Marília Dias Vieira Braga

mbraga@cebitec.uni-bielefeld.de
PEVZ-ID
61889960

27 Publikationen

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  • [27]
    2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2985702
    Dias Vieira Braga, M., Brockmann, L.R., Klerx, K., Stoye, J.: Investigating the complexity of the double distance problems. Algorithms for Molecular Biology. 19, : 1 (2024).
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [26]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2983338 OA
    Rubert, D., Dias Vieira Braga, M.: Efficient gene orthology inference via large-scale rearrangements. Algorithms for Molecular Biology . 18, : 14 (2023).
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [25]
    2023 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2981606
    Dias Vieira Braga, M., Brockmann, L.R., Klerx, K., Stoye, J.: On the Class of Double Distance Problems. In: Jahn, K. and Vinař, T. (eds.) Comparative Genomics. 20th International Conference, RECOMB-CG 2023, Istanbul, Turkey, April 14–15, 2023, Proceedings. Lecture Notes in Computer Science. 13883, p. 35-50. Springer Nature , Cham (2023).
    PUB | DOI
     
  • [24]
    2022 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2968237 OA
    Rubert, D., Dias Vieira Braga, M.: Gene Orthology Inference via Large-Scale Rearrangements for Partially Assembled Genomes. In: Boucher, C. and Rahmann, S. (eds.) 22nd International Workshop on Algorithms in Bioinformatics (WABI 2022). Leibniz International Proceedings in Informatics (LIPIcs). 242, Schloss Dagstuhl, Leibniz-Zentrum für Informatik, Dagstuhl (2022).
    PUB | PDF | DOI | Download (ext.)
     
  • [23]
    2022 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2965398
    Dias Vieira Braga, M., Brockmann, L.R., Klerx, K., Stoye, J.: A Linear Time Algorithm for an Extended Version of the Breakpoint Double Distance. In: Boucher, C. and Rahmann, S. (eds.) 22nd International Workshop on Algorithms in Bioinformatics (WABI 2022). Leibniz International Proceedings in Informatics. LIPIcs. 242, p. 13:1-13:16. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, Dagstuhl (2022).
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  • [22]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2954832 OA
    Rubert, D., Martinez, F.V., Dias Vieira Braga, M.: Natural family-free genomic distance. Algorithms for molecular biology : AMB. 16, : 4 (2021).
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [21]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2959611
    Rubert, D., Doerr, D., Dias Vieira Braga, M.: The potential of family-free rearrangements towards gene orthology inference. Journal of Bioinformatics and Computational Biology. 19, : 2140014 (2021).
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [20]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942686
    Willing, E., Stoye, J., Dias Vieira Braga, M.: Computing the Inversion-Indel Distance. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 18, 2314-2326 (2021).
    PUB | DOI | WoS | PubMed | Europe PMC | arXiv
     
  • [19]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946303
    Bohnenkämper, L., Dias Vieira Braga, M., Dörr, D., Stoye, J.: Computing the rearrangement distance of natural genomes. Journal of Computational Biology. 28, 410-431 (2021).
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [18]
    2020 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2965072 OA
    Rubert, D., Martinez, F.V., Dias Vieira Braga, M.: Natural Family-Free Genomic Distance. In: Kingsford, C. and Pisanti, N. (eds.) 20th International Workshop on Algorithms in Bioinformatics (WABI 2020). Leibniz International Proceedings in Informatics (LIPIcs). 172, p. 3:1-3:23. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, Dagstuhl, Germany (2020).
    PUB | PDF | DOI | Download (ext.)
     
  • [17]
    2020 | Preprint | Veröffentlicht | PUB-ID: 2939861
    Bohnenkämper, L., Dias Vieira Braga, M., Dörr, D., Stoye, J.: Computing the rearrangement distance of natural genomes. arXiv:2001.02139. (2020).
    PUB | Download (ext.) | arXiv
     
  • [16]
    2020 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2939729
    Bohnenkämper, L., Dias Vieira Braga, M., Dörr, D., Stoye, J.: Computing the rearrangement distance of natural genomes. Proceedings of RECOMB 2020. LNBI. 12074, p. 3-18. (2020).
    PUB | DOI
     
  • [15]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919006 OA
    Rubert, D., Hoshino, E.A., Dias Vieira Braga, M., Stoye, J., Martinez, F.H.V.: Computing the family-free DCJ similarity. BMC Bioinformatics. 19, : 152 (2018).
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  • [14]
    2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2913015
    Rubert, D., Medeiros, G.L., Hoshino, E.A., Dias Vieira Braga, M., Stoye, J., Martinez, F.H.V.: Algorithms for Computing the Family-Free Genomic Similarity under DCJ. In: Meidanis, J. and Nakhleh, L. (eds.) Comparative Genomics. RECOMB-CG 2017. Lecture Notes in Bioinformatics. 10562, p. 76-100. Springer Verlag, Cham (2017).
    PUB | DOI
     
  • [13]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909057 OA
    Rubert, D., Feijão, P., Dias Vieira Braga, M., Stoye, J., Martinez, F.H.V.: Approximating the DCJ distance of balanced genomes in linear time. Algorithms for Molecular Biology. 12, : 3 (2017).
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [12]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916552
    da Silva, P.H., Machado, R., Dantas, S., Dias Vieira Braga, M.: Genomic Distance with High Indel Costs. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 14, 728-732 (2017).
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [11]
    2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2903708
    Rubert, D., Feijão, P., Dias Vieira Braga, M., Stoye, J., Martinez, F.H.V.: A Linear Time Approximation Algorithm for the DCJ Distance for Genomes with Bounded Number of Duplicates. In: Frith, M. and Storm Pedersen, C.N. (eds.) Algorithms in Bioinformatics. WABI 2016. Lecture Notes in Bioinformatics. 9838, p. 293-306. Springer, Cham (2016).
    PUB | DOI
     
  • [10]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2726366 OA
    Viduani Martinez, F.H., Feijão, P., Dias Vieira Braga, M., Stoye, J.: On the family-free DCJ distance and similarity. Algorithms for Molecular Biology. 10, : 13 (2015).
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  • [9]
    2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2677844
    Dias Vieira Braga, M., Stoye, J.: Sorting linear genomes with rearrangements and indels. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 12, 500-506 (2015).
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [8]
    2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2611648
    Dias Vieira Braga, M., Chauve, C., Dörr, D., Jahn, K., Stoye, J., Thévenin, A., Wittler, R.: The Potential of Family-Free Genome Comparison. In: Chauve, C., El-Mabrouk, N., and Tannier, E. (eds.) Models and Algorithms for Genome Evolution. Computational Biology Series. 19, p. 287-307. Springer Verlag, London (2013).
    PUB | DOI
     
  • [7]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2091794
    Dias Vieira Braga, M., Willing, E., Stoye, J.: Double Cut and Join with Insertions and Deletions. Journal of Computational Biology. 18, 1167-1184 (2011).
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [6]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2091790
    Kovac, J., Warren, R., Dias Vieira Braga, M., Stoye, J.: Restricted DCJ Model. Rearrangement Problems with Chromosome Reincorporation. Journal of Computational Biology. 18, 1231-1241 (2011).
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [5]
    2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919216
    Kovac, J., Dias Vieira Braga, M., Stoye, J.: The Problem of Chromosome Reincorporation in DCJ Sorting and Halving. Proc. of Recomb-CG 2010. LNBI. 6398, p. 13-24. (2010).
    PUB | DOI
     
  • [4]
    2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1898025
    Dias Vieira Braga, M., Stoye, J.: The Solution Space of Sorting by DCJ. Journal of Computational Biology. 17, 1145-1165 (2010).
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [3]
    2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919215
    Dias Vieira Braga, M., Willing, E., Stoye, J.: Genomic Distance with DCJ and Indels. Proc. of WABI 2010. LNBI. 6293, p. 90-101. (2010).
    PUB | DOI
     
  • [2]
    2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919206
    Dias Vieira Braga, M., Stoye, J.: Counting All DCJ Sorting Scenarios. Proc. of Recomb-CG 2009. LNBI. 5817, p. 36-47. (2009).
    PUB | DOI
     
  • [1]
    2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588760 OA
    Dias Vieira Braga, M., Gautier, C., Sagot, M.-F.: An asymmetric approach to preserve common intervals while sorting by reversals. Algorithms for Molecular Biology. 4, 16 (2009).
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
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