27 Publikationen
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901345Mueller, S. C.; Sommer, B.; Backes, C.; Haas, J.; Meder, B.; Meese, E.; Keller, A. (2016): From single variants to protein cascades multiscale modeling of single nucleotide variant sets in genetic disorders Journal of Biological Chemistry,291:(4): 1582-1590.PUB | DOI | WoS | PubMed | Europe PMC
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2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704602Biere, N.; Doebbe, A.; Rothe, N.; Huser, T.; Kruse, O.; Sommer, B. (2014): Towards a 3D Cell Model of Chlamydomonas reinhardtii (Workshop Abstract). In: Björn Sommer (Hrsg.): Proceedings of the CELLmicrocosmos neXt workshop. Bielefeld: Bielefeld University. S. 9-10.PUB | PDF | DOI
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2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704619Wallmeyer, T.; Sommer, B.; Kormeier, B. (2014): Towards Pathway Prediction and Subcellular Localization by using FraMeTex (Workshop Abstract). In: Björn Sommer (Hrsg.): Proceedings of the CELLmicrocosmos neXt workshop. Bielefeld: Bielefeld University. S. 18-19.PUB | PDF | DOI
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2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704665Kovanci, G.; Sommer, B. (2014): Towards a Web-based Visualization for the CELLmicrocosmos 4 PathwayIntegration (Workshop Abstract). In: Björn Sommer (Hrsg.): Proceedings of the CELLmicrocosmos neXt workshop. Bielefeld: Bielefeld University. S. 14-15.PUB | PDF | DOI
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2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704586Popik, O. V.; Sommer, B.; Hofestädt, R.; Ivanisenko, V. A. (2014): Evaluation and Visualization of Pathway Efficiency based on Subcellular Protein Localizations (Workshop Abstract). In: Björn Sommer (Hrsg.): Proceedings of the CELLmicrocosmos neXt workshop. Bielefeld: Bielefeld University. S. 9-10.PUB | PDF | DOI
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2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704564Sommer, B.; Chen, M. (2014): A novel Lecture Program in Bioinformatics: Interdisciplinary Cell Visualization and Modeling (Workshop Abstract). In: Björn Sommer (Hrsg.): Proceedings of the CELLmicrocosmos neXt workshop. Bielefeld. S. 20-21.PUB | PDF | DOI
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2710884Popik, O. V.; Saik, O. V.; Petrovskiy, E. D.; Sommer, B.; Hofestädt, R.; Lavrik, I. N.; Ivanisenko, V. A. (2014): Analysis of signaling networks distributed over intracellular compartments based on protein-protein interactions BMC Genomics,15:(Suppl 12):S7PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2664859Lukat, G.; Sommer, B.; Krüger, J. (2014): Membrane simulation analysis using Voronoi tessellation (Conference Abstract). In: Journal of Cheminformatics. Springer Science and Business Media LLC. (Journal of Cheminformatics, 6).PUB | DOI
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2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2693254Waltemate, T.; Sommer, B.; Botsch, M. (2014): Membrane Mapping: Combining Mesoscopic and Molecular Cell Visualization. In: Proceedings of Eurographics Workshop on Visual Computing for Biology and Medicine. Eurographics Association. S. 89-96.PUB | DOI
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560817Sommer, B.; Kormeier, B.; Demenkov, P. S.; Arrigo, P.; Hippe, K.; Ates, Ö.; Kochetov, A. V.; Ivanisenko, V. A.; Kolchanov, N. A.; Hofestädt, R. (2013): Subcellular localization charts: a new visual methodology for the semi-automatic localization of protein-related data sets Journal of Bioinformatics and Computational Biology,11:(01):1340005PUB | DOI | WoS | PubMed | Europe PMC
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645319Lukat, G.; Krueger, J.; Sommer, B. (2013): APL@Voro: A Voronoi-Based Membrane Analysis Tool for GROMACS Trajectories Journal Of Chemical Information And Modeling,53:(11): 2908-2925.PUB | DOI | WoS | PubMed | Europe PMC
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2576375Sommer, B. (2013): Membrane Packing Problems: A short Review on computational Membrane Modeling Methods and Tools Computational and Structural Biotechnology Journal,5:(6):e201302014PUB | DOI | PubMed | Europe PMC
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901699Hofestädt, R.; Kormeier, B.; Lange, M.; Schreiber, F.; Sommer, B.; Weise, S. (2013): Editorial: JIBtools - a Strategy to Reduce the Bioinformatics Analysis Gap Journal of Integrative Bioinformatics,10:(1): 226.PUB
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2012 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2467408Rubert, S.; Gamroth, C.; Krüger, J.; Sommer, B. (2012): Grid Workflow Approach using the CELLmicrocosmos 2.2 MembraneEditor and UNICORE to commit and monitor GROMACS Jobs. In: Klaus-Dieter Warzecha; Lars Packschies (Hrsg.): CEUR Workshop Proceedings. CEUR-WS. (826).PUB | Download (ext.)
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2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2375173Sommer, B.; Dingersen, T.; Gamroth, C.; Heissmann, A. J.; Lukat, G.; Rotzoll, R.; Rubert, S.; Schäfer, A.; Krüger, J. (2011): Coarse-grained and all-atom MD simulations with Gromacs based on CELLmicrocosmos 2.2 model membranes (Conference Abstract). In: Journal of Cheminformatics. Springer Science and Business Media LLC. (Journal of Cheminformatics, 3).PUB | DOI
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289773Sommer, B.; Dingersen, T.; Gamroth, C.; Schneider, S. E.; Robert, S.; Krueger, J.; Dietz, K. - J. (2011): CELLmicrocosmos 2.2 Membrane Editor: A Modular Interactive Shape-Based Software Approach To Solve Heterogeneous Membrane Packing Problems Journal of Chemical Information and Modeling,51:(5): 1165-1182.PUB | DOI | WoS | PubMed | Europe PMC
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2374757Sommer, B.; Tiys, E. S.; Kormeier, B.; Hippe, K.; Janowski, S. J.; Ivanisenko, T. V.; Bragin, A. O.; Arrigo, P.; Demenkov, P. S.; Kochetov, A. V.; Ivanisenko, V. A.; Kolchanov, N. A.; Hofestädt, R. (2010): Visualization and Analysis of a Cardio Vascular Disease-and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches Journal of Integrative Bioinformatics,7:(1): 148.PUB | DOI | PubMed | Europe PMC
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2010 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1785479Sommer, B.; Dingersen, T.; Schneider, S.; Rubert, S.; Gamroth, C. (2010): CELLmicrocosmos 2.2: advancements and applications in modeling of three-dimensional PDB membranes (Conference Abstract). In: Journal of Cheminformatics. Springer Science and Business Media LLC. (Journal of Cheminformatics, 2(Suppl 1):O21).PUB | PDF | DOI
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2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2002601Sommer, B.; Künsemöller, J.; Sand, N.; Husemann, A.; Rumming, M.; Kormeier, B. (2010): CELLMICROCOSMOS 4.1, An Interactive Approach to Integrating Spatially Localized Metabolic Networks into a Virtual 3D Cell Environment. INSTICC - Institute for Systems and Technologies of Information, Control and Communication.PUB
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2009 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1785172Sommer, B.; Dingersen, T.; Schneider, S. (2009): CELLmicrocosmos 2.1: a software approach for the modelling of three-dimensional PDB membranes (Conference Abstract). In: Chemistry Central Journal. Springer Science and Business Media LLC. (Chemistry Central Journal, 3(Suppl 1):P72).PUB | PDF | DOI