27 Publikationen
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901345Mueller, Sabine C., Sommer, Björn, Backes, Christina, Haas, Jan, Meder, Benjamin, Meese, Eckart, and Keller, Andreas. “From single variants to protein cascades multiscale modeling of single nucleotide variant sets in genetic disorders”. Journal of Biological Chemistry 291.4 (2016): 1582-1590.PUB | DOI | WoS | PubMed | Europe PMC
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2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704602Biere, Niklas, Doebbe, Anja, Rothe, Nils, Huser, Thomas, Kruse, Olaf, and Sommer, Björn. “Towards a 3D Cell Model of Chlamydomonas reinhardtii (Workshop Abstract)”. Proceedings of the CELLmicrocosmos neXt workshop. Ed. Björn Sommer. Bielefeld: Bielefeld University, 2014. 9-10.PUB | PDF | DOI
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2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704619Wallmeyer, Thorben, Sommer, Björn, and Kormeier, Benjamin. “Towards Pathway Prediction and Subcellular Localization by using FraMeTex (Workshop Abstract)”. Proceedings of the CELLmicrocosmos neXt workshop. Ed. Björn Sommer. Bielefeld: Bielefeld University, 2014. 18-19.PUB | PDF | DOI
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2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704665Kovanci, Gökhan, and Sommer, Björn. “Towards a Web-based Visualization for the CELLmicrocosmos 4 PathwayIntegration (Workshop Abstract)”. Proceedings of the CELLmicrocosmos neXt workshop. Ed. Björn Sommer. Bielefeld: Bielefeld University, 2014. 14-15.PUB | PDF | DOI
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2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704586Popik, Olga V., Sommer, Björn, Hofestädt, Ralf, and Ivanisenko, Vladimir A. “Evaluation and Visualization of Pathway Efficiency based on Subcellular Protein Localizations (Workshop Abstract)”. Proceedings of the CELLmicrocosmos neXt workshop. Ed. Björn Sommer. Bielefeld: Bielefeld University, 2014. 9-10.PUB | PDF | DOI
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2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704564Sommer, Björn, and Chen, Ming. “A novel Lecture Program in Bioinformatics: Interdisciplinary Cell Visualization and Modeling (Workshop Abstract)”. Proceedings of the CELLmicrocosmos neXt workshop. Ed. Björn Sommer. Bielefeld, 2014. 20-21.PUB | PDF | DOI
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2710884Popik, Olga V., Saik, Olga V., Petrovskiy, Evgeny D., Sommer, Björn, Hofestädt, Ralf, Lavrik, Inna N., and Ivanisenko, Vladimir A. “Analysis of signaling networks distributed over intracellular compartments based on protein-protein interactions”. BMC Genomics 15.Suppl 12 (2014): S7.PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2664859Lukat, Gunther, Sommer, Björn, and Krüger, Jens. “Membrane simulation analysis using Voronoi tessellation (Conference Abstract)”. Journal of Cheminformatics. Springer Science and Business Media LLC, 2014.Vol. 6. Journal of Cheminformatics.PUB | DOI
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2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2693254Waltemate, Thomas, Sommer, Björn, and Botsch, Mario. “Membrane Mapping: Combining Mesoscopic and Molecular Cell Visualization”. Proceedings of Eurographics Workshop on Visual Computing for Biology and Medicine. Eurographics Association, 2014. 89-96.PUB | DOI
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560817Sommer, Björn, Kormeier, Benjamin, Demenkov, Pavel S., Arrigo, Patrizio, Hippe, Klaus, Ates, Özgür, Kochetov, Alexey V., Ivanisenko, Vladimir A., Kolchanov, Nikolay A., and Hofestädt, Ralf. “Subcellular localization charts: a new visual methodology for the semi-automatic localization of protein-related data sets”. Journal of Bioinformatics and Computational Biology 11.01 (2013): 1340005.PUB | DOI | WoS | PubMed | Europe PMC
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645319Lukat, Gunther, Krueger, Jens, and Sommer, Björn. “APL@Voro: A Voronoi-Based Membrane Analysis Tool for GROMACS Trajectories”. Journal Of Chemical Information And Modeling 53.11 (2013): 2908-2925.PUB | DOI | WoS | PubMed | Europe PMC
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2576375Sommer, Björn. “Membrane Packing Problems: A short Review on computational Membrane Modeling Methods and Tools”. Computational and Structural Biotechnology Journal 5.6 (2013): e201302014.PUB | DOI | PubMed | Europe PMC
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901699Hofestädt, Ralf, Kormeier, Benjamin, Lange, Matthias, Schreiber, Falk, Sommer, Björn, and Weise, Stefan. “Editorial: JIBtools - a Strategy to Reduce the Bioinformatics Analysis Gap”. Journal of Integrative Bioinformatics 10.1 (2013): 226.PUB
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2012 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2467408Rubert, Sebastian, Gamroth, Christian, Krüger, Jens, and Sommer, Björn. “Grid Workflow Approach using the CELLmicrocosmos 2.2 MembraneEditor and UNICORE to commit and monitor GROMACS Jobs”. CEUR Workshop Proceedings. Ed. Klaus-Dieter Warzecha and Lars Packschies. CEUR-WS, 2012.Vol. 826.PUB | Download (ext.)
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2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2375173Sommer, Björn, Dingersen, T., Gamroth, C., Heissmann, A. J., Lukat, G., Rotzoll, R., Rubert, S., Schäfer, A., and Krüger, J. “Coarse-grained and all-atom MD simulations with Gromacs based on CELLmicrocosmos 2.2 model membranes (Conference Abstract)”. Journal of Cheminformatics. Springer Science and Business Media LLC, 2011.Vol. 3. Journal of Cheminformatics.PUB | DOI
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289773Sommer, Björn, Dingersen, Tim, Gamroth, Christian, Schneider, Sebastian E., Robert, Sebastian, Krueger, Jens, and Dietz, Karl-Josef. “CELLmicrocosmos 2.2 Membrane Editor: A Modular Interactive Shape-Based Software Approach To Solve Heterogeneous Membrane Packing Problems”. Journal of Chemical Information and Modeling 51.5 (2011): 1165-1182.PUB | DOI | WoS | PubMed | Europe PMC
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2374757Sommer, Björn, Tiys, E. S, Kormeier, Benjamin, Hippe, Klaus, Janowski, Sebastian Jan, Ivanisenko, T. V, Bragin, A. O, Arrigo, P., Demenkov, P. S, Kochetov, A. V, Ivanisenko, V.A., Kolchanov, N. A., and Hofestädt, Ralf. “Visualization and Analysis of a Cardio Vascular Disease-and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches”. Journal of Integrative Bioinformatics 7.1 (2010): 148.PUB | DOI | PubMed | Europe PMC
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2010 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1785479Sommer, Björn, Dingersen, T., Schneider, S., Rubert, S., and Gamroth, C. “CELLmicrocosmos 2.2: advancements and applications in modeling of three-dimensional PDB membranes (Conference Abstract)”. Journal of Cheminformatics. Springer Science and Business Media LLC, 2010.Vol. 2(Suppl 1):O21. Journal of Cheminformatics.PUB | PDF | DOI
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2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2002601Sommer, Björn, Künsemöller, Jörn, Sand, Norbert, Husemann, Arne, Rumming, Madis, and Kormeier, Benjamin. “CELLMICROCOSMOS 4.1, An Interactive Approach to Integrating Spatially Localized Metabolic Networks into a Virtual 3D Cell Environment.”. Presented at the BIOINFORMATICS 2010, Valencia, Spain, INSTICC - Institute for Systems and Technologies of Information, Control and Communication, 2010.PUB
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2009 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1785172Sommer, Björn, Dingersen, T., and Schneider, S. “CELLmicrocosmos 2.1: a software approach for the modelling of three-dimensional PDB membranes (Conference Abstract)”. Chemistry Central Journal. Springer Science and Business Media LLC, 2009.Vol. 3(Suppl 1):P72. Chemistry Central Journal.PUB | PDF | DOI