PUB - Publikationen an der Universität Bielefeld

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• [26]
  

  2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934274

  Meyer, F., Bremges, A., Belmann, P., Janssen, S., McHardy, A. C., and Koslicki, D. (2019). Assessing taxonomic metagenome profilers with OPAL. Genome biology 20:51.

  PUB | DOI | WoS | PubMed | Europe PMC | Preprint
   
• [25]
  

  2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941280

  Zhu, Q., Mai, U., Pfeiffer, W., Janssen, S., Asnicar, F., Sanders, J. G., Belda-Ferre, P., Al-Ghalith, G. A., Kopylova, E., McDonald, D., et al. (2019). Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea. Nature Communications 10:5477.

  PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
   
• [24]
  

  2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941281

  Bouslimani, A., da Silva, R., Kosciolek, T., Janssen, S., Callewaert, C., Amir, A., Dorrestein, K., Melnik, A. V., Zaramela, L. S., Kim, J. - N., et al. (2019). The impact of skin care products on skin chemistry and microbiome dynamics. BMC Biology 17:47.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [23]
  

  2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934328

  Iszatt, N., Janssen, S., Lenters, V., Dahl, C., Stigum, H., Knight, R., Mandal, S., Peddada, S., González, A., Midtvedt, T., et al. (2019). Environmental toxicants in breast milk of Norwegian mothers and gut bacteria composition and metabolites in their infants at 1 month. Microbiome 7:34.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [22]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921267

  McDonald, D., Hyde, E., Debelius, J. W., Morton, J. T., Gonzalez, A., Ackermann, G., Aksenov, A. A., Behsaz, B., Brennan, C., Chen, Y., et al. (2018). American Gut: an Open Platform for Citizen Science Microbiome Research. mSystems 3, e00031-18.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [21]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921270

  Minich, J. J., Zhu, Q., Janssen, S., Hendrickson, R., Amir, A., Vetter, R., Hyde, J., Doty, M. M., Stillwell, K., Benardini, J., et al. (2018). KatharoSeq Enables High-Throughput Microbiome Analysis from Low-Biomass Samples. mSystems 3, e00218-17.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [20]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921268

  Janssen, S., McDonald, D., Gonzalez, A., Navas-Molina, J. A., Jiang, L., Xu, Z. Z., Winker, K., Kado, D. M., Orwoll, E., Manary, M., et al. (2018). Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information. mSystems 3, e00021-18.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [19]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921273

  Kapono, C. A., Morton, J. T., Bouslimani, A., Melnik, A. V., Orlinsky, K., Knaan, T. L., Garg, N., Vázquez-Baeza, Y., Protsyuk, I., Janssen, S., et al. (2018). Creating a 3D microbial and chemical snapshot of a human habitat. Scientific Reports 8:3669.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [18]
  

  2018 | Preprint | Veröffentlicht | PUB-ID: 2931839

  Bolyen, E., Rideout, J. R., Dillon, M. R., Bokulich, N. A., Abnet, C., Al-Ghalith, G. A., Alexander, H., Alm, E. J., Arumugam, M., Asnicar, F., et al. (2018). QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science. PeerJ.

  PUB | DOI
   
• [17]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931438

  Gonzalez, A., Navas-Molina, J. A., Kosciolek, T., McDonald, D., Vázquez-Baeza, Y., Ackermann, G., DeReus, J., Janssen, S., Swafford, A. D., Orchanian, S. B., et al. (2018). Qiita: rapid, web-enabled microbiome meta-analysis. Nature Methods 15, 796-798.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [16]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914868

  Thompson, L. R., Sanders, J. G., McDonald, D., Amir, A., Ladau, J., Locey, K. J., Prill, R. J., Tripathi, A., Gibbons, S. M., Ackermann, G., et al. (2017). A communal catalogue reveals Earth’s multiscale microbial diversity. Nature 551, 457-463.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [15]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914367

  Sczyrba, A., Hofmann, P., Belmann, P., Koslicki, D., Janssen, S., Dröge, J., Gregor, I., Majda, S., Fiedler, J., Dahms, E., et al. (2017). Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software. Nature Methods 14, 1063-1071.

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• [14]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907305

  Sampson, T. R., Debelius, J. W., Thron, T., Janssen, S., Shastri, G. G., Ilhan, Z. E., Challis, C., Schretter, C. E., Rocha, S., Gradinaru, V., et al. (2016). Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson's Disease. Cell 167, 1469-1480.e12.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [13]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764888

  Janssen, S., and Giegerich, R. (2015). Ambivalent covariance models. BMC Bioinformatics 16:178.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [12]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2700599

  Janssen, S., and Giegerich, R. (2014). The RNA shapes studio. Bioinformatics 31, 423-425.

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• [11]
  

  2014 | Bielefelder E-Dissertation | PUB-ID: 2682131

  Janssen, S. (2014). Kisses, ambivalent models and more: Contributions to the analysis of RNA secondary structure. Bielefeld: Universitätsbibliothek.

  PUB | PDF
   
• [10]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2551798

  Sauthoff, G., Mohl, M., Janssen, S., and Giegerich, R. (2013). Bellman's GAP -- a Language and Compiler for Dynamic Programming in Sequence Analysis. Bioinformatics 29, 551-560.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [9]
  

  2012 | Sammelwerksbeitrag | PUB-ID: 2439665

  Janssen, S., and Giegerich, R. (2012). “Abstract Shape Analysis of RNA” in RNA Bioinformatics t.b.a., Gorodkin, J., and Weinberg, Z. eds. 1-35.

  PUB
   
• [8]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2410526

  Janssen, S., Schudoma, C., Steger, G., and Giegerich, R. (2011). Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction. BMC Bioinformatics 12:429.

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• [7]
  

  2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2310489

  Sauthoff, G., Janssen, S., and Giegerich, R. (2011). “Bellman's GAP: a declarative language for dynamic programming” in Proceedings of the 13th international ACM SIGPLAN symposium on Principles and practices of declarative programming (New York, NY, USA: ACM), 29-40.

  PUB | DOI | Download (ext.)
   
• [6]
  

  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785497

  Schlüter, J. - P., Reinkensmeier, J., Daschkey, S., Evguenieva-Hackenberg, E., Janssen, S., Jaenicke, S., Becker, J. D., Giegerich, R., and Becker, A. (2010). A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti. BMC Genomics 11:245.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [5]
  

  2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1893988

  Grond, F., Janssen, S., Schirmer, S., and Hermann, T. (2010). “Browsing RNA Structures by Interactive Sonification” in Proceedings of the 3rd Interactive Sonification Workshop, Bresin, R., Hermann, T., and Hunt, A. eds. (KTH, Stockholm, Sweden: KTH School of Computer Science and Communication (CSC), 11-16.

  PUB | Datei | Download (ext.)
   
• [4]
  

  2010 | Datenpublikation | PUB-ID: 2698354

  Grond, F., Janssen, S., Schirmer, S., and Hermann, T. (2010). Supplementary Material for "Browsing RNA Structures by Interactive Sonification". Bielefeld University.

  PUB | Dateien verfügbar | DOI
   
• [3]
  

  2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1894008

  Theis, C., Janssen, S., and Giegerich, R. (2010). “Prediction of RNA Secondary Structure Including Kissing Hairpin Motifs” in Algorithms in Bioinformatics. 10th international workshop (WABI 2010), proceedings, Moulton, V., and Singh, M. eds. Lecture Notes in Bioinformatics, vol. 6293, (Berlin: Springer), 52-64.

  PUB | Datei | DOI
   
• [2]
  

  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1893946

  Janssen, S., and Giegerich, R. (2010). Faster computation of exact RNA shape probabilities. Bioinformatics 26, 632-639.

  PUB | Datei | DOI | WoS | PubMed | Europe PMC
   
• [1]
  

  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1893917

  Janssen, S., Reeder, J., and Giegerich, R. (2008). Shape based indexing for faster search of RNA family databases. BMC Bioinformatics 9, 131.

  PUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC