27 Publikationen
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2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2985702Investigating the complexity of the double distance problemsPUB | DOI | WoS | PubMed | Europe PMC
Dias Vieira Braga, Marília, Investigating the complexity of the double distance problems. Algorithms for Molecular Biology 19 (). , 2024 -
2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2983338Efficient gene orthology inference via large-scale rearrangementsPUB | PDF | DOI | WoS | PubMed | Europe PMC
Rubert, Diego, Efficient gene orthology inference via large-scale rearrangements. Algorithms for Molecular Biology 18 (1). , 2023 -
2023 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2981606On the Class of Double Distance ProblemsPUB | DOI
Dias Vieira Braga, Marília, On the Class of Double Distance Problems. Comparative Genomics. 20th International Conference, RECOMB-CG 2023, Istanbul, Turkey, April 14–15, 2023, Proceedings 13883 (). Cham, 2023 -
2022 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2968237Gene Orthology Inference via Large-Scale Rearrangements for Partially Assembled GenomesPUB | PDF | DOI | Download (ext.)
Rubert, Diego, Gene Orthology Inference via Large-Scale Rearrangements for Partially Assembled Genomes. 22nd International Workshop on Algorithms in Bioinformatics (WABI 2022) 242 (). Dagstuhl, 2022 -
2022 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2965398A Linear Time Algorithm for an Extended Version of the Breakpoint Double DistancePUB | DOI
Dias Vieira Braga, Marília, A Linear Time Algorithm for an Extended Version of the Breakpoint Double Distance. 22nd International Workshop on Algorithms in Bioinformatics (WABI 2022) 242 (). Dagstuhl, 2022 -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2954832Natural family-free genomic distance.PUB | PDF | DOI | WoS | PubMed | Europe PMC
Rubert, Diego, Natural family-free genomic distance.. Algorithms for molecular biology : AMB 16 (1). , 2021 -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2959611The potential of family-free rearrangements towards gene orthology inferencePUB | DOI | WoS | PubMed | Europe PMC
Rubert, Diego, The potential of family-free rearrangements towards gene orthology inference. Journal of Bioinformatics and Computational Biology 19 (6). , 2021 -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942686Computing the Inversion-Indel DistancePUB | DOI | WoS | PubMed | Europe PMC | arXiv
Willing, Eyla, Computing the Inversion-Indel Distance. IEEE/ACM Transactions on Computational Biology and Bioinformatics 18 (6). , 2021 -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946303Computing the rearrangement distance of natural genomesPUB | DOI | WoS | PubMed | Europe PMC
Bohnenkämper, Leonard, Computing the rearrangement distance of natural genomes. Journal of Computational Biology 28 (4). , 2021 -
2020 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2965072Natural Family-Free Genomic DistancePUB | PDF | DOI | Download (ext.)
Rubert, Diego, Natural Family-Free Genomic Distance. 20th International Workshop on Algorithms in Bioinformatics (WABI 2020) 172 (). Dagstuhl, Germany, 2020 -
2020 | Preprint | Veröffentlicht | PUB-ID: 2939861Computing the rearrangement distance of natural genomesPUB | Download (ext.) | arXiv
Bohnenkämper, Leonard, Computing the rearrangement distance of natural genomes. arXiv:2001.02139 (). , 2020 -
2020 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2939729Computing the rearrangement distance of natural genomesPUB | DOI
Bohnenkämper, Leonard, Computing the rearrangement distance of natural genomes. Proceedings of RECOMB 2020 12074 (). , 2020 -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919006Computing the family-free DCJ similarityPUB | PDF | DOI | WoS | PubMed | Europe PMC
Rubert, Diego, Computing the family-free DCJ similarity. BMC Bioinformatics 19 (Suppl. 6). , 2018 -
2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2913015Algorithms for Computing the Family-Free Genomic Similarity under DCJPUB | DOI
Rubert, Diego, Algorithms for Computing the Family-Free Genomic Similarity under DCJ. Comparative Genomics. RECOMB-CG 2017 10562 (). Cham, 2017 -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909057Approximating the DCJ distance of balanced genomes in linear timePUB | PDF | DOI | WoS | PubMed | Europe PMC
Rubert, Diego, Approximating the DCJ distance of balanced genomes in linear time. Algorithms for Molecular Biology 12 (1). , 2017 -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916552Genomic Distance with High Indel CostsPUB | DOI | WoS | PubMed | Europe PMC
da Silva, Poly H., Genomic Distance with High Indel Costs. IEEE/ACM Transactions on Computational Biology and Bioinformatics 14 (3). , 2017 -
2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2903708A Linear Time Approximation Algorithm for the DCJ Distance for Genomes with Bounded Number of DuplicatesPUB | DOI
Rubert, Diego, A Linear Time Approximation Algorithm for the DCJ Distance for Genomes with Bounded Number of Duplicates. Algorithms in Bioinformatics. WABI 2016 9838 (). Cham, 2016 -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2726366On the family-free DCJ distance and similarityPUB | PDF | DOI | WoS | PubMed | Europe PMC
Viduani Martinez, Fábio Henrique, On the family-free DCJ distance and similarity. Algorithms for Molecular Biology 10 (1). , 2015 -
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2677844Sorting linear genomes with rearrangements and indelsPUB | DOI | WoS | PubMed | Europe PMC
Dias Vieira Braga, Marília, Sorting linear genomes with rearrangements and indels. IEEE/ACM Transactions on Computational Biology and Bioinformatics 12 (3). , 2015 -
2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2611648The Potential of Family-Free Genome ComparisonPUB | DOI
Dias Vieira Braga, Marília, The Potential of Family-Free Genome Comparison. Models and Algorithms for Genome Evolution 19 (). London, 2013 -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2091794Double Cut and Join with Insertions and DeletionsPUB | DOI | WoS | PubMed | Europe PMC
Dias Vieira Braga, Marília, Double Cut and Join with Insertions and Deletions. Journal of Computational Biology 18 (9). , 2011 -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2091790Restricted DCJ Model. Rearrangement Problems with Chromosome ReincorporationPUB | DOI | WoS | PubMed | Europe PMC
Kovac, Jakub, Restricted DCJ Model. Rearrangement Problems with Chromosome Reincorporation. Journal of Computational Biology 18 (9). , 2011 -
2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919216The Problem of Chromosome Reincorporation in DCJ Sorting and HalvingPUB | DOI
Kovac, Jakub, The Problem of Chromosome Reincorporation in DCJ Sorting and Halving. Proc. of Recomb-CG 2010 6398 (). , 2010 -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1898025The Solution Space of Sorting by DCJPUB | DOI | WoS | PubMed | Europe PMC
Dias Vieira Braga, Marília, The Solution Space of Sorting by DCJ. Journal of Computational Biology 17 (9). , 2010 -
2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919215Genomic Distance with DCJ and IndelsPUB | DOI
Dias Vieira Braga, Marília, Genomic Distance with DCJ and Indels. Proc. of WABI 2010 6293 (). , 2010 -
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919206Counting All DCJ Sorting ScenariosPUB | DOI
Dias Vieira Braga, Marília, Counting All DCJ Sorting Scenarios. Proc. of Recomb-CG 2009 5817 (). , 2009 -
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588760An asymmetric approach to preserve common intervals while sorting by reversalsPUB | PDF | DOI | WoS | PubMed | Europe PMC
Dias Vieira Braga, Marília, An asymmetric approach to preserve common intervals while sorting by reversals. Algorithms for Molecular Biology 4 (1). , 2009