27 Publikationen
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901345S.C. Mueller, et al., “From single variants to protein cascades multiscale modeling of single nucleotide variant sets in genetic disorders”, Journal of Biological Chemistry, vol. 291, 2016, pp. 1582-1590.PUB | DOI | WoS | PubMed | Europe PMC
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2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704619T. Wallmeyer, B. Sommer, and B. Kormeier, “Towards Pathway Prediction and Subcellular Localization by using FraMeTex (Workshop Abstract)”, Proceedings of the CELLmicrocosmos neXt workshop, B. Sommer, ed., Bielefeld: Bielefeld University, 2014, pp.18-19.PUB | PDF | DOI
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2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704665G. Kovanci and B. Sommer, “Towards a Web-based Visualization for the CELLmicrocosmos 4 PathwayIntegration (Workshop Abstract)”, Proceedings of the CELLmicrocosmos neXt workshop, B. Sommer, ed., Bielefeld: Bielefeld University, 2014, pp.14-15.PUB | PDF | DOI
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2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704586O.V. Popik, et al., “Evaluation and Visualization of Pathway Efficiency based on Subcellular Protein Localizations (Workshop Abstract)”, Proceedings of the CELLmicrocosmos neXt workshop, B. Sommer, ed., Bielefeld: Bielefeld University, 2014, pp.9-10.PUB | PDF | DOI
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2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704564B. Sommer and M. Chen, “A novel Lecture Program in Bioinformatics: Interdisciplinary Cell Visualization and Modeling (Workshop Abstract)”, Proceedings of the CELLmicrocosmos neXt workshop, B. Sommer, ed., Bielefeld: 2014, pp.20-21.PUB | PDF | DOI
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2710884O.V. Popik, et al., “Analysis of signaling networks distributed over intracellular compartments based on protein-protein interactions”, BMC Genomics, vol. 15, 2014, : S7.PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2664859G. Lukat, B. Sommer, and J. Krüger, “Membrane simulation analysis using Voronoi tessellation (Conference Abstract)”, Journal of Cheminformatics, Journal of Cheminformatics, vol. 6, Springer Science and Business Media LLC, 2014.PUB | DOI
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2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2693254T. Waltemate, B. Sommer, and M. Botsch, “Membrane Mapping: Combining Mesoscopic and Molecular Cell Visualization”, Proceedings of Eurographics Workshop on Visual Computing for Biology and Medicine, Eurographics Association, 2014, pp.89-96.PUB | DOI
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560817B. Sommer, et al., “Subcellular localization charts: a new visual methodology for the semi-automatic localization of protein-related data sets”, Journal of Bioinformatics and Computational Biology, vol. 11, 2013, : 1340005.PUB | DOI | WoS | PubMed | Europe PMC
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645319G. Lukat, J. Krueger, and B. Sommer, “APL@Voro: A Voronoi-Based Membrane Analysis Tool for GROMACS Trajectories”, Journal Of Chemical Information And Modeling, vol. 53, 2013, pp. 2908-2925.PUB | DOI | WoS | PubMed | Europe PMC
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2576375B. Sommer, “Membrane Packing Problems: A short Review on computational Membrane Modeling Methods and Tools”, Computational and Structural Biotechnology Journal, vol. 5, 2013, : e201302014.PUB | DOI | PubMed | Europe PMC
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901699R. Hofestädt, et al., “Editorial: JIBtools - a Strategy to Reduce the Bioinformatics Analysis Gap”, Journal of Integrative Bioinformatics, vol. 10, 2013, pp. 226.PUB
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2012 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2467408S. Rubert, et al., “Grid Workflow Approach using the CELLmicrocosmos 2.2 MembraneEditor and UNICORE to commit and monitor GROMACS Jobs”, CEUR Workshop Proceedings, K.-D. Warzecha and L. Packschies, eds., vol. 826, CEUR-WS, 2012.PUB | Download (ext.)
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2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2375173B. Sommer, et al., “Coarse-grained and all-atom MD simulations with Gromacs based on CELLmicrocosmos 2.2 model membranes (Conference Abstract)”, Journal of Cheminformatics, Journal of Cheminformatics, vol. 3, Springer Science and Business Media LLC, 2011.PUB | DOI
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289773B. Sommer, et al., “CELLmicrocosmos 2.2 Membrane Editor: A Modular Interactive Shape-Based Software Approach To Solve Heterogeneous Membrane Packing Problems”, Journal of Chemical Information and Modeling, vol. 51, 2011, pp. 1165-1182.PUB | DOI | WoS | PubMed | Europe PMC
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2374757B. Sommer, et al., “Visualization and Analysis of a Cardio Vascular Disease-and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches”, Journal of Integrative Bioinformatics, vol. 7, 2010, pp. 148.PUB | DOI | PubMed | Europe PMC
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2010 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1785479B. Sommer, et al., “CELLmicrocosmos 2.2: advancements and applications in modeling of three-dimensional PDB membranes (Conference Abstract)”, Journal of Cheminformatics, Journal of Cheminformatics, vol. 2(Suppl 1):O21, Springer Science and Business Media LLC, 2010.PUB | PDF | DOI
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2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2002601B. Sommer, et al., “CELLMICROCOSMOS 4.1, An Interactive Approach to Integrating Spatially Localized Metabolic Networks into a Virtual 3D Cell Environment.”, Presented at the BIOINFORMATICS 2010, Valencia, Spain, INSTICC - Institute for Systems and Technologies of Information, Control and Communication, 2010.PUB
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2009 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1785172B. Sommer, T. Dingersen, and S. Schneider, “CELLmicrocosmos 2.1: a software approach for the modelling of three-dimensional PDB membranes (Conference Abstract)”, Chemistry Central Journal, Chemistry Central Journal, vol. 3(Suppl 1):P72, Springer Science and Business Media LLC, 2009.PUB | PDF | DOI