Genomic Distance with High Indel Costs

da Silva PH, Machado R, Dantas S, Dias Vieira Braga M (2017)
IEEE/ACM Transactions on Computational Biology and Bioinformatics 14(3): 728-732.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
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DOI
Autor*in
da Silva, Poly H.; Machado, Raphael; Dantas, Simone; Dias Vieira Braga, MaríliaUniBi
Einrichtung
Technische Fakultät > AG Genominformatik
Centrum für Biotechnologie > Arbeitsgruppe J. Stoye
Abstract / Bemerkung
We determine complexity of computing the DCJ-indel distance, when DCJ and indel operations have distinct constant costs, by showing an exact formula that can be computed in linear time for any choice of (constant) costs for DCJ and indel operations. We additionally consider the problem of triangular inequality disruption and propose an algorithmically efficient correction on each member of the family of DCJ-indel.
Stichworte
Genome rearrangements; combinatorics; algorithms
Erscheinungsjahr
2017
Zeitschriftentitel
IEEE/ACM Transactions on Computational Biology and Bioinformatics
Band
14
Ausgabe
3
Seite(n)
728-732
ISSN
1545-5963
eISSN
1557-9964
Page URI
https://pub.uni-bielefeld.de/record/2916552

Zitieren

da Silva PH, Machado R, Dantas S, Dias Vieira Braga M. Genomic Distance with High Indel Costs. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2017;14(3):728-732.
da Silva, P. H., Machado, R., Dantas, S., & Dias Vieira Braga, M. (2017). Genomic Distance with High Indel Costs. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 14(3), 728-732. doi:10.1109/TCBB.2016.2555301
da Silva, Poly H., Machado, Raphael, Dantas, Simone, and Dias Vieira Braga, Marília. 2017. “Genomic Distance with High Indel Costs”. IEEE/ACM Transactions on Computational Biology and Bioinformatics 14 (3): 728-732.
da Silva, P. H., Machado, R., Dantas, S., and Dias Vieira Braga, M. (2017). Genomic Distance with High Indel Costs. IEEE/ACM Transactions on Computational Biology and Bioinformatics 14, 728-732.
da Silva, P.H., et al., 2017. Genomic Distance with High Indel Costs. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 14(3), p 728-732.
P.H. da Silva, et al., “Genomic Distance with High Indel Costs”, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 14, 2017, pp. 728-732.
da Silva, P.H., Machado, R., Dantas, S., Dias Vieira Braga, M.: Genomic Distance with High Indel Costs. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 14, 728-732 (2017).
da Silva, Poly H., Machado, Raphael, Dantas, Simone, and Dias Vieira Braga, Marília. “Genomic Distance with High Indel Costs”. IEEE/ACM Transactions on Computational Biology and Bioinformatics 14.3 (2017): 728-732.

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Daten bereitgestellt von Europe PubMed Central.

12 References

Daten bereitgestellt von Europe PubMed Central.

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PMID: 26357261
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AUTHOR UNKNOWN, 0
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PMID: 23879938
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PMID: 21899423
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PMID: 19803734
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el-mabrouk, Journal of Discrete Algorithms 1(), 2001

AUTHOR UNKNOWN, 0
On the weight of indels in genomic distances.
Braga MD, Machado R, Ribeiro LC, Stoye J., BMC Bioinformatics 12 Suppl 9(), 2011
PMID: 22151784

AUTHOR UNKNOWN, 0

AUTHOR UNKNOWN, 0
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