, Alexey V., Orlinsky, Kayla, Knaan, Tal Luzzatto, Garg, Neha, et al. 2018. “Creating a 3D microbial and chemical snapshot of a human habitat”. Scientific Reports 8 (1): 3669.
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2018 | Preprint | Veröffentlicht | PUB-ID: 2931839Bolyen, Evan, Rideout, Jai Ram, Dillon, Matthew R, Bokulich, Nicholas A, Abnet, Christian, Al-Ghalith, Gabriel A, Alexander, Harriet, et al. 2018. “QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science”. PeerJ.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931438Gonzalez, Antonio, Navas-Molina, Jose A., Kosciolek, Tomasz, McDonald, Daniel, Vázquez-Baeza, Yoshiki, Ackermann, Gail, DeReus, Jeff, et al. 2018. “Qiita: rapid, web-enabled microbiome meta-analysis”. Nature Methods 15 (10): 796-798.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914868Thompson, Luke R., Sanders, Jon G., McDonald, Daniel, Amir, Amnon, Ladau, Joshua, Locey, Kenneth J., Prill, Robert J., et al. 2017. “A communal catalogue reveals Earth’s multiscale microbial diversity”. Nature 551 (7681): 457-463.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914367Sczyrba, Alexander, Hofmann, Peter, Belmann, Peter, Koslicki, David, Janssen, Stefan, Dröge, Johannes, Gregor, Ivan, et al. 2017. “Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software”. Nature Methods 14 (11): 1063-1071.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907305Sampson, Timothy R, Debelius, Justine W, Thron, Taren, Janssen, Stefan, Shastri, Gauri G, Ilhan, Zehra Esra, Challis, Collin, et al. 2016. “Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson's Disease”. Cell 167 (6): 1469-1480.e12.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2700599Janssen, Stefan, and Giegerich, Robert. 2014. “The RNA shapes studio”. Bioinformatics 31 (3): 423-425.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2551798Sauthoff, Georg, Mohl, Mathias, Janssen, Stefan, and Giegerich, Robert. 2013. “Bellman's GAP -- a Language and Compiler for Dynamic Programming in Sequence Analysis”. Bioinformatics 29 (5): 551-560.
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2012 | Sammelwerksbeitrag | PUB-ID: 2439665Janssen, Stefan, and Giegerich, Robert. 2012. “Abstract Shape Analysis of RNA”. In RNA Bioinformatics t.b.a., ed. Jan Gorodkin and Zasha Weinberg, 1-35.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2410526Janssen, Stefan, Schudoma, Christian, Steger, Gerhard, and Giegerich, Robert. 2011. “Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction”. BMC Bioinformatics 12 (1): 429.
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2310489Sauthoff, Georg, Janssen, Stefan, and Giegerich, Robert. 2011. “Bellman's GAP: a declarative language for dynamic programming”. In Proceedings of the 13th international ACM SIGPLAN symposium on Principles and practices of declarative programming, 29-40. New York, NY, USA: ACM.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785497Schlüter, Jan-Philip, Reinkensmeier, Jan, Daschkey, Svenja, Evguenieva-Hackenberg, Elena, Janssen, Stefan, Jaenicke, Sebastian, Becker, Joerg D., Giegerich, Robert, and Becker, Anke. 2010. “A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti”. BMC Genomics 11 (1): 245.
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2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1893988Grond, Florian, Janssen, Stefan, Schirmer, Stefanie, and Hermann, Thomas. 2010. “Browsing RNA Structures by Interactive Sonification”. In Proceedings of the 3rd Interactive Sonification Workshop, ed. Roberto Bresin, Thomas Hermann, and Andy Hunt, 11-16. KTH, Stockholm, Sweden: KTH School of Computer Science and Communication (CSC).
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2010 | Datenpublikation | PUB-ID: 2698354Grond, Florian, Janssen, Stefan, Schirmer, Stefanie, and Hermann, Thomas. 2010. Supplementary Material for "Browsing RNA Structures by Interactive Sonification". Bielefeld University.
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2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1894008Theis, Corinna, Janssen, Stefan, and Giegerich, Robert. 2010. “Prediction of RNA Secondary Structure Including Kissing Hairpin Motifs”. In Algorithms in Bioinformatics. 10th international workshop (WABI 2010), proceedings, ed. Vincent Moulton and Mona Singh, 6293:52-64. Lecture Notes in Bioinformatics. Berlin: Springer.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1893917Janssen, Stefan, Reeder, Jens, and Giegerich, Robert. 2008. “Shape based indexing for faster search of RNA family databases”. BMC Bioinformatics 9 (1): 131.