26 Publikationen

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  • [26]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934274
    Meyer, F., Bremges, A., Belmann, P., Janssen, S., McHardy, A. C., & Koslicki, D. (2019). Assessing taxonomic metagenome profilers with OPAL. Genome biology, 20(1), 51. https://doi.org/10.1186/s13059-019-1646-y
    PUB | DOI | WoS | PubMed | Europe PMC | Preprint
     
  • [25]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941280
    Zhu, Q., Mai, U., Pfeiffer, W., Janssen, S., Asnicar, F., Sanders, J. G., Belda-Ferre, P., et al. (2019). Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea. Nature Communications, 10(1), 5477. doi:10.1038/s41467-019-13443-4
    PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [24]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941281
    Bouslimani, A., da Silva, R., Kosciolek, T., Janssen, S., Callewaert, C., Amir, A., Dorrestein, K., et al. (2019). The impact of skin care products on skin chemistry and microbiome dynamics. BMC Biology, 17(1), 47. doi:10.1186/s12915-019-0660-6
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [23]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934328
    Iszatt, N., Janssen, S., Lenters, V., Dahl, C., Stigum, H., Knight, R., Mandal, S., et al. (2019). Environmental toxicants in breast milk of Norwegian mothers and gut bacteria composition and metabolites in their infants at 1 month. Microbiome, 7(1), 34. doi:10.1186/s40168-019-0645-2
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [22]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921267
    McDonald, D., Hyde, E., Debelius, J. W., Morton, J. T., Gonzalez, A., Ackermann, G., Aksenov, A. A., et al. (2018). American Gut: an Open Platform for Citizen Science Microbiome Research. mSystems, 3(3), e00031-18. https://doi.org/10.1128/msystems.00031-18
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [21]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921270
    Minich, J. J., Zhu, Q., Janssen, S., Hendrickson, R., Amir, A., Vetter, R., Hyde, J., et al. (2018). KatharoSeq Enables High-Throughput Microbiome Analysis from Low-Biomass Samples. mSystems, 3(3), e00218-17. https://doi.org/10.1128/msystems.00218-17
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [20]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921268
    Janssen, S., McDonald, D., Gonzalez, A., Navas-Molina, J. A., Jiang, L., Xu, Z. Z., Winker, K., et al. (2018). Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information. mSystems, 3(3), e00021-18. doi:10.1128/msystems.00021-18
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [19]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921273
    Kapono, C. A., Morton, J. T., Bouslimani, A., Melnik, A. V., Orlinsky, K., Knaan, T. L., Garg, N., et al. (2018). Creating a 3D microbial and chemical snapshot of a human habitat. Scientific Reports, 8(1), 3669. doi:10.1038/s41598-018-21541-4
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [18]
    2018 | Preprint | Veröffentlicht | PUB-ID: 2931839
    Bolyen, E., Rideout, J. R., Dillon, M. R., Bokulich, N. A., Abnet, C., Al-Ghalith, G. A., Alexander, H., et al. (2018). QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science. PeerJ. doi:10.7287/peerj.preprints.27295v1
    PUB | DOI
     
  • [17]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931438
    Gonzalez, A., Navas-Molina, J. A., Kosciolek, T., McDonald, D., Vázquez-Baeza, Y., Ackermann, G., DeReus, J., et al. (2018). Qiita: rapid, web-enabled microbiome meta-analysis. Nature Methods, 15(10), 796-798. doi:10.1038/s41592-018-0141-9
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [16]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914868
    Thompson, L. R., Sanders, J. G., McDonald, D., Amir, A., Ladau, J., Locey, K. J., Prill, R. J., et al. (2017). A communal catalogue reveals Earth’s multiscale microbial diversity. Nature, 551(7681), 457-463. https://doi.org/10.1038/nature24621
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [15]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914367
    Sczyrba, A., Hofmann, P., Belmann, P., Koslicki, D., Janssen, S., Dröge, J., Gregor, I., et al. (2017). Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software. Nature Methods, 14(11), 1063-1071. https://doi.org/10.1038/nmeth.4458
    PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [14]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907305
    Sampson, T. R., Debelius, J. W., Thron, T., Janssen, S., Shastri, G. G., Ilhan, Z. E., Challis, C., et al. (2016). Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson's Disease. Cell, 167(6), 1469-1480.e12. doi:10.1016/j.cell.2016.11.018
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [13]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764888 OA
    Janssen, S., & Giegerich, R. (2015). Ambivalent covariance models. BMC Bioinformatics, 16(1), 178. doi:10.1186/s12859-015-0569-1
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [12]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2700599
    Janssen, S., & Giegerich, R. (2014). The RNA shapes studio. Bioinformatics, 31(3), 423-425. doi:10.1093/bioinformatics/btu649
    PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [11]
    2014 | Bielefelder E-Dissertation | PUB-ID: 2682131 OA
    Janssen, S. (2014). Kisses, ambivalent models and more: Contributions to the analysis of RNA secondary structure.. Bielefeld: Universitätsbibliothek.
    PUB | PDF
     
  • [10]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2551798
    Sauthoff, G., Mohl, M., Janssen, S., & Giegerich, R. (2013). Bellman's GAP -- a Language and Compiler for Dynamic Programming in Sequence Analysis. Bioinformatics, 29(5), 551-560. doi:10.1093/bioinformatics/btt022
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [9]
    2012 | Sammelwerksbeitrag | PUB-ID: 2439665
    Janssen, S., & Giegerich, R. (2012). Abstract Shape Analysis of RNA. In J. Gorodkin & Z. Weinberg (Eds.), RNA Bioinformatics t.b.a. (pp. 1-35).
    PUB
     
  • [8]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2410526 OA
    Janssen, S., Schudoma, C., Steger, G., & Giegerich, R. (2011). Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction. BMC Bioinformatics, 12(1), 429. https://doi.org/10.1186/1471-2105-12-429
    PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [7]
    2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2310489
    Sauthoff, G., Janssen, S., & Giegerich, R. (2011). Bellman's GAP: a declarative language for dynamic programming. Proceedings of the 13th international ACM SIGPLAN symposium on Principles and practices of declarative programming, 29-40. New York, NY, USA: ACM. https://doi.org/10.1145/2003476.2003484
    PUB | DOI | Download (ext.)
     
  • [6]
    2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785497 OA
    Schlüter, J. - P., Reinkensmeier, J., Daschkey, S., Evguenieva-Hackenberg, E., Janssen, S., Jaenicke, S., Becker, J. D., et al. (2010). A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti. BMC Genomics, 11(1), 245. https://doi.org/10.1186/1471-2164-11-245
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [5]
    2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1893988 OA
    Grond, F., Janssen, S., Schirmer, S., & Hermann, T. (2010). Browsing RNA Structures by Interactive Sonification. In R. Bresin, T. Hermann, & A. Hunt (Eds.), Proceedings of the 3rd Interactive Sonification Workshop (pp. 11-16). KTH, Stockholm, Sweden: KTH School of Computer Science and Communication (CSC).
    PUB | Datei | Download (ext.)
     
  • [4]
    2010 | Datenpublikation | PUB-ID: 2698354 OA
    Grond, F., Janssen, S., Schirmer, S., & Hermann, T. (2010). Supplementary Material for "Browsing RNA Structures by Interactive Sonification". Bielefeld University. doi:10.4119/unibi/2698354
    PUB | Dateien verfügbar | DOI
     
  • [3]
    2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1894008 OA
    Theis, C., Janssen, S., & Giegerich, R. (2010). Prediction of RNA Secondary Structure Including Kissing Hairpin Motifs. In V. Moulton & M. Singh (Eds.), Lecture Notes in Bioinformatics: Vol. 6293. Algorithms in Bioinformatics. 10th international workshop (WABI 2010), proceedings (pp. 52-64). Berlin: Springer. https://doi.org/10.1007/978-3-642-15294-8_5
    PUB | Datei | DOI
     
  • [2]
    2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1893946 OA
    Janssen, S., & Giegerich, R. (2010). Faster computation of exact RNA shape probabilities. Bioinformatics, 26(5), 632-639. https://doi.org/10.1093/bioinformatics/btq014
    PUB | Datei | DOI | WoS | PubMed | Europe PMC
     
  • [1]
    2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1893917 OA
    Janssen, S., Reeder, J., & Giegerich, R. (2008). Shape based indexing for faster search of RNA family databases. BMC Bioinformatics, 9(1), 131. https://doi.org/10.1186/1471-2105-9-131
    PUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
     

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