Björn Sommer

bjsommer@techfak.uni-bielefeld.de
PEVZ-ID
143950

27 Publikationen

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  • [27]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914424
    Sommer B, Schreiber F (2017)
    Integration and virtual reality exploration of biomedical data with CmPI and VANTED.
    IT-INFORMATION TECHNOLOGY 59(4): 181-190.
    PUB | DOI | WoS
     
  • [26]
    2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901345
    Mueller SC, Sommer B, Backes C, Haas J, Meder B, Meese E, Keller A (2016)
    From single variants to protein cascades multiscale modeling of single nucleotide variant sets in genetic disorders.
    Journal of Biological Chemistry 291(4): 1582-1590.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [25]
    2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704602 OA
    Biere N, Doebbe A, Rothe N, Huser T, Kruse O, Sommer B (2014)
    Towards a 3D Cell Model of Chlamydomonas reinhardtii (Workshop Abstract).
    In: Proceedings of the CELLmicrocosmos neXt workshop. Sommer B (Ed); Bielefeld: Bielefeld University: 9-10.
    PUB | PDF | DOI
     
  • [24]
    2014 | Konferenzband | Veröffentlicht | PUB-ID: 2704570 OA
    Sommer B (Ed) (2014)
    Proceedings of CELLmicrocosmos neXt 2014.
    Bielefeld: Bielefeld University.
    PUB | PDF | DOI
     
  • [23]
    2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704619 OA
    Wallmeyer T, Sommer B, Kormeier B (2014)
    Towards Pathway Prediction and Subcellular Localization by using FraMeTex (Workshop Abstract).
    In: Proceedings of the CELLmicrocosmos neXt workshop. Sommer B (Ed); Bielefeld: Bielefeld University: 18-19.
    PUB | PDF | DOI
     
  • [22]
    2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704665 OA
    Kovanci G, Sommer B (2014)
    Towards a Web-based Visualization for the CELLmicrocosmos 4 PathwayIntegration (Workshop Abstract).
    In: Proceedings of the CELLmicrocosmos neXt workshop. Sommer B (Ed); Bielefeld: Bielefeld University: 14-15.
    PUB | PDF | DOI
     
  • [21]
    2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704586 OA
    Popik OV, Sommer B, Hofestädt R, Ivanisenko VA (2014)
    Evaluation and Visualization of Pathway Efficiency based on Subcellular Protein Localizations (Workshop Abstract).
    In: Proceedings of the CELLmicrocosmos neXt workshop. Sommer B (Ed); Bielefeld: Bielefeld University: 9-10.
    PUB | PDF | DOI
     
  • [20]
    2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704580 OA
    Sommer B (2014)
    CELLmicrocosmos X (Workshop Abstract).
    In: Proceedings of the CELLmicrocosmos neXt workshop. Sommer B (Ed); Bielefeld: Bielefeld University: 5-6.
    PUB | PDF | DOI
     
  • [19]
    2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704564 OA
    Sommer B, Chen M (2014)
    A novel Lecture Program in Bioinformatics: Interdisciplinary Cell Visualization and Modeling (Workshop Abstract).
    In: Proceedings of the CELLmicrocosmos neXt workshop. Sommer B (Ed); Bielefeld: 20-21.
    PUB | PDF | DOI
     
  • [18]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2710884
    Popik OV, Saik OV, Petrovskiy ED, Sommer B, Hofestädt R, Lavrik IN, Ivanisenko VA (2014)
    Analysis of signaling networks distributed over intracellular compartments based on protein-protein interactions.
    BMC Genomics 15(Suppl 12): S7.
    PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
     
  • [17]
    2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2664859
    Lukat G, Sommer B, Krüger J (2014)
    Membrane simulation analysis using Voronoi tessellation (Conference Abstract).
    In: Journal of Cheminformatics. Journal of Cheminformatics, 6. Springer Science and Business Media LLC.
    PUB | DOI
     
  • [16]
    2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2693254
    Waltemate T, Sommer B, Botsch M (2014)
    Membrane Mapping: Combining Mesoscopic and Molecular Cell Visualization.
    In: Proceedings of Eurographics Workshop on Visual Computing for Biology and Medicine. Eurographics Association: 89-96.
    PUB | DOI
     
  • [15]
    2014 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2664837
    Sommer B (2014)
    Network Analysis and Integration in a Virtual Cell Environment.
    In: Approaches in Integrative Bioinformatics. Chen M, Hofestädt R (Eds); Berlin, Heidelberg: Springer Berlin Heidelberg: 275-297.
    PUB | DOI
     
  • [14]
    2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2661812
    Sommer B, Bender C, Hoppe T, Gamroth C, Jelonek L (2014)
    Stereoscopic cell visualization: from mesoscopic to molecular scale.
    Journal of Electronic Imaging 23(1): 11007.
    PUB | DOI | WoS
     
  • [13]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560817
    Sommer B, Kormeier B, Demenkov PS, Arrigo P, Hippe K, Ates Ö, Kochetov AV, Ivanisenko VA, Kolchanov NA, Hofestädt R (2013)
    Subcellular localization charts: a new visual methodology for the semi-automatic localization of protein-related data sets.
    Journal of Bioinformatics and Computational Biology 11(01): 1340005.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [12]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645319
    Lukat G, Krueger J, Sommer B (2013)
    APL@Voro: A Voronoi-Based Membrane Analysis Tool for GROMACS Trajectories.
    Journal Of Chemical Information And Modeling 53(11): 2908-2925.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [11]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2576375
    Sommer B (2013)
    Membrane Packing Problems: A short Review on computational Membrane Modeling Methods and Tools.
    Computational and Structural Biotechnology Journal 5(6): e201302014.
    PUB | DOI | PubMed | Europe PMC
     
  • [10]
    2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901699
    Hofestädt R, Kormeier B, Lange M, Schreiber F, Sommer B, Weise S (2013)
    Editorial: JIBtools - a Strategy to Reduce the Bioinformatics Analysis Gap.
    Journal of Integrative Bioinformatics 10(1): 226.
    PUB
     
  • [9]
    2012 | Bielefelder E-Dissertation | PUB-ID: 2557380 OA
    Sommer B (2012)
    CELLmicrocosmos - Integrative cell modeling at the  molecular, mesoscopic and functional level.
    Bielefeld: Bielefeld University.
    PUB | PDF
     
  • [8]
    2012 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2467408
    Rubert S, Gamroth C, Krüger J, Sommer B (2012)
    Grid Workflow Approach using the CELLmicrocosmos 2.2 MembraneEditor and UNICORE to commit and monitor GROMACS Jobs.
    In: CEUR Workshop Proceedings. Warzecha K-D, Packschies L (Eds);826. CEUR-WS.
    PUB | Download (ext.)
     
  • [7]
    2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2375173
    Sommer B, Dingersen T, Gamroth C, Heissmann AJ, Lukat G, Rotzoll R, Rubert S, Schäfer A, Krüger J (2011)
    Coarse-grained and all-atom MD simulations with Gromacs based on CELLmicrocosmos 2.2 model membranes (Conference Abstract).
    In: Journal of Cheminformatics. Journal of Cheminformatics, 3. Springer Science and Business Media LLC.
    PUB | DOI
     
  • [6]
    2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289773
    Sommer B, Dingersen T, Gamroth C, Schneider SE, Robert S, Krueger J, Dietz K-J (2011)
    CELLmicrocosmos 2.2 Membrane Editor: A Modular Interactive Shape-Based Software Approach To Solve Heterogeneous Membrane Packing Problems.
    Journal of Chemical Information and Modeling 51(5): 1165-1182.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [5]
    2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2374757
    Sommer B, Tiys ES, Kormeier B, Hippe K, Janowski SJ, Ivanisenko TV, Bragin AO, Arrigo P, Demenkov PS, Kochetov AV, Ivanisenko VA, Kolchanov NA, Hofestädt R (2010)
    Visualization and Analysis of a Cardio Vascular Disease-and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches.
    Journal of Integrative Bioinformatics 7(1): 148.
    PUB | DOI | PubMed | Europe PMC
     
  • [4]
    2010 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1785479 OA
    Sommer B, Dingersen T, Schneider S, Rubert S, Gamroth C (2010)
    CELLmicrocosmos 2.2: advancements and applications in modeling of three-dimensional PDB membranes (Conference Abstract).
    In: Journal of Cheminformatics. Journal of Cheminformatics, 2(Suppl 1):O21. Springer Science and Business Media LLC.
    PUB | PDF | DOI
     
  • [3]
    2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2002601
    Sommer B, Künsemöller J, Sand N, Husemann A, Rumming M, Kormeier B (2010)
    CELLMICROCOSMOS 4.1, An Interactive Approach to Integrating Spatially Localized Metabolic Networks into a Virtual 3D Cell Environment.
    Presented at the BIOINFORMATICS 2010, Valencia, Spain.
    PUB
     
  • [2]
    2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929144
    Sommer B (2010)
    Membranen für alle.
    NACHRICHTEN AUS DER CHEMIE 58(10): 1030-1032.
    PUB | DOI | WoS
     
  • [1]
    2009 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1785172 OA
    Sommer B, Dingersen T, Schneider S (2009)
    CELLmicrocosmos 2.1: a software approach for the modelling of three-dimensional PDB membranes (Conference Abstract).
    In: Chemistry Central Journal. Chemistry Central Journal, 3(Suppl 1):P72. Springer Science and Business Media LLC.
    PUB | PDF | DOI
     
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