Marília Dias Vieira Braga

mbraga@cebitec.uni-bielefeld.de
PEVZ-ID
61889960

28 Publikationen

Alle markieren

  • [28]
    2024 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2990270
    Dias Vieira Braga, M., Doerr, D., Rubert, D. P., and Stoye, J. (2024). “Family-Free Genome Comparison” in Comparative Genomics. Methods and Protocols, Setubal, J. C., Stadler, P. F., and Stoye, J. eds. Methods in Molecular Biology, vol. 2802, 2nd ed. (New York, NY: Humana), 57-72.
    PUB | DOI
     
  • [27]
    2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2985702 OA
    Dias Vieira Braga, M., Brockmann, L. R., Klerx, K., and Stoye, J. (2024). Investigating the complexity of the double distance problems. Algorithms for Molecular Biology 19:1.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [26]
    2023 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2981606
    Dias Vieira Braga, M., Brockmann, L. R., Klerx, K., and Stoye, J. (2023). “On the Class of Double Distance Problems” in Comparative Genomics. 20th International Conference, RECOMB-CG 2023, Istanbul, Turkey, April 14–15, 2023, Proceedings, Jahn, K., and Vinař, T. eds. Lecture Notes in Computer Science, vol. 13883, (Cham: Springer Nature ), 35-50.
    PUB | DOI | WoS
     
  • [25]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2983338 OA
    Rubert, D., and Dias Vieira Braga, M. (2023). Efficient gene orthology inference via large-scale rearrangements. Algorithms for Molecular Biology 18:14.
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  • [24]
    2022 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2968237 OA
    Rubert, D., and Dias Vieira Braga, M. (2022). “Gene Orthology Inference via Large-Scale Rearrangements for Partially Assembled Genomes” in 22nd International Workshop on Algorithms in Bioinformatics (WABI 2022), Boucher, C., and Rahmann, S. eds. Leibniz International Proceedings in Informatics (LIPIcs), vol. 242, (Dagstuhl: Schloss Dagstuhl, Leibniz-Zentrum für Informatik).
    PUB | PDF | DOI | Download (ext.)
     
  • [23]
    2022 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2965398
    Dias Vieira Braga, M., Brockmann, L. R., Klerx, K., and Stoye, J. (2022). “A Linear Time Algorithm for an Extended Version of the Breakpoint Double Distance” in 22nd International Workshop on Algorithms in Bioinformatics (WABI 2022), Boucher, C., and Rahmann, S. eds. Leibniz International Proceedings in Informatics. LIPIcs, vol. 242, (Dagstuhl: Schloss Dagstuhl - Leibniz-Zentrum für Informatik), 13:1-13:16.
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  • [22]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2954832 OA
    Rubert, D., Martinez, F. V., and Dias Vieira Braga, M. (2021). Natural family-free genomic distance. Algorithms for molecular biology : AMB 16:4.
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  • [21]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2959611
    Rubert, D., Doerr, D., and Dias Vieira Braga, M. (2021). The potential of family-free rearrangements towards gene orthology inference. Journal of Bioinformatics and Computational Biology 19:2140014.
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  • [20]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942686
    Willing, E., Stoye, J., and Dias Vieira Braga, M. (2021). Computing the Inversion-Indel Distance. IEEE/ACM Transactions on Computational Biology and Bioinformatics 18, 2314-2326.
    PUB | DOI | WoS | PubMed | Europe PMC | arXiv
     
  • [19]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946303
    Bohnenkämper, L., Dias Vieira Braga, M., Dörr, D., and Stoye, J. (2021). Computing the rearrangement distance of natural genomes. Journal of Computational Biology 28, 410-431.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [18]
    2020 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2965072 OA
    Rubert, D., Martinez, F. V., and Dias Vieira Braga, M. (2020). “Natural Family-Free Genomic Distance” in 20th International Workshop on Algorithms in Bioinformatics (WABI 2020), Kingsford, C., and Pisanti, N. eds. Leibniz International Proceedings in Informatics (LIPIcs), vol. 172, (Dagstuhl, Germany: Schloss Dagstuhl - Leibniz-Zentrum für Informatik), 3:1-3:23.
    PUB | PDF | DOI | Download (ext.)
     
  • [17]
    2020 | Preprint | Veröffentlicht | PUB-ID: 2939861
    Bohnenkämper, L., Dias Vieira Braga, M., Dörr, D., and Stoye, J. (2020). Computing the rearrangement distance of natural genomes. arXiv:2001.02139.
    PUB | Download (ext.) | arXiv
     
  • [16]
    2020 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2939729
    Bohnenkämper, L., Dias Vieira Braga, M., Dörr, D., and Stoye, J. (2020). “Computing the rearrangement distance of natural genomes” in Proceedings of RECOMB 2020 LNBI, vol. 12074, 3-18.
    PUB | DOI
     
  • [15]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919006 OA
    Rubert, D., Hoshino, E. A., Dias Vieira Braga, M., Stoye, J., and Martinez, F. H. V. (2018). Computing the family-free DCJ similarity. BMC Bioinformatics 19:152.
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  • [14]
    2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2913015
    Rubert, D., Medeiros, G. L., Hoshino, E. A., Dias Vieira Braga, M., Stoye, J., and Martinez, F. H. V. (2017). “Algorithms for Computing the Family-Free Genomic Similarity under DCJ” in Comparative Genomics. RECOMB-CG 2017, Meidanis, J., and Nakhleh, L. eds. Lecture Notes in Bioinformatics, vol. 10562, (Cham: Springer Verlag), 76-100.
    PUB | DOI
     
  • [13]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909057 OA
    Rubert, D., Feijão, P., Dias Vieira Braga, M., Stoye, J., and Martinez, F. H. V. (2017). Approximating the DCJ distance of balanced genomes in linear time. Algorithms for Molecular Biology 12:3.
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  • [12]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916552
    da Silva, P. H., Machado, R., Dantas, S., and Dias Vieira Braga, M. (2017). Genomic Distance with High Indel Costs. IEEE/ACM Transactions on Computational Biology and Bioinformatics 14, 728-732.
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  • [11]
    2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2903708
    Rubert, D., Feijão, P., Dias Vieira Braga, M., Stoye, J., and Martinez, F. H. V. (2016). “A Linear Time Approximation Algorithm for the DCJ Distance for Genomes with Bounded Number of Duplicates” in Algorithms in Bioinformatics. WABI 2016, Frith, M., and Storm Pedersen, C. N. eds. Lecture Notes in Bioinformatics, vol. 9838, (Cham: Springer), 293-306.
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  • [10]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2726366 OA
    Viduani Martinez, F. H., Feijão, P., Dias Vieira Braga, M., and Stoye, J. (2015). On the family-free DCJ distance and similarity. Algorithms for Molecular Biology 10:13.
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  • [9]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2677844
    Dias Vieira Braga, M., and Stoye, J. (2015). Sorting linear genomes with rearrangements and indels. IEEE/ACM Transactions on Computational Biology and Bioinformatics 12, 500-506.
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  • [8]
    2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2611648
    Dias Vieira Braga, M., Chauve, C., Dörr, D., Jahn, K., Stoye, J., Thévenin, A., and Wittler, R. (2013). “The Potential of Family-Free Genome Comparison” in Models and Algorithms for Genome Evolution, Chauve, C., El-Mabrouk, N., and Tannier, E. eds. Computational Biology Series, vol. 19, (London: Springer Verlag), 287-307.
    PUB | DOI
     
  • [7]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2091794
    Dias Vieira Braga, M., Willing, E., and Stoye, J. (2011). Double Cut and Join with Insertions and Deletions. Journal of Computational Biology 18, 1167-1184.
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  • [6]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2091790
    Kovac, J., Warren, R., Dias Vieira Braga, M., and Stoye, J. (2011). Restricted DCJ Model. Rearrangement Problems with Chromosome Reincorporation. Journal of Computational Biology 18, 1231-1241.
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  • [5]
    2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919216
    Kovac, J., Dias Vieira Braga, M., and Stoye, J. (2010). “The Problem of Chromosome Reincorporation in DCJ Sorting and Halving” in Proc. of Recomb-CG 2010 LNBI, vol. 6398, 13-24.
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  • [4]
    2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1898025
    Dias Vieira Braga, M., and Stoye, J. (2010). The Solution Space of Sorting by DCJ. Journal of Computational Biology 17, 1145-1165.
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  • [3]
    2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919215
    Dias Vieira Braga, M., Willing, E., and Stoye, J. (2010). “Genomic Distance with DCJ and Indels” in Proc. of WABI 2010 LNBI, vol. 6293, 90-101.
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  • [2]
    2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919206
    Dias Vieira Braga, M., and Stoye, J. (2009). “Counting All DCJ Sorting Scenarios” in Proc. of Recomb-CG 2009 LNBI, vol. 5817, 36-47.
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  • [1]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588760 OA
    Dias Vieira Braga, M., Gautier, C., and Sagot, M. - F. (2009). An asymmetric approach to preserve common intervals while sorting by reversals. Algorithms for Molecular Biology 4, 16.
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