PUB - Publikationen an der Universität Bielefeld

Alle markieren

• [27]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914424

  Integration and virtual reality exploration of biomedical data with CmPI and VANTED
  Sommer B, Schreiber F (2017)
  IT-INFORMATION TECHNOLOGY 59(4): 181-190.

  PUB | DOI | WoS
   
• [26]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901345

  From single variants to protein cascades multiscale modeling of single nucleotide variant sets in genetic disorders
  Mueller SC, Sommer B, Backes C, Haas J, Meder B, Meese E, Keller A (2016)
  Journal of Biological Chemistry 291(4): 1582-1590.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [25]
  

  2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704602

  Towards a 3D Cell Model of Chlamydomonas reinhardtii (Workshop Abstract)
  Biere N, Doebbe A, Rothe N, Huser T, Kruse O, Sommer B (2014)
  In: Proceedings of the CELLmicrocosmos neXt workshop. Sommer B (Ed); Bielefeld: Bielefeld University: 9-10.

  PUB | PDF | DOI
   
• [24]
  

  2014 | Konferenzband | Veröffentlicht | PUB-ID: 2704570

  Proceedings of CELLmicrocosmos neXt 2014
  Sommer B (Ed) (2014)
  Bielefeld: Bielefeld University.

  PUB | PDF | DOI
   
• [23]
  

  2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704619

  Towards Pathway Prediction and Subcellular Localization by using FraMeTex (Workshop Abstract)
  Wallmeyer T, Sommer B, Kormeier B (2014)
  In: Proceedings of the CELLmicrocosmos neXt workshop. Sommer B (Ed); Bielefeld: Bielefeld University: 18-19.

  PUB | PDF | DOI
   
• [22]
  

  2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704665

  Towards a Web-based Visualization for the CELLmicrocosmos 4 PathwayIntegration (Workshop Abstract)
  Kovanci G, Sommer B (2014)
  In: Proceedings of the CELLmicrocosmos neXt workshop. Sommer B (Ed); Bielefeld: Bielefeld University: 14-15.

  PUB | PDF | DOI
   
• [21]
  

  2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704586

  Evaluation and Visualization of Pathway Efficiency based on Subcellular Protein Localizations (Workshop Abstract)
  Popik OV, Sommer B, Hofestädt R, Ivanisenko VA (2014)
  In: Proceedings of the CELLmicrocosmos neXt workshop. Sommer B (Ed); Bielefeld: Bielefeld University: 9-10.

  PUB | PDF | DOI
   
• [20]
  

  2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704580

  CELLmicrocosmos X (Workshop Abstract)
  Sommer B (2014)
  In: Proceedings of the CELLmicrocosmos neXt workshop. Sommer B (Ed); Bielefeld: Bielefeld University: 5-6.

  PUB | PDF | DOI
   
• [19]
  

  2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704564

  A novel Lecture Program in Bioinformatics: Interdisciplinary Cell Visualization and Modeling (Workshop Abstract)
  Sommer B, Chen M (2014)
  In: Proceedings of the CELLmicrocosmos neXt workshop. Sommer B (Ed); Bielefeld: 20-21.

  PUB | PDF | DOI
   
• [18]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2710884

  Analysis of signaling networks distributed over intracellular compartments based on protein-protein interactions
  Popik OV, Saik OV, Petrovskiy ED, Sommer B, Hofestädt R, Lavrik IN, Ivanisenko VA (2014)
  BMC Genomics 15(Suppl 12): S7.

  PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
   
• [17]
  

  2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2664859

  Membrane simulation analysis using Voronoi tessellation (Conference Abstract)
  Lukat G, Sommer B, Krüger J (2014)
  In: Journal of Cheminformatics. Journal of Cheminformatics, 6(Suppl 1). Springer Science and Business Media LLC.

  PUB | DOI
   
• [16]
  

  2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2693254

  Membrane Mapping: Combining Mesoscopic and Molecular Cell Visualization
  Waltemate T, Sommer B, Botsch M (2014)
  In: Proceedings of Eurographics Workshop on Visual Computing for Biology and Medicine. Eurographics Association: 89-96.

  PUB | DOI
   
• [15]
  

  2014 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2664837

  Network Analysis and Integration in a Virtual Cell Environment
  Sommer B (2014)
  In: Approaches in Integrative Bioinformatics. Chen M, Hofestädt R (Eds); Berlin, Heidelberg: Springer Berlin Heidelberg: 275-297.

  PUB | DOI
   
• [14]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2661812

  Stereoscopic cell visualization: from mesoscopic to molecular scale
  Sommer B, Bender C, Hoppe T, Gamroth C, Jelonek L (2014)
  Journal of Electronic Imaging 23(1): 11007.

  PUB | DOI | WoS
   
• [13]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560817

  Subcellular localization charts: a new visual methodology for the semi-automatic localization of protein-related data sets
  Sommer B, Kormeier B, Demenkov PS, Arrigo P, Hippe K, Ates Ö, Kochetov AV, Ivanisenko VA, Kolchanov NA, Hofestädt R (2013)
  Journal of Bioinformatics and Computational Biology 11(01): 1340005.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [12]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645319

  APL@Voro: A Voronoi-Based Membrane Analysis Tool for GROMACS Trajectories
  Lukat G, Krueger J, Sommer B (2013)
  Journal Of Chemical Information And Modeling 53(11): 2908-2925.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [11]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2576375

  Membrane Packing Problems: A short Review on computational Membrane Modeling Methods and Tools
  Sommer B (2013)
  Computational and Structural Biotechnology Journal 5(6): e201302014.

  PUB | DOI | PubMed | Europe PMC
   
• [10]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901699

  Editorial: JIBtools - a Strategy to Reduce the Bioinformatics Analysis Gap
  Hofestädt R, Kormeier B, Lange M, Schreiber F, Sommer B, Weise S (2013)
  Journal of Integrative Bioinformatics 10(1): 226.

  PUB
   
• [9]
  

  2012 | Bielefelder E-Dissertation | PUB-ID: 2557380

  CELLmicrocosmos - Integrative cell modeling at the  molecular, mesoscopic and functional level
  Sommer B (2012)
  Bielefeld: Bielefeld University.

  PUB | PDF
   
• [8]
  

  2012 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2467408

  Grid Workflow Approach using the CELLmicrocosmos 2.2 MembraneEditor and UNICORE to commit and monitor GROMACS Jobs
  Rubert S, Gamroth C, Krüger J, Sommer B (2012)
  In: CEUR Workshop Proceedings. Warzecha K-D, Packschies L (Eds); , 826. CEUR-WS.

  PUB | Download (ext.)
   
• [7]
  

  2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2375173

  Coarse-grained and all-atom MD simulations with Gromacs based on CELLmicrocosmos 2.2 model membranes (Conference Abstract)
  Sommer B, Dingersen T, Gamroth C, Heissmann AJ, Lukat G, Rotzoll R, Rubert S, Schäfer A, Krüger J (2011)
  In: Journal of Cheminformatics. Journal of Cheminformatics, 3(Suppl 1). Springer Science and Business Media LLC.

  PUB | DOI
   
• [6]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289773

  CELLmicrocosmos 2.2 Membrane Editor: A Modular Interactive Shape-Based Software Approach To Solve Heterogeneous Membrane Packing Problems
  Sommer B, Dingersen T, Gamroth C, Schneider SE, Robert S, Krueger J, Dietz K-J (2011)
  Journal of Chemical Information and Modeling 51(5): 1165-1182.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [5]
  

  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2374757

  Visualization and Analysis of a Cardio Vascular Disease-and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches
  Sommer B, Tiys ES, Kormeier B, Hippe K, Janowski SJ, Ivanisenko TV, Bragin AO, Arrigo P, Demenkov PS, Kochetov AV, Ivanisenko VA, et al. (2010)
  Journal of Integrative Bioinformatics 7(1): 148.

  PUB | DOI | PubMed | Europe PMC
   
• [4]
  

  2010 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1785479

  CELLmicrocosmos 2.2: advancements and applications in modeling of three-dimensional PDB membranes (Conference Abstract)
  Sommer B, Dingersen T, Schneider S, Rubert S, Gamroth C (2010)
  In: Journal of Cheminformatics. Journal of Cheminformatics, 2(Suppl 1):O21(S1). Springer Science and Business Media LLC.

  PUB | PDF | DOI
   
• [3]
  

  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929144

  Membranen für alle
  Sommer B (2010)
  NACHRICHTEN AUS DER CHEMIE 58(10): 1030-1032.

  PUB | DOI | WoS
   
• [2]
  

  2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2002601

  CELLMICROCOSMOS 4.1, An Interactive Approach to Integrating Spatially Localized Metabolic Networks into a Virtual 3D Cell Environment.
  Sommer B, Künsemöller J, Sand N, Husemann A, Rumming M, Kormeier B (2010)
  Presented at the BIOINFORMATICS 2010, Valencia, Spain.

  PUB
   
• [1]
  

  2009 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1785172

  CELLmicrocosmos 2.1: a software approach for the modelling of three-dimensional PDB membranes (Conference Abstract)
  Sommer B, Dingersen T, Schneider S (2009)
  In: Chemistry Central Journal. Chemistry Central Journal, 3(Suppl 1):P72(S1). Springer Science and Business Media LLC.

  PUB | PDF | DOI