Assessing taxonomic metagenome profilers with OPAL
Meyer F, Bremges A, Belmann P, Janssen S, McHardy AC, Koslicki D (2019)
Genome biology 20(1): 51.
Zeitschriftenaufsatz
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Autor*in
Meyer, Fernando;
Bremges, Andreas;
Belmann, PeterUniBi;
Janssen, StefanUniBi 
;
McHardy, Alice C;
Koslicki, David
;
McHardy, Alice C;
Koslicki, DavidEinrichtung
Abstract / Bemerkung
The explosive growth in taxonomic metagenome profiling methods over the past years has created a need for systematic comparisons using relevant performance criteria. The Open-community Profiling Assessment tooL (OPAL) implements commonly used performance metrics, including those of the first challenge of the initiative for the Critical Assessment of Metagenome Interpretation (CAMI), together with convenient visualizations. In addition, we perform in-depth performance comparisons with seven profilers on datasets of CAMI and the Human Microbiome Project. OPAL is freely available at https://github.com/CAMI-challenge/OPAL .
Erscheinungsjahr
2019
Zeitschriftentitel
Genome biology
Band
20
Ausgabe
1
Art.-Nr.
51
ISSN
1474-760X
Page URI
https://pub.uni-bielefeld.de/record/2934274
Zitieren
Meyer F, Bremges A, Belmann P, Janssen S, McHardy AC, Koslicki D. Assessing taxonomic metagenome profilers with OPAL. Genome biology. 2019;20(1): 51.
Meyer, F., Bremges, A., Belmann, P., Janssen, S., McHardy, A. C., & Koslicki, D. (2019). Assessing taxonomic metagenome profilers with OPAL. Genome biology, 20(1), 51. https://doi.org/10.1186/s13059-019-1646-y
Meyer, Fernando, Bremges, Andreas, Belmann, Peter, Janssen, Stefan, McHardy, Alice C, and Koslicki, David. 2019. “Assessing taxonomic metagenome profilers with OPAL”. Genome biology 20 (1): 51.
Meyer, F., Bremges, A., Belmann, P., Janssen, S., McHardy, A. C., and Koslicki, D. (2019). Assessing taxonomic metagenome profilers with OPAL. Genome biology 20:51.
Meyer, F., et al., 2019. Assessing taxonomic metagenome profilers with OPAL. Genome biology, 20(1): 51.
F. Meyer, et al., “Assessing taxonomic metagenome profilers with OPAL”, Genome biology, vol. 20, 2019, : 51.
Meyer, F., Bremges, A., Belmann, P., Janssen, S., McHardy, A.C., Koslicki, D.: Assessing taxonomic metagenome profilers with OPAL. Genome biology. 20, : 51 (2019).
Meyer, Fernando, Bremges, Andreas, Belmann, Peter, Janssen, Stefan, McHardy, Alice C, and Koslicki, David. “Assessing taxonomic metagenome profilers with OPAL”. Genome biology 20.1 (2019): 51.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
Zitationen in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
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