27 Publikationen
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914424Integration and virtual reality exploration of biomedical data with CmPI and VANTEDPUB | DOI | WoS
Sommer, Björn, Integration and virtual reality exploration of biomedical data with CmPI and VANTED. IT-INFORMATION TECHNOLOGY 59 (4). , 2017 -
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901345From single variants to protein cascades multiscale modeling of single nucleotide variant sets in genetic disordersPUB | DOI | WoS | PubMed | Europe PMC
Mueller, Sabine C., From single variants to protein cascades multiscale modeling of single nucleotide variant sets in genetic disorders. Journal of Biological Chemistry 291 (4). , 2016 -
2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704602Towards a 3D Cell Model of Chlamydomonas reinhardtii (Workshop Abstract)PUB | PDF | DOI
Biere, Niklas, Towards a 3D Cell Model of Chlamydomonas reinhardtii (Workshop Abstract). Proceedings of the CELLmicrocosmos neXt workshop (). Bielefeld, 2014 -
2014 | Konferenzband | Veröffentlicht | PUB-ID: 2704570Proceedings of CELLmicrocosmos neXt 2014PUB | PDF | DOI
Sommer, Björn, Proceedings of CELLmicrocosmos neXt 2014. (). Bielefeld, 2014 -
2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704619Towards Pathway Prediction and Subcellular Localization by using FraMeTex (Workshop Abstract)PUB | PDF | DOI
Wallmeyer, Thorben, Towards Pathway Prediction and Subcellular Localization by using FraMeTex (Workshop Abstract). Proceedings of the CELLmicrocosmos neXt workshop (). Bielefeld, 2014 -
2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704665Towards a Web-based Visualization for the CELLmicrocosmos 4 PathwayIntegration (Workshop Abstract)PUB | PDF | DOI
Kovanci, Gökhan, Towards a Web-based Visualization for the CELLmicrocosmos 4 PathwayIntegration (Workshop Abstract). Proceedings of the CELLmicrocosmos neXt workshop (). Bielefeld, 2014 -
2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704586Evaluation and Visualization of Pathway Efficiency based on Subcellular Protein Localizations (Workshop Abstract)PUB | PDF | DOI
Popik, Olga V., Evaluation and Visualization of Pathway Efficiency based on Subcellular Protein Localizations (Workshop Abstract). Proceedings of the CELLmicrocosmos neXt workshop (). Bielefeld, 2014 -
2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704580CELLmicrocosmos X (Workshop Abstract)PUB | PDF | DOI
Sommer, Björn, CELLmicrocosmos X (Workshop Abstract). Proceedings of the CELLmicrocosmos neXt workshop (). Bielefeld, 2014 -
2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704564A novel Lecture Program in Bioinformatics: Interdisciplinary Cell Visualization and Modeling (Workshop Abstract)PUB | PDF | DOI
Sommer, Björn, A novel Lecture Program in Bioinformatics: Interdisciplinary Cell Visualization and Modeling (Workshop Abstract). Proceedings of the CELLmicrocosmos neXt workshop (). Bielefeld, 2014 -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2710884Analysis of signaling networks distributed over intracellular compartments based on protein-protein interactionsPUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Popik, Olga V., Analysis of signaling networks distributed over intracellular compartments based on protein-protein interactions. BMC Genomics 15 (Suppl 12). , 2014 -
2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2664859Membrane simulation analysis using Voronoi tessellation (Conference Abstract)PUB | DOI
Lukat, Gunther, Membrane simulation analysis using Voronoi tessellation (Conference Abstract). Journal of Cheminformatics 6 (Suppl 1). , 2014 -
2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2693254Membrane Mapping: Combining Mesoscopic and Molecular Cell VisualizationPUB | DOI
Waltemate, Thomas, Membrane Mapping: Combining Mesoscopic and Molecular Cell Visualization. Proceedings of Eurographics Workshop on Visual Computing for Biology and Medicine (). , 2014 -
2014 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2664837Network Analysis and Integration in a Virtual Cell EnvironmentPUB | DOI
Sommer, Björn, Network Analysis and Integration in a Virtual Cell Environment. Approaches in Integrative Bioinformatics (). Berlin, Heidelberg, 2014 -
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2661812Stereoscopic cell visualization: from mesoscopic to molecular scalePUB | DOI | WoS
Sommer, Björn, Stereoscopic cell visualization: from mesoscopic to molecular scale. Journal of Electronic Imaging 23 (1). , 2014 -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560817Subcellular localization charts: a new visual methodology for the semi-automatic localization of protein-related data setsPUB | DOI | WoS | PubMed | Europe PMC
Sommer, Björn, Subcellular localization charts: a new visual methodology for the semi-automatic localization of protein-related data sets. Journal of Bioinformatics and Computational Biology 11 (01). , 2013 -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645319APL@Voro: A Voronoi-Based Membrane Analysis Tool for GROMACS TrajectoriesPUB | DOI | WoS | PubMed | Europe PMC
Lukat, Gunther, APL@Voro: A Voronoi-Based Membrane Analysis Tool for GROMACS Trajectories. Journal Of Chemical Information And Modeling 53 (11). , 2013 -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2576375Membrane Packing Problems: A short Review on computational Membrane Modeling Methods and ToolsPUB | DOI | PubMed | Europe PMC
Sommer, Björn, Membrane Packing Problems: A short Review on computational Membrane Modeling Methods and Tools. Computational and Structural Biotechnology Journal 5 (6). , 2013 -
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901699Editorial: JIBtools - a Strategy to Reduce the Bioinformatics Analysis GapPUB
Hofestädt, Ralf, Editorial: JIBtools - a Strategy to Reduce the Bioinformatics Analysis Gap. Journal of Integrative Bioinformatics 10 (1). , 2013 -
2012 | Bielefelder E-Dissertation | PUB-ID: 2557380CELLmicrocosmos - Integrative cell modeling at the molecular, mesoscopic and functional levelPUB | PDF
Sommer, Björn, CELLmicrocosmos - Integrative cell modeling at the molecular, mesoscopic and functional level. (). Bielefeld, 2012 -
2012 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2467408Grid Workflow Approach using the CELLmicrocosmos 2.2 MembraneEditor and UNICORE to commit and monitor GROMACS JobsPUB | Download (ext.)
Rubert, Sebastian, Grid Workflow Approach using the CELLmicrocosmos 2.2 MembraneEditor and UNICORE to commit and monitor GROMACS Jobs. CEUR Workshop Proceedings 826 (). , 2012 -
2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2375173Coarse-grained and all-atom MD simulations with Gromacs based on CELLmicrocosmos 2.2 model membranes (Conference Abstract)PUB | DOI
Sommer, Björn, Coarse-grained and all-atom MD simulations with Gromacs based on CELLmicrocosmos 2.2 model membranes (Conference Abstract). Journal of Cheminformatics 3 (Suppl 1). , 2011 -
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289773CELLmicrocosmos 2.2 Membrane Editor: A Modular Interactive Shape-Based Software Approach To Solve Heterogeneous Membrane Packing ProblemsPUB | DOI | WoS | PubMed | Europe PMC
Sommer, Björn, CELLmicrocosmos 2.2 Membrane Editor: A Modular Interactive Shape-Based Software Approach To Solve Heterogeneous Membrane Packing Problems. Journal of Chemical Information and Modeling 51 (5). , 2011 -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2374757Visualization and Analysis of a Cardio Vascular Disease-and MUPP1-related Biological Network combining Text Mining and Data Warehouse ApproachesPUB | DOI | PubMed | Europe PMC
Sommer, Björn, Visualization and Analysis of a Cardio Vascular Disease-and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches. Journal of Integrative Bioinformatics 7 (1). , 2010 -
2010 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1785479CELLmicrocosmos 2.2: advancements and applications in modeling of three-dimensional PDB membranes (Conference Abstract)PUB | PDF | DOI
Sommer, Björn, CELLmicrocosmos 2.2: advancements and applications in modeling of three-dimensional PDB membranes (Conference Abstract). Journal of Cheminformatics 2(Suppl 1):O21 (S1). , 2010 -
2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2002601CELLMICROCOSMOS 4.1, An Interactive Approach to Integrating Spatially Localized Metabolic Networks into a Virtual 3D Cell Environment.PUB
Sommer, Björn, CELLMICROCOSMOS 4.1, An Interactive Approach to Integrating Spatially Localized Metabolic Networks into a Virtual 3D Cell Environment.. (). , 2010 -
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929144Membranen für allePUB | DOI | WoS
Sommer, Björn, Membranen für alle. NACHRICHTEN AUS DER CHEMIE 58 (10). , 2010 -
2009 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1785172CELLmicrocosmos 2.1: a software approach for the modelling of three-dimensional PDB membranes (Conference Abstract)PUB | PDF | DOI
Sommer, Björn, CELLmicrocosmos 2.1: a software approach for the modelling of three-dimensional PDB membranes (Conference Abstract). Chemistry Central Journal 3(Suppl 1):P72 (S1). , 2009