27 Publikationen
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901345Mueller, S. C., Sommer, B., Backes, C., Haas, J., Meder, B., Meese, E., and Keller, A. (2016). From single variants to protein cascades multiscale modeling of single nucleotide variant sets in genetic disorders. Journal of Biological Chemistry 291, 1582-1590.PUB | DOI | WoS | PubMed | Europe PMC
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2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704602Biere, N., Doebbe, A., Rothe, N., Huser, T., Kruse, O., and Sommer, B. (2014). “Towards a 3D Cell Model of Chlamydomonas reinhardtii (Workshop Abstract)” in Proceedings of the CELLmicrocosmos neXt workshop, Sommer, B. ed. (Bielefeld: Bielefeld University), 9-10.PUB | PDF | DOI
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2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704619Wallmeyer, T., Sommer, B., and Kormeier, B. (2014). “Towards Pathway Prediction and Subcellular Localization by using FraMeTex (Workshop Abstract)” in Proceedings of the CELLmicrocosmos neXt workshop, Sommer, B. ed. (Bielefeld: Bielefeld University), 18-19.PUB | PDF | DOI
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2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704665Kovanci, G., and Sommer, B. (2014). “Towards a Web-based Visualization for the CELLmicrocosmos 4 PathwayIntegration (Workshop Abstract)” in Proceedings of the CELLmicrocosmos neXt workshop, Sommer, B. ed. (Bielefeld: Bielefeld University), 14-15.PUB | PDF | DOI
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2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704586Popik, O. V., Sommer, B., Hofestädt, R., and Ivanisenko, V. A. (2014). “Evaluation and Visualization of Pathway Efficiency based on Subcellular Protein Localizations (Workshop Abstract)” in Proceedings of the CELLmicrocosmos neXt workshop, Sommer, B. ed. (Bielefeld: Bielefeld University), 9-10.PUB | PDF | DOI
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2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704564Sommer, B., and Chen, M. (2014). “A novel Lecture Program in Bioinformatics: Interdisciplinary Cell Visualization and Modeling (Workshop Abstract)” in Proceedings of the CELLmicrocosmos neXt workshop, Sommer, B. ed. (Bielefeld), 20-21.PUB | PDF | DOI
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2710884Popik, O. V., Saik, O. V., Petrovskiy, E. D., Sommer, B., Hofestädt, R., Lavrik, I. N., and Ivanisenko, V. A. (2014). Analysis of signaling networks distributed over intracellular compartments based on protein-protein interactions. BMC Genomics 15:S7.PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
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2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2664859Lukat, G., Sommer, B., and Krüger, J. (2014). “Membrane simulation analysis using Voronoi tessellation (Conference Abstract)” in Journal of Cheminformatics Journal of Cheminformatics, vol. 6, (Springer Science and Business Media LLC).PUB | DOI
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2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2693254Waltemate, T., Sommer, B., and Botsch, M. (2014). “Membrane Mapping: Combining Mesoscopic and Molecular Cell Visualization” in Proceedings of Eurographics Workshop on Visual Computing for Biology and Medicine (Eurographics Association), 89-96.PUB | DOI
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560817Sommer, B., Kormeier, B., Demenkov, P. S., Arrigo, P., Hippe, K., Ates, Ö., Kochetov, A. V., Ivanisenko, V. A., Kolchanov, N. A., and Hofestädt, R. (2013). Subcellular localization charts: a new visual methodology for the semi-automatic localization of protein-related data sets. Journal of Bioinformatics and Computational Biology 11:1340005.PUB | DOI | WoS | PubMed | Europe PMC
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645319Lukat, G., Krueger, J., and Sommer, B. (2013). APL@Voro: A Voronoi-Based Membrane Analysis Tool for GROMACS Trajectories. Journal Of Chemical Information And Modeling 53, 2908-2925.PUB | DOI | WoS | PubMed | Europe PMC
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2576375Sommer, B. (2013). Membrane Packing Problems: A short Review on computational Membrane Modeling Methods and Tools. Computational and Structural Biotechnology Journal 5:e201302014.PUB | DOI | PubMed | Europe PMC
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901699Hofestädt, R., Kormeier, B., Lange, M., Schreiber, F., Sommer, B., and Weise, S. (2013). Editorial: JIBtools - a Strategy to Reduce the Bioinformatics Analysis Gap. Journal of Integrative Bioinformatics 10, 226.PUB
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2012 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2467408Rubert, S., Gamroth, C., Krüger, J., and Sommer, B. (2012). “Grid Workflow Approach using the CELLmicrocosmos 2.2 MembraneEditor and UNICORE to commit and monitor GROMACS Jobs” in CEUR Workshop Proceedings, Warzecha, K. - D., and Packschies, L. eds., vol. 826, (CEUR-WS).PUB | Download (ext.)
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2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2375173Sommer, B., Dingersen, T., Gamroth, C., Heissmann, A. J., Lukat, G., Rotzoll, R., Rubert, S., Schäfer, A., and Krüger, J. (2011). “Coarse-grained and all-atom MD simulations with Gromacs based on CELLmicrocosmos 2.2 model membranes (Conference Abstract)” in Journal of Cheminformatics Journal of Cheminformatics, vol. 3, (Springer Science and Business Media LLC).PUB | DOI
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289773Sommer, B., Dingersen, T., Gamroth, C., Schneider, S. E., Robert, S., Krueger, J., and Dietz, K. - J. (2011). CELLmicrocosmos 2.2 Membrane Editor: A Modular Interactive Shape-Based Software Approach To Solve Heterogeneous Membrane Packing Problems. Journal of Chemical Information and Modeling 51, 1165-1182.PUB | DOI | WoS | PubMed | Europe PMC
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2374757Sommer, B., Tiys, E. S., Kormeier, B., Hippe, K., Janowski, S. J., Ivanisenko, T. V., Bragin, A. O., Arrigo, P., Demenkov, P. S., Kochetov, A. V., et al. (2010). Visualization and Analysis of a Cardio Vascular Disease-and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches. Journal of Integrative Bioinformatics 7, 148.PUB | DOI | PubMed | Europe PMC
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2010 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1785479Sommer, B., Dingersen, T., Schneider, S., Rubert, S., and Gamroth, C. (2010). “CELLmicrocosmos 2.2: advancements and applications in modeling of three-dimensional PDB membranes (Conference Abstract)” in Journal of Cheminformatics Journal of Cheminformatics, vol. 2(Suppl 1):O21, (Springer Science and Business Media LLC).PUB | PDF | DOI
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2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2002601Sommer, B., Künsemöller, J., Sand, N., Husemann, A., Rumming, M., and Kormeier, B. (2010).“CELLMICROCOSMOS 4.1, An Interactive Approach to Integrating Spatially Localized Metabolic Networks into a Virtual 3D Cell Environment.”. Presented at the BIOINFORMATICS 2010, Valencia, Spain.PUB
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2009 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1785172Sommer, B., Dingersen, T., and Schneider, S. (2009). “CELLmicrocosmos 2.1: a software approach for the modelling of three-dimensional PDB membranes (Conference Abstract)” in Chemistry Central Journal Chemistry Central Journal, vol. 3(Suppl 1):P72, (Springer Science and Business Media LLC).PUB | PDF | DOI