Marília Dias Vieira Braga

mbraga@cebitec.uni-bielefeld.de
PEVZ-ID
61889960

18 Publikationen

Alle markieren

[18]
2020 | Preprint | Veröffentlicht | PUB-ID: 2939861
Computing the rearrangement distance of natural genomes
Bohnenkämper L, Dias Vieira Braga M, Dörr D, Stoye J (2020)
arXiv:2001.02139.
PUB | Download (ext.) | arXiv
 
[17]
2020 | Zeitschriftenaufsatz | Angenommen | PUB-ID: 2942686
Computing the Inversion-Indel Distance
Willing E, Stoye J, Dias Vieira Braga M (Accepted)
IEEE/ACM Transactions on Computational Biology and Bioinformatics.
PUB | arXiv
 
[16]
2020 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2939729
Computing the rearrangement distance of natural genomes
Bohnenkämper L, Dias Vieira Braga M, Dörr D, Stoye J (2020)
In: Proceedings of RECOMB 2020. LNBI, 12074. 3-18.
PUB | DOI
 
[15]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919006 OA
Computing the family-free DCJ similarity
Rubert D, Hoshino EA, Dias Vieira Braga M, Stoye J, Martinez FHV (2018)
BMC Bioinformatics 19(Suppl. 6): 152.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[14]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909057 OA
Approximating the DCJ distance of balanced genomes in linear time
Rubert D, Feijão P, Dias Vieira Braga M, Stoye J, Martinez FHV (2017)
Algorithms for Molecular Biology 12(1): 3.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[13]
2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2913015
Algorithms for Computing the Family-Free Genomic Similarity under DCJ
Rubert D, Medeiros GL, Hoshino EA, Dias Vieira Braga M, Stoye J, Martinez FHV (2017)
In: Comparative Genomics. RECOMB-CG 2017. Meidanis J, Nakhleh L (Eds); Lecture Notes in Bioinformatics, 10562. Cham: Springer Verlag: 76-100.
PUB | DOI
 
[12]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916552
Genomic Distance with High Indel Costs
da Silva PH, Machado R, Dantas S, Dias Vieira Braga M (2017)
IEEE/ACM Transactions on Computational Biology and Bioinformatics 14(3): 728-732.
PUB | DOI | WoS | PubMed | Europe PMC
 
[11]
2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2903708
A Linear Time Approximation Algorithm for the DCJ Distance for Genomes with Bounded Number of Duplicates
Rubert D, Feijão P, Dias Vieira Braga M, Stoye J, Martinez FHV (2016)
In: Algorithms in Bioinformatics. WABI 2016. Frith M, Storm Pedersen CN (Eds); Lecture Notes in Bioinformatics, 9838. Cham: Springer: 293-306.
PUB | DOI
 
[10]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2726366 OA
On the family-free DCJ distance and similarity
Viduani Martinez FH, Feijão P, Dias Vieira Braga M, Stoye J (2015)
Algorithms for Molecular Biology 10(1): 13.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[9]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2677844
Sorting linear genomes with rearrangements and indels
Dias Vieira Braga M, Stoye J (2015)
IEEE/ACM Transactions on Computational Biology and Bioinformatics 12(3): 500-506.
PUB | DOI | WoS | PubMed | Europe PMC
 
[8]
2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2611648
The Potential of Family-Free Genome Comparison
Dias Vieira Braga M, Chauve C, Dörr D, Jahn K, Stoye J, Thévenin A, Wittler R (2013)
In: Models and Algorithms for Genome Evolution. Chauve C, El-Mabrouk N, Tannier E (Eds); Computational Biology Series, 19. London: Springer Verlag: 287-307.
PUB | DOI
 
[7]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2091794
Double Cut and Join with Insertions and Deletions
Dias Vieira Braga M, Willing E, Stoye J (2011)
Journal of Computational Biology 18(9): 1167-1184.
PUB | DOI | WoS | PubMed | Europe PMC
 
[6]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2091790
Restricted DCJ Model. Rearrangement Problems with Chromosome Reincorporation
Kovac J, Warren R, Dias Vieira Braga M, Stoye J (2011)
Journal of Computational Biology 18(9): 1231-1241.
PUB | DOI | WoS | PubMed | Europe PMC
 
[5]
2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919216
The Problem of Chromosome Reincorporation in DCJ Sorting and Halving
Kovac J, Dias Vieira Braga M, Stoye J (2010)
In: Proc. of Recomb-CG 2010. LNBI, 6398. 13-24.
PUB | DOI
 
[4]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1898025
The Solution Space of Sorting by DCJ
Dias Vieira Braga M, Stoye J (2010)
Journal of Computational Biology 17(9): 1145-1165.
PUB | DOI | WoS | PubMed | Europe PMC
 
[3]
2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919215
Genomic Distance with DCJ and Indels
Dias Vieira Braga M, Willing E, Stoye J (2010)
In: Proc. of WABI 2010. LNBI, 6293. 90-101.
PUB | DOI
 
[2]
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919206
Counting All DCJ Sorting Scenarios
Dias Vieira Braga M, Stoye J (2009)
In: Proc. of Recomb-CG 2009. LNBI, 5817. 36-47.
PUB | DOI
 
[1]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588760 OA
An asymmetric approach to preserve common intervals while sorting by reversals
Dias Vieira Braga M, Gautier C, Sagot M-F (2009)
Algorithms for Molecular Biology 4(1): 16.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
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18 Publikationen

Alle markieren

[18]
2020 | Preprint | Veröffentlicht | PUB-ID: 2939861
Computing the rearrangement distance of natural genomes
Bohnenkämper L, Dias Vieira Braga M, Dörr D, Stoye J (2020)
arXiv:2001.02139.
PUB | Download (ext.) | arXiv
 
[17]
2020 | Zeitschriftenaufsatz | Angenommen | PUB-ID: 2942686
Computing the Inversion-Indel Distance
Willing E, Stoye J, Dias Vieira Braga M (Accepted)
IEEE/ACM Transactions on Computational Biology and Bioinformatics.
PUB | arXiv
 
[16]
2020 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2939729
Computing the rearrangement distance of natural genomes
Bohnenkämper L, Dias Vieira Braga M, Dörr D, Stoye J (2020)
In: Proceedings of RECOMB 2020. LNBI, 12074. 3-18.
PUB | DOI
 
[15]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919006 OA
Computing the family-free DCJ similarity
Rubert D, Hoshino EA, Dias Vieira Braga M, Stoye J, Martinez FHV (2018)
BMC Bioinformatics 19(Suppl. 6): 152.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[14]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909057 OA
Approximating the DCJ distance of balanced genomes in linear time
Rubert D, Feijão P, Dias Vieira Braga M, Stoye J, Martinez FHV (2017)
Algorithms for Molecular Biology 12(1): 3.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[13]
2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2913015
Algorithms for Computing the Family-Free Genomic Similarity under DCJ
Rubert D, Medeiros GL, Hoshino EA, Dias Vieira Braga M, Stoye J, Martinez FHV (2017)
In: Comparative Genomics. RECOMB-CG 2017. Meidanis J, Nakhleh L (Eds); Lecture Notes in Bioinformatics, 10562. Cham: Springer Verlag: 76-100.
PUB | DOI
 
[12]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916552
Genomic Distance with High Indel Costs
da Silva PH, Machado R, Dantas S, Dias Vieira Braga M (2017)
IEEE/ACM Transactions on Computational Biology and Bioinformatics 14(3): 728-732.
PUB | DOI | WoS | PubMed | Europe PMC
 
[11]
2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2903708
A Linear Time Approximation Algorithm for the DCJ Distance for Genomes with Bounded Number of Duplicates
Rubert D, Feijão P, Dias Vieira Braga M, Stoye J, Martinez FHV (2016)
In: Algorithms in Bioinformatics. WABI 2016. Frith M, Storm Pedersen CN (Eds); Lecture Notes in Bioinformatics, 9838. Cham: Springer: 293-306.
PUB | DOI
 
[10]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2726366 OA
On the family-free DCJ distance and similarity
Viduani Martinez FH, Feijão P, Dias Vieira Braga M, Stoye J (2015)
Algorithms for Molecular Biology 10(1): 13.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[9]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2677844
Sorting linear genomes with rearrangements and indels
Dias Vieira Braga M, Stoye J (2015)
IEEE/ACM Transactions on Computational Biology and Bioinformatics 12(3): 500-506.
PUB | DOI | WoS | PubMed | Europe PMC
 
[8]
2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2611648
The Potential of Family-Free Genome Comparison
Dias Vieira Braga M, Chauve C, Dörr D, Jahn K, Stoye J, Thévenin A, Wittler R (2013)
In: Models and Algorithms for Genome Evolution. Chauve C, El-Mabrouk N, Tannier E (Eds); Computational Biology Series, 19. London: Springer Verlag: 287-307.
PUB | DOI
 
[7]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2091794
Double Cut and Join with Insertions and Deletions
Dias Vieira Braga M, Willing E, Stoye J (2011)
Journal of Computational Biology 18(9): 1167-1184.
PUB | DOI | WoS | PubMed | Europe PMC
 
[6]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2091790
Restricted DCJ Model. Rearrangement Problems with Chromosome Reincorporation
Kovac J, Warren R, Dias Vieira Braga M, Stoye J (2011)
Journal of Computational Biology 18(9): 1231-1241.
PUB | DOI | WoS | PubMed | Europe PMC
 
[5]
2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919216
The Problem of Chromosome Reincorporation in DCJ Sorting and Halving
Kovac J, Dias Vieira Braga M, Stoye J (2010)
In: Proc. of Recomb-CG 2010. LNBI, 6398. 13-24.
PUB | DOI
 
[4]
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1898025
The Solution Space of Sorting by DCJ
Dias Vieira Braga M, Stoye J (2010)
Journal of Computational Biology 17(9): 1145-1165.
PUB | DOI | WoS | PubMed | Europe PMC
 
[3]
2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919215
Genomic Distance with DCJ and Indels
Dias Vieira Braga M, Willing E, Stoye J (2010)
In: Proc. of WABI 2010. LNBI, 6293. 90-101.
PUB | DOI
 
[2]
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919206
Counting All DCJ Sorting Scenarios
Dias Vieira Braga M, Stoye J (2009)
In: Proc. of Recomb-CG 2009. LNBI, 5817. 36-47.
PUB | DOI
 
[1]
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588760 OA
An asymmetric approach to preserve common intervals while sorting by reversals
Dias Vieira Braga M, Gautier C, Sagot M-F (2009)
Algorithms for Molecular Biology 4(1): 16.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
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