PUB - Publikationen an der Universität Bielefeld

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• [27]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914424

  Sommer, B., & Schreiber, F., 2017. Integration and virtual reality exploration of biomedical data with CmPI and VANTED. IT-INFORMATION TECHNOLOGY, 59(4), p 181-190.

  PUB | DOI | WoS
   
• [26]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901345

  Mueller, S.C., et al., 2016. From single variants to protein cascades multiscale modeling of single nucleotide variant sets in genetic disorders. Journal of Biological Chemistry, 291(4), p 1582-1590.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [25]
  

  2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704602

  Biere, N., et al., 2014. Towards a 3D Cell Model of Chlamydomonas reinhardtii (Workshop Abstract). In B. Sommer, ed. Proceedings of the CELLmicrocosmos neXt workshop. Bielefeld: Bielefeld University, pp. 9-10.

  PUB | PDF | DOI
   
• [24]
  

  2014 | Konferenzband | Veröffentlicht | PUB-ID: 2704570

  B. Sommer, ed., 2014. Proceedings of CELLmicrocosmos neXt 2014, Bielefeld: Bielefeld University.

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• [23]
  

  2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704619

  Wallmeyer, T., Sommer, B., & Kormeier, B., 2014. Towards Pathway Prediction and Subcellular Localization by using FraMeTex (Workshop Abstract). In B. Sommer, ed. Proceedings of the CELLmicrocosmos neXt workshop. Bielefeld: Bielefeld University, pp. 18-19.

  PUB | PDF | DOI
   
• [22]
  

  2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704665

  Kovanci, G., & Sommer, B., 2014. Towards a Web-based Visualization for the CELLmicrocosmos 4 PathwayIntegration (Workshop Abstract). In B. Sommer, ed. Proceedings of the CELLmicrocosmos neXt workshop. Bielefeld: Bielefeld University, pp. 14-15.

  PUB | PDF | DOI
   
• [21]
  

  2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704586

  Popik, O.V., et al., 2014. Evaluation and Visualization of Pathway Efficiency based on Subcellular Protein Localizations (Workshop Abstract). In B. Sommer, ed. Proceedings of the CELLmicrocosmos neXt workshop. Bielefeld: Bielefeld University, pp. 9-10.

  PUB | PDF | DOI
   
• [20]
  

  2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704580

  Sommer, B., 2014. CELLmicrocosmos X (Workshop Abstract). In B. Sommer, ed. Proceedings of the CELLmicrocosmos neXt workshop. Bielefeld: Bielefeld University, pp. 5-6.

  PUB | PDF | DOI
   
• [19]
  

  2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704564

  Sommer, B., & Chen, M., 2014. A novel Lecture Program in Bioinformatics: Interdisciplinary Cell Visualization and Modeling (Workshop Abstract). In B. Sommer, ed. Proceedings of the CELLmicrocosmos neXt workshop. Bielefeld, pp. 20-21.

  PUB | PDF | DOI
   
• [18]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2710884

  Popik, O.V., et al., 2014. Analysis of signaling networks distributed over intracellular compartments based on protein-protein interactions. BMC Genomics, 15(Suppl 12): S7.

  PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
   
• [17]
  

  2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2664859

  Lukat, G., Sommer, B., & Krüger, J., 2014. Membrane simulation analysis using Voronoi tessellation (Conference Abstract). In Journal of Cheminformatics. Journal of Cheminformatics. no.6 Springer Science and Business Media LLC.

  PUB | DOI
   
• [16]
  

  2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2693254

  Waltemate, T., Sommer, B., & Botsch, M., 2014. Membrane Mapping: Combining Mesoscopic and Molecular Cell Visualization. In Proceedings of Eurographics Workshop on Visual Computing for Biology and Medicine. Eurographics Association, pp. 89-96.

  PUB | DOI
   
• [15]
  

  2014 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2664837

  Sommer, B., 2014. Network Analysis and Integration in a Virtual Cell Environment. In M. Chen & R. Hofestädt, eds. Approaches in Integrative Bioinformatics. Berlin, Heidelberg: Springer Berlin Heidelberg, pp. 275-297.

  PUB | DOI
   
• [14]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2661812

  Sommer, B., et al., 2014. Stereoscopic cell visualization: from mesoscopic to molecular scale. Journal of Electronic Imaging, 23(1): 11007.

  PUB | DOI | WoS
   
• [13]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560817

  Sommer, B., et al., 2013. Subcellular localization charts: a new visual methodology for the semi-automatic localization of protein-related data sets. Journal of Bioinformatics and Computational Biology, 11(01): 1340005.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [12]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645319

  Lukat, G., Krueger, J., & Sommer, B., 2013. APL@Voro: A Voronoi-Based Membrane Analysis Tool for GROMACS Trajectories. Journal Of Chemical Information And Modeling, 53(11), p 2908-2925.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [11]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2576375

  Sommer, B., 2013. Membrane Packing Problems: A short Review on computational Membrane Modeling Methods and Tools. Computational and Structural Biotechnology Journal, 5(6): e201302014.

  PUB | DOI | PubMed | Europe PMC
   
• [10]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901699

  Hofestädt, R., et al., 2013. Editorial: JIBtools - a Strategy to Reduce the Bioinformatics Analysis Gap. Journal of Integrative Bioinformatics, 10(1), p 226.

  PUB
   
• [9]
  

  2012 | Bielefelder E-Dissertation | PUB-ID: 2557380

  Sommer, B., 2012. CELLmicrocosmos - Integrative cell modeling at the  molecular, mesoscopic and functional level, Bielefeld: Bielefeld University.

  PUB | PDF
   
• [8]
  

  2012 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2467408

  Rubert, S., et al., 2012. Grid Workflow Approach using the CELLmicrocosmos 2.2 MembraneEditor and UNICORE to commit and monitor GROMACS Jobs. In K. - D. Warzecha & L. Packschies, eds. CEUR Workshop Proceedings. no.826 CEUR-WS.

  PUB | Download (ext.)
   
• [7]
  

  2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2375173

  Sommer, B., et al., 2011. Coarse-grained and all-atom MD simulations with Gromacs based on CELLmicrocosmos 2.2 model membranes (Conference Abstract). In Journal of Cheminformatics. Journal of Cheminformatics. no.3 Springer Science and Business Media LLC.

  PUB | DOI
   
• [6]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289773

  Sommer, B., et al., 2011. CELLmicrocosmos 2.2 Membrane Editor: A Modular Interactive Shape-Based Software Approach To Solve Heterogeneous Membrane Packing Problems. Journal of Chemical Information and Modeling, 51(5), p 1165-1182.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [5]
  

  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2374757

  Sommer, B., et al., 2010. Visualization and Analysis of a Cardio Vascular Disease-and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches. Journal of Integrative Bioinformatics, 7(1), p 148.

  PUB | DOI | PubMed | Europe PMC
   
• [4]
  

  2010 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1785479

  Sommer, B., et al., 2010. CELLmicrocosmos 2.2: advancements and applications in modeling of three-dimensional PDB membranes (Conference Abstract). In Journal of Cheminformatics. Journal of Cheminformatics. no.2(Suppl 1):O21 Springer Science and Business Media LLC.

  PUB | PDF | DOI
   
• [3]
  

  2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2002601

  Sommer, B., et al., 2010. CELLMICROCOSMOS 4.1, An Interactive Approach to Integrating Spatially Localized Metabolic Networks into a Virtual 3D Cell Environment. Presented at the BIOINFORMATICS 2010, Valencia, Spain.

  PUB
   
• [2]
  

  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929144

  Sommer, B., 2010. Membranen für alle. NACHRICHTEN AUS DER CHEMIE, 58(10), p 1030-1032.

  PUB | DOI | WoS
   
• [1]
  

  2009 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1785172

  Sommer, B., Dingersen, T., & Schneider, S., 2009. CELLmicrocosmos 2.1: a software approach for the modelling of three-dimensional PDB membranes (Conference Abstract). In Chemistry Central Journal. Chemistry Central Journal. no.3(Suppl 1):P72 Springer Science and Business Media LLC.

  PUB | PDF | DOI