26 Publikationen
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934274Meyer, F., Bremges, A., Belmann, P., Janssen, S., McHardy, A. C., & Koslicki, D. (2019). Assessing taxonomic metagenome profilers with OPAL. Genome biology, 20(1), 51. https://doi.org/10.1186/s13059-019-1646-y
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941280Zhu, Q., Mai, U., Pfeiffer, W., Janssen, S., Asnicar, F., Sanders, J. G., Belda-Ferre, P., et al. (2019). Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea. Nature Communications, 10(1), 5477. doi:10.1038/s41467-019-13443-4
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941281Bouslimani, A., da Silva, R., Kosciolek, T., Janssen, S., Callewaert, C., Amir, A., Dorrestein, K., et al. (2019). The impact of skin care products on skin chemistry and microbiome dynamics. BMC Biology, 17(1), 47. doi:10.1186/s12915-019-0660-6
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934328Iszatt, N., Janssen, S., Lenters, V., Dahl, C., Stigum, H., Knight, R., Mandal, S., et al. (2019). Environmental toxicants in breast milk of Norwegian mothers and gut bacteria composition and metabolites in their infants at 1 month. Microbiome, 7(1), 34. doi:10.1186/s40168-019-0645-2
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921267McDonald, D., Hyde, E., Debelius, J. W., Morton, J. T., Gonzalez, A., Ackermann, G., Aksenov, A. A., et al. (2018). American Gut: an Open Platform for Citizen Science Microbiome Research. mSystems, 3(3), e00031-18. https://doi.org/10.1128/msystems.00031-18
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921270Minich, J. J., Zhu, Q., Janssen, S., Hendrickson, R., Amir, A., Vetter, R., Hyde, J., et al. (2018). KatharoSeq Enables High-Throughput Microbiome Analysis from Low-Biomass Samples. mSystems, 3(3), e00218-17. https://doi.org/10.1128/msystems.00218-17
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921268Janssen, S., McDonald, D., Gonzalez, A., Navas-Molina, J. A., Jiang, L., Xu, Z. Z., Winker, K., et al. (2018). Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information. mSystems, 3(3), e00021-18. doi:10.1128/msystems.00021-18
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2921273Kapono, C. A., Morton, J. T., Bouslimani, A., Melnik, A. V., Orlinsky, K., Knaan, T. L., Garg, N., et al. (2018). Creating a 3D microbial and chemical snapshot of a human habitat. Scientific Reports, 8(1), 3669. doi:10.1038/s41598-018-21541-4
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2018 | Preprint | Veröffentlicht | PUB-ID: 2931839Bolyen, E., Rideout, J. R., Dillon, M. R., Bokulich, N. A., Abnet, C., Al-Ghalith, G. A., Alexander, H., et al. (2018). QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science. PeerJ. doi:10.7287/peerj.preprints.27295v1
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931438Gonzalez, A., Navas-Molina, J. A., Kosciolek, T., McDonald, D., Vázquez-Baeza, Y., Ackermann, G., DeReus, J., et al. (2018). Qiita: rapid, web-enabled microbiome meta-analysis. Nature Methods, 15(10), 796-798. doi:10.1038/s41592-018-0141-9
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914868Thompson, L. R., Sanders, J. G., McDonald, D., Amir, A., Ladau, J., Locey, K. J., Prill, R. J., et al. (2017). A communal catalogue reveals Earth’s multiscale microbial diversity. Nature, 551(7681), 457-463. https://doi.org/10.1038/nature24621
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914367Sczyrba, A., Hofmann, P., Belmann, P., Koslicki, D., Janssen, S., Dröge, J., Gregor, I., et al. (2017). Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software. Nature Methods, 14(11), 1063-1071. https://doi.org/10.1038/nmeth.4458
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907305Sampson, T. R., Debelius, J. W., Thron, T., Janssen, S., Shastri, G. G., Ilhan, Z. E., Challis, C., et al. (2016). Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson's Disease. Cell, 167(6), 1469-1480.e12. doi:10.1016/j.cell.2016.11.018
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2700599Janssen, S., & Giegerich, R. (2014). The RNA shapes studio. Bioinformatics, 31(3), 423-425. doi:10.1093/bioinformatics/btu649
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2551798Sauthoff, G., Mohl, M., Janssen, S., & Giegerich, R. (2013). Bellman's GAP -- a Language and Compiler for Dynamic Programming in Sequence Analysis. Bioinformatics, 29(5), 551-560. doi:10.1093/bioinformatics/btt022
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2012 | Sammelwerksbeitrag | PUB-ID: 2439665Janssen, S., & Giegerich, R. (2012). Abstract Shape Analysis of RNA. In J. Gorodkin & Z. Weinberg (Eds.), RNA Bioinformatics t.b.a. (pp. 1-35).
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2410526Janssen, S., Schudoma, C., Steger, G., & Giegerich, R. (2011). Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction. BMC Bioinformatics, 12(1), 429. https://doi.org/10.1186/1471-2105-12-429
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2310489Sauthoff, G., Janssen, S., & Giegerich, R. (2011). Bellman's GAP: a declarative language for dynamic programming. Proceedings of the 13th international ACM SIGPLAN symposium on Principles and practices of declarative programming, 29-40. New York, NY, USA: ACM. https://doi.org/10.1145/2003476.2003484
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785497Schlüter, J. - P., Reinkensmeier, J., Daschkey, S., Evguenieva-Hackenberg, E., Janssen, S., Jaenicke, S., Becker, J. D., et al. (2010). A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti. BMC Genomics, 11(1), 245. https://doi.org/10.1186/1471-2164-11-245
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2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1893988Grond, F., Janssen, S., Schirmer, S., & Hermann, T. (2010). Browsing RNA Structures by Interactive Sonification. In R. Bresin, T. Hermann, & A. Hunt (Eds.), Proceedings of the 3rd Interactive Sonification Workshop (pp. 11-16). KTH, Stockholm, Sweden: KTH School of Computer Science and Communication (CSC).
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2010 | Datenpublikation | PUB-ID: 2698354Grond, F., Janssen, S., Schirmer, S., & Hermann, T. (2010). Supplementary Material for "Browsing RNA Structures by Interactive Sonification". Bielefeld University. doi:10.4119/unibi/2698354
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2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1894008Theis, C., Janssen, S., & Giegerich, R. (2010). Prediction of RNA Secondary Structure Including Kissing Hairpin Motifs. In V. Moulton & M. Singh (Eds.), Lecture Notes in Bioinformatics: Vol. 6293. Algorithms in Bioinformatics. 10th international workshop (WABI 2010), proceedings (pp. 52-64). Berlin: Springer. https://doi.org/10.1007/978-3-642-15294-8_5
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1893946Janssen, S., & Giegerich, R. (2010). Faster computation of exact RNA shape probabilities. Bioinformatics, 26(5), 632-639. https://doi.org/10.1093/bioinformatics/btq014
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1893917Janssen, S., Reeder, J., & Giegerich, R. (2008). Shape based indexing for faster search of RNA family databases. BMC Bioinformatics, 9(1), 131. https://doi.org/10.1186/1471-2105-9-131