29 Publications

Mark all

[29]
2017 | Journal Article | PUB-ID: 2914424
Integration and virtual reality exploration of biomedical data with CmPI and VANTED
Sommer B, Schreiber F (2017)
IT-INFORMATION TECHNOLOGY 59(4): 181-190.
PUB | DOI | WoS
 
[28]
2016 | Journal Article | PUB-ID: 2901345
From single variants to protein cascades multiscale modeling of single nucleotide variant sets in genetic disorders
Mueller SC, Sommer B, Backes C, Haas J, Meder B, Meese E, Keller A (2016)
Journal of Biological Chemistry 291(4): 1582-1590.
PUB | DOI | WoS | PubMed | Europe PMC
 
[27]
2014 | Journal Article | PUB-ID: 2661812
Stereoscopic cell visualization: from mesoscopic to molecular scale
Sommer B, Bender C, Hoppe T, Gamroth C, Jelonek L (2014)
Journal of Electronic Imaging 23(1): 011007.
PUB | DOI | WoS
 
[26]
2014 | Conference Abstract | PUB-ID: 2704602
Towards a 3D Cell Model of Chlamydomonas reinhardtii (Workshop Abstract)
Biere N, Doebbe A, Rothe N, Huser T, Kruse O, Sommer B (2014)
In: Proceedings of the CELLmicrocosmos neXt workshop. Sommer B (Ed); Bielefeld: Bielefeld University: 9-10.
PUB | PDF | DOI
 
[25]
2014 | Conference Abstract | PUB-ID: 2664859
Membrane simulation analysis using Voronoi tessellation (Conference Abstract)
Lukat G, Sommer B, Krüger J (2014)
Journal of Cheminformatics 6(Suppl 1): O23.
PUB | DOI
 
[24]
2014 | Conference Abstract | PUB-ID: 2704586
Evaluation and Visualization of Pathway Efficiency based on Subcellular Protein Localizations (Workshop Abstract)
Popik OV, Sommer B, Hofestädt R, Ivanisenko VA (2014)
In: Proceedings of the CELLmicrocosmos neXt workshop. Sommer B (Ed); Bielefeld: Bielefeld University: 9-10.
PUB | PDF | DOI
 
[23]
2014 | Journal Article | PUB-ID: 2901698
Analysis of signalling networks distributed over intracellular compartments based on protein-protein interactions.
Popik OV, Saik OV, Petrovskiy ED, Sommer B, Hofestädt R, Lavrik IN, Ivanisenko VA (2014)
BMC Genomics 15(12): S7.
PUB | DOI | WoS | PubMed | Europe PMC
 
[22]
2014 | Conference Abstract | PUB-ID: 2704564
A novel Lecture Program in Bioinformatics: Interdisciplinary Cell Visualization and Modeling (Workshop Abstract)
Sommer B, Chen M (2014)
In: Proceedings of the CELLmicrocosmos neXt workshop. Sommer B (Ed); Bielefeld: 20-21.
PUB | PDF | DOI
 
[21]
2014 | Journal Article | PUB-ID: 2710884
Analysis of signaling networks distributed over intracellular compartments based on protein-protein interactions
Popik OV, Saik OV, Petrovskiy ED, Sommer B, Hofestädt R, Lavrik IN, Ivanisenko VA (2014)
BMC Genomics 15(Suppl 12): S7.
PUB | DOI | WoS | PubMed | Europe PMC
 
[20]
2014 | Conference Abstract | PUB-ID: 2704665
Towards a Web-based Visualization for the CELLmicrocosmos 4 PathwayIntegration (Workshop Abstract)
Kovanci G, Sommer B (2014)
In: Proceedings of the CELLmicrocosmos neXt workshop. Sommer B (Ed); Bielefeld: Bielefeld University: 14-15.
PUB | PDF
 
[19]
2014 | Conference (Editor) | PUB-ID: 2704570
Proceedings of CELLmicrocosmos neXt 2014
Sommer B (Ed) (2014)
Bielefeld: Bielefeld University.
PUB | PDF | DOI
 
[18]
2014 | Conference Abstract | PUB-ID: 2704619
Towards Pathway Prediction and Subcellular Localization by using FraMeTex (Workshop Abstract)
Wallmeyer T, Sommer B, Kormeier B (2014)
In: Proceedings of the CELLmicrocosmos neXt workshop. Sommer B (Ed); Bielefeld: Bielefeld University: 18-19.
PUB | PDF | DOI
 
[17]
2014 | Conference Abstract | PUB-ID: 2704580
CELLmicrocosmos X (Workshop Abstract)
Sommer B (2014)
In: Proceedings of the CELLmicrocosmos neXt workshop. Sommer B (Ed); Bielefeld: Bielefeld University: 5-6.
PUB | PDF | DOI
 
[16]
2014 | Conference Paper | PUB-ID: 2693254
Membrane Mapping: Combining Mesoscopic and Molecular Cell Visualization
Waltemate T, Sommer B, Botsch M (2014)
In: Proceedings of Eurographics Workshop on Visual Computing for Biology and Medicine. Eurographics Association: 89-96.
PUB | DOI
 
[15]
2014 | Book Chapter | PUB-ID: 2664837
Network Analysis and Integration in a Virtual Cell Environment
Sommer B (2014)
In: Approaches in Integrative Bioinformatics. Chen M, Hofestädt R (Eds); 275-297.
PUB | DOI
 
[14]
2013 | Journal Article | PUB-ID: 2901699
Editorial: JIBtools - a Strategy to Reduce the Bioinformatics Analysis Gap.
Hofestädt R, Kormeier B, Lange M, Schreiber F, Sommer B, Weise S (2013)
Journal of Integrative Bioinformatics 10(1): 226.
PUB
 
[13]
2013 | Journal Article | PUB-ID: 2901703
Subcellular Localization Charts: a new visual Methodology for the semi-automatic Localization of protein-related Data Sets.
Sommer B, Hippe K, Demenkov PS, Arrigo P, Kormeier B, Ates Ö, Kochetov AV, Ivanisenko VA, Kolchanov NA, Hofestädt R (2013)
Journal of Bioinformatics and Computational Biology 11(1): 1340005.
PUB | DOI
 
[12]
2013 | Journal Article | PUB-ID: 2645319
APL@Voro: A Voronoi-Based Membrane Analysis Tool for GROMACS Trajectories
Lukat G, Krueger J, Sommer B (2013)
Journal Of Chemical Information And Modeling 53(11): 2908-2925.
PUB | DOI | WoS | PubMed | Europe PMC
 
[11]
2013 | Journal Article | PUB-ID: 2560817
Subcellular localization charts: a new visual methodology for the semi-automatic localization of protein-related data sets
Sommer B, Kormeier B, Demenkov PS, Arrigo P, Hippe K, Ates Ö, Kochetov AV, Ivanisenko VA, Kolchanov NA, Hofestädt R (2013)
Journal of Bioinformatics and Computational Biology 11(01): 1340005.
PUB | DOI | WoS | PubMed | Europe PMC
 
[10]
2013 | Journal Article | PUB-ID: 2576375
Membrane Packing Problems: A short Review on computational Membrane Modeling Methods and Tools
Sommer B (2013)
Computational and Structural Biotechnology Journal 5(6): e201302014.
PUB | DOI | PubMed | Europe PMC
 
[9]
2012 | Bielefeld Dissertation | PUB-ID: 2557380 PUB | PDF
 
[8]
2012 | Conference Paper | PUB-ID: 2467408
Grid Workflow Approach using the CELLmicrocosmos 2.2 MembraneEditor and UNICORE to commit and monitor GROMACS Jobs
Rubert S, Gamroth C, Krüger J, Sommer B (2012)
In: CEUR Workshop Proceedings. Warzecha K-D, Packschies L (Eds); , 826. CEUR-WS.
PUB
 
[7]
2011 | Conference Abstract | PUB-ID: 2375173
Coarse-grained and all-atom MD simulations with Gromacs based on CELLmicrocosmos 2.2 model membranes (Conference Abstract)
Sommer B, Dingersen T, Gamroth C, Heissmann AJ, Lukat G, Rotzoll R, Rubert S, Schäfer A, Krüger J (2011)
Journal of Cheminformatics 3(Suppl 1): P43.
PUB | DOI
 
[6]
2011 | Journal Article | PUB-ID: 2289773
CELLmicrocosmos 2.2 Membrane Editor: A Modular Interactive Shape-Based Software Approach To Solve Heterogeneous Membrane Packing Problems
Sommer B, Dingersen T, Gamroth C, Schneider SE, Robert S, Krueger J, Dietz K-J (2011)
Journal of Chemical Information and Modeling 51(5): 1165-1182.
PUB | DOI | WoS | PubMed | Europe PMC
 
[5]
2010 | Conference Paper | PUB-ID: 2002601
CELLMICROCOSMOS 4.1, An Interactive Approach to Integrating Spatially Localized Metabolic Networks into a Virtual 3D Cell Environment.
Sommer B, Künsemöller J, Sand N, Husemann A, Rumming M, Kormeier B (2010)
Presented at the BIOINFORMATICS 2010, Valencia, Spain.
PUB
 
[4]
2010 | Journal Article | PUB-ID: 2374757
Visualization and Analysis of a Cardio Vascular Disease-and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches
Sommer B, Tiys ES, Kormeier B, Hippe K, Janowski SJ, Ivanisenko TV, Bragin AO, Arrigo P, Demenkov PS, Kochetov AV, Ivanisenko VA, et al. (2010)
Journal of Integrative Bioinformatics 7(1): 148.
PUB | DOI | PubMed | Europe PMC
 
[3]
2010 | Conference Abstract | PUB-ID: 1785479
CELLmicrocosmos 2.2: advancements and applications in modeling of three-dimensional PDB membranes (Conference Abstract)
Sommer B, Dingersen T, Schneider S, Rubert S, Gamroth C (2010)
Journal of Cheminformatics 2(Suppl 1):O21.
PUB | PDF | DOI
 
[2]
2010 | Journal Article | PUB-ID: 1929144
Membranen für alle
Sommer B (2010)
NACHRICHTEN AUS DER CHEMIE 58(10): 1030-1032.
PUB | DOI | WoS
 
[1]
2009 | Conference Abstract | PUB-ID: 1785172
CELLmicrocosmos 2.1: a software approach for the modelling of three-dimensional PDB membranes (Conference Abstract)
Sommer B, Dingersen T, Schneider S (2009)
Chemistry Central Journal 3(Suppl 1):P72.
PUB | PDF | DOI
 

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29 Data Publications

Mark all

[29]
2017 | Journal Article | PUB-ID: 2914424
Integration and virtual reality exploration of biomedical data with CmPI and VANTED
Sommer B, Schreiber F (2017)
IT-INFORMATION TECHNOLOGY 59(4): 181-190.
PUB | DOI | WoS
 
[28]
2016 | Journal Article | PUB-ID: 2901345
From single variants to protein cascades multiscale modeling of single nucleotide variant sets in genetic disorders
Mueller SC, Sommer B, Backes C, Haas J, Meder B, Meese E, Keller A (2016)
Journal of Biological Chemistry 291(4): 1582-1590.
PUB | DOI | WoS | PubMed | Europe PMC
 
[27]
2014 | Journal Article | PUB-ID: 2661812
Stereoscopic cell visualization: from mesoscopic to molecular scale
Sommer B, Bender C, Hoppe T, Gamroth C, Jelonek L (2014)
Journal of Electronic Imaging 23(1): 011007.
PUB | DOI | WoS
 
[26]
2014 | Conference Abstract | PUB-ID: 2704602
Towards a 3D Cell Model of Chlamydomonas reinhardtii (Workshop Abstract)
Biere N, Doebbe A, Rothe N, Huser T, Kruse O, Sommer B (2014)
In: Proceedings of the CELLmicrocosmos neXt workshop. Sommer B (Ed); Bielefeld: Bielefeld University: 9-10.
PUB | PDF | DOI
 
[25]
2014 | Conference Abstract | PUB-ID: 2664859
Membrane simulation analysis using Voronoi tessellation (Conference Abstract)
Lukat G, Sommer B, Krüger J (2014)
Journal of Cheminformatics 6(Suppl 1): O23.
PUB | DOI
 
[24]
2014 | Conference Abstract | PUB-ID: 2704586
Evaluation and Visualization of Pathway Efficiency based on Subcellular Protein Localizations (Workshop Abstract)
Popik OV, Sommer B, Hofestädt R, Ivanisenko VA (2014)
In: Proceedings of the CELLmicrocosmos neXt workshop. Sommer B (Ed); Bielefeld: Bielefeld University: 9-10.
PUB | PDF | DOI
 
[23]
2014 | Journal Article | PUB-ID: 2901698
Analysis of signalling networks distributed over intracellular compartments based on protein-protein interactions.
Popik OV, Saik OV, Petrovskiy ED, Sommer B, Hofestädt R, Lavrik IN, Ivanisenko VA (2014)
BMC Genomics 15(12): S7.
PUB | DOI | WoS | PubMed | Europe PMC
 
[22]
2014 | Conference Abstract | PUB-ID: 2704564
A novel Lecture Program in Bioinformatics: Interdisciplinary Cell Visualization and Modeling (Workshop Abstract)
Sommer B, Chen M (2014)
In: Proceedings of the CELLmicrocosmos neXt workshop. Sommer B (Ed); Bielefeld: 20-21.
PUB | PDF | DOI
 
[21]
2014 | Journal Article | PUB-ID: 2710884
Analysis of signaling networks distributed over intracellular compartments based on protein-protein interactions
Popik OV, Saik OV, Petrovskiy ED, Sommer B, Hofestädt R, Lavrik IN, Ivanisenko VA (2014)
BMC Genomics 15(Suppl 12): S7.
PUB | DOI | WoS | PubMed | Europe PMC
 
[20]
2014 | Conference Abstract | PUB-ID: 2704665
Towards a Web-based Visualization for the CELLmicrocosmos 4 PathwayIntegration (Workshop Abstract)
Kovanci G, Sommer B (2014)
In: Proceedings of the CELLmicrocosmos neXt workshop. Sommer B (Ed); Bielefeld: Bielefeld University: 14-15.
PUB | PDF
 
[19]
2014 | Conference (Editor) | PUB-ID: 2704570
Proceedings of CELLmicrocosmos neXt 2014
Sommer B (Ed) (2014)
Bielefeld: Bielefeld University.
PUB | PDF | DOI
 
[18]
2014 | Conference Abstract | PUB-ID: 2704619
Towards Pathway Prediction and Subcellular Localization by using FraMeTex (Workshop Abstract)
Wallmeyer T, Sommer B, Kormeier B (2014)
In: Proceedings of the CELLmicrocosmos neXt workshop. Sommer B (Ed); Bielefeld: Bielefeld University: 18-19.
PUB | PDF | DOI
 
[17]
2014 | Conference Abstract | PUB-ID: 2704580
CELLmicrocosmos X (Workshop Abstract)
Sommer B (2014)
In: Proceedings of the CELLmicrocosmos neXt workshop. Sommer B (Ed); Bielefeld: Bielefeld University: 5-6.
PUB | PDF | DOI
 
[16]
2014 | Conference Paper | PUB-ID: 2693254
Membrane Mapping: Combining Mesoscopic and Molecular Cell Visualization
Waltemate T, Sommer B, Botsch M (2014)
In: Proceedings of Eurographics Workshop on Visual Computing for Biology and Medicine. Eurographics Association: 89-96.
PUB | DOI
 
[15]
2014 | Book Chapter | PUB-ID: 2664837
Network Analysis and Integration in a Virtual Cell Environment
Sommer B (2014)
In: Approaches in Integrative Bioinformatics. Chen M, Hofestädt R (Eds); 275-297.
PUB | DOI
 
[14]
2013 | Journal Article | PUB-ID: 2901699
Editorial: JIBtools - a Strategy to Reduce the Bioinformatics Analysis Gap.
Hofestädt R, Kormeier B, Lange M, Schreiber F, Sommer B, Weise S (2013)
Journal of Integrative Bioinformatics 10(1): 226.
PUB
 
[13]
2013 | Journal Article | PUB-ID: 2901703
Subcellular Localization Charts: a new visual Methodology for the semi-automatic Localization of protein-related Data Sets.
Sommer B, Hippe K, Demenkov PS, Arrigo P, Kormeier B, Ates Ö, Kochetov AV, Ivanisenko VA, Kolchanov NA, Hofestädt R (2013)
Journal of Bioinformatics and Computational Biology 11(1): 1340005.
PUB | DOI
 
[12]
2013 | Journal Article | PUB-ID: 2645319
APL@Voro: A Voronoi-Based Membrane Analysis Tool for GROMACS Trajectories
Lukat G, Krueger J, Sommer B (2013)
Journal Of Chemical Information And Modeling 53(11): 2908-2925.
PUB | DOI | WoS | PubMed | Europe PMC
 
[11]
2013 | Journal Article | PUB-ID: 2560817
Subcellular localization charts: a new visual methodology for the semi-automatic localization of protein-related data sets
Sommer B, Kormeier B, Demenkov PS, Arrigo P, Hippe K, Ates Ö, Kochetov AV, Ivanisenko VA, Kolchanov NA, Hofestädt R (2013)
Journal of Bioinformatics and Computational Biology 11(01): 1340005.
PUB | DOI | WoS | PubMed | Europe PMC
 
[10]
2013 | Journal Article | PUB-ID: 2576375
Membrane Packing Problems: A short Review on computational Membrane Modeling Methods and Tools
Sommer B (2013)
Computational and Structural Biotechnology Journal 5(6): e201302014.
PUB | DOI | PubMed | Europe PMC
 
[9]
2012 | Bielefeld Dissertation | PUB-ID: 2557380 PUB | PDF
 
[8]
2012 | Conference Paper | PUB-ID: 2467408
Grid Workflow Approach using the CELLmicrocosmos 2.2 MembraneEditor and UNICORE to commit and monitor GROMACS Jobs
Rubert S, Gamroth C, Krüger J, Sommer B (2012)
In: CEUR Workshop Proceedings. Warzecha K-D, Packschies L (Eds); , 826. CEUR-WS.
PUB
 
[7]
2011 | Conference Abstract | PUB-ID: 2375173
Coarse-grained and all-atom MD simulations with Gromacs based on CELLmicrocosmos 2.2 model membranes (Conference Abstract)
Sommer B, Dingersen T, Gamroth C, Heissmann AJ, Lukat G, Rotzoll R, Rubert S, Schäfer A, Krüger J (2011)
Journal of Cheminformatics 3(Suppl 1): P43.
PUB | DOI
 
[6]
2011 | Journal Article | PUB-ID: 2289773
CELLmicrocosmos 2.2 Membrane Editor: A Modular Interactive Shape-Based Software Approach To Solve Heterogeneous Membrane Packing Problems
Sommer B, Dingersen T, Gamroth C, Schneider SE, Robert S, Krueger J, Dietz K-J (2011)
Journal of Chemical Information and Modeling 51(5): 1165-1182.
PUB | DOI | WoS | PubMed | Europe PMC
 
[5]
2010 | Conference Paper | PUB-ID: 2002601
CELLMICROCOSMOS 4.1, An Interactive Approach to Integrating Spatially Localized Metabolic Networks into a Virtual 3D Cell Environment.
Sommer B, Künsemöller J, Sand N, Husemann A, Rumming M, Kormeier B (2010)
Presented at the BIOINFORMATICS 2010, Valencia, Spain.
PUB
 
[4]
2010 | Journal Article | PUB-ID: 2374757
Visualization and Analysis of a Cardio Vascular Disease-and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches
Sommer B, Tiys ES, Kormeier B, Hippe K, Janowski SJ, Ivanisenko TV, Bragin AO, Arrigo P, Demenkov PS, Kochetov AV, Ivanisenko VA, et al. (2010)
Journal of Integrative Bioinformatics 7(1): 148.
PUB | DOI | PubMed | Europe PMC
 
[3]
2010 | Conference Abstract | PUB-ID: 1785479
CELLmicrocosmos 2.2: advancements and applications in modeling of three-dimensional PDB membranes (Conference Abstract)
Sommer B, Dingersen T, Schneider S, Rubert S, Gamroth C (2010)
Journal of Cheminformatics 2(Suppl 1):O21.
PUB | PDF | DOI
 
[2]
2010 | Journal Article | PUB-ID: 1929144
Membranen für alle
Sommer B (2010)
NACHRICHTEN AUS DER CHEMIE 58(10): 1030-1032.
PUB | DOI | WoS
 
[1]
2009 | Conference Abstract | PUB-ID: 1785172
CELLmicrocosmos 2.1: a software approach for the modelling of three-dimensional PDB membranes (Conference Abstract)
Sommer B, Dingersen T, Schneider S (2009)
Chemistry Central Journal 3(Suppl 1):P72.
PUB | PDF | DOI
 

Search

Filter Publications

Display / Sort

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