PUB - Publikationen an der Universität Bielefeld

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• [27]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914424

  Sommer, B., & Schreiber, F. (2017). Integration and virtual reality exploration of biomedical data with CmPI and VANTED. IT-INFORMATION TECHNOLOGY, 59(4), 181-190. doi:10.1515/itit-2016-0030

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• [26]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901345

  Mueller, S. C., Sommer, B., Backes, C., Haas, J., Meder, B., Meese, E., & Keller, A. (2016). From single variants to protein cascades multiscale modeling of single nucleotide variant sets in genetic disorders. Journal of Biological Chemistry, 291(4), 1582-1590. doi:10.1074/jbc.M115.695247

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [25]
  

  2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704602

  Biere, N., Doebbe, A., Rothe, N., Huser, T., Kruse, O., & Sommer, B. (2014). Towards a 3D Cell Model of Chlamydomonas reinhardtii (Workshop Abstract). In B. Sommer (Ed.), Proceedings of the CELLmicrocosmos neXt workshop (pp. 9-10). Bielefeld: Bielefeld University. https://doi.org/10.2390/biecoll-next2014-2

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• [24]
  

  2014 | Konferenzband | Veröffentlicht | PUB-ID: 2704570

  Sommer B. (Ed.) (2014). Proceedings of CELLmicrocosmos neXt 2014. Bielefeld: Bielefeld University. https://doi.org/10.2390/biecoll-next2014-0

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• [23]
  

  2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704619

  Wallmeyer, T., Sommer, B., & Kormeier, B. (2014). Towards Pathway Prediction and Subcellular Localization by using FraMeTex (Workshop Abstract). In B. Sommer (Ed.), Proceedings of the CELLmicrocosmos neXt workshop (pp. 18-19). Bielefeld: Bielefeld University. https://doi.org/10.2390/biecoll-next2014-8

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• [22]
  

  2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704665

  Kovanci, G., & Sommer, B. (2014). Towards a Web-based Visualization for the CELLmicrocosmos 4 PathwayIntegration (Workshop Abstract). In B. Sommer (Ed.), Proceedings of the CELLmicrocosmos neXt workshop (pp. 14-15). Bielefeld: Bielefeld University. https://doi.org/10.2390/biecoll-next2014-6

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• [21]
  

  2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704586

  Popik, O. V., Sommer, B., Hofestädt, R., & Ivanisenko, V. A. (2014). Evaluation and Visualization of Pathway Efficiency based on Subcellular Protein Localizations (Workshop Abstract). In B. Sommer (Ed.), Proceedings of the CELLmicrocosmos neXt workshop (pp. 9-10). Bielefeld: Bielefeld University. https://doi.org/10.2390/biecoll-next2014-3

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• [20]
  

  2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704580

  Sommer, B. (2014). CELLmicrocosmos X (Workshop Abstract). In B. Sommer (Ed.), Proceedings of the CELLmicrocosmos neXt workshop (pp. 5-6). Bielefeld: Bielefeld University. https://doi.org/10.2390/biecoll-next2014-1

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• [19]
  

  2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704564

  Sommer, B., & Chen, M. (2014). A novel Lecture Program in Bioinformatics: Interdisciplinary Cell Visualization and Modeling (Workshop Abstract). In B. Sommer (Ed.), Proceedings of the CELLmicrocosmos neXt workshop (pp. 20-21). Bielefeld. https://doi.org/10.2390/biecoll-next2014-9

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• [18]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2710884

  Popik, O. V., Saik, O. V., Petrovskiy, E. D., Sommer, B., Hofestädt, R., Lavrik, I. N., & Ivanisenko, V. A. (2014). Analysis of signaling networks distributed over intracellular compartments based on protein-protein interactions. BMC Genomics, 15(Suppl 12), S7. doi:10.1186/1471-2164-15-S12-S7

  PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
   
• [17]
  

  2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2664859

  Lukat, G., Sommer, B., & Krüger, J. (2014). Membrane simulation analysis using Voronoi tessellation (Conference Abstract). Journal of Cheminformatics, Journal of Cheminformatics, 6 Springer Science and Business Media LLC. doi:10.1186/1758-2946-6-S1-O23

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• [16]
  

  2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2693254

  Waltemate, T., Sommer, B., & Botsch, M. (2014). Membrane Mapping: Combining Mesoscopic and Molecular Cell Visualization. Proceedings of Eurographics Workshop on Visual Computing for Biology and Medicine, 89-96. doi:10.2312/vcbm.20141187

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• [15]
  

  2014 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2664837

  Sommer, B. (2014). Network Analysis and Integration in a Virtual Cell Environment. In M. Chen & R. Hofestädt (Eds.), Approaches in Integrative Bioinformatics (pp. 275-297). Berlin, Heidelberg: Springer Berlin Heidelberg. doi:10.1007/978-3-642-41281-3_10

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• [14]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2661812

  Sommer, B., Bender, C., Hoppe, T., Gamroth, C., & Jelonek, L. (2014). Stereoscopic cell visualization: from mesoscopic to molecular scale. Journal of Electronic Imaging, 23(1), 11007. doi:10.1117/1.JEI.23.1.011007

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• [13]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560817

  Sommer, B., Kormeier, B., Demenkov, P. S., Arrigo, P., Hippe, K., Ates, Ö., Kochetov, A. V., et al. (2013). Subcellular localization charts: a new visual methodology for the semi-automatic localization of protein-related data sets. Journal of Bioinformatics and Computational Biology, 11(01), 1340005. https://doi.org/10.1142/S0219720013400052

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• [12]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645319

  Lukat, G., Krueger, J., & Sommer, B. (2013). APL@Voro: A Voronoi-Based Membrane Analysis Tool for GROMACS Trajectories. Journal Of Chemical Information And Modeling, 53(11), 2908-2925. doi:10.1021/ci400172g

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• [11]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2576375

  Sommer, B. (2013). Membrane Packing Problems: A short Review on computational Membrane Modeling Methods and Tools. Computational and Structural Biotechnology Journal, 5(6), e201302014. doi:10.5936/csbj.201302014

  PUB | DOI | PubMed | Europe PMC
   
• [10]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901699

  Hofestädt, R., Kormeier, B., Lange, M., Schreiber, F., Sommer, B., & Weise, S. (2013). Editorial: JIBtools - a Strategy to Reduce the Bioinformatics Analysis Gap. Journal of Integrative Bioinformatics, 10(1), 226.

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• [9]
  

  2012 | Bielefelder E-Dissertation | PUB-ID: 2557380

  Sommer, B. (2012). CELLmicrocosmos - Integrative cell modeling at the  molecular, mesoscopic and functional level. Bielefeld: Bielefeld University.

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• [8]
  

  2012 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2467408

  Rubert, S., Gamroth, C., Krüger, J., & Sommer, B. (2012). Grid Workflow Approach using the CELLmicrocosmos 2.2 MembraneEditor and UNICORE to commit and monitor GROMACS Jobs. In K. - D. Warzecha & L. Packschies (Eds.), CEUR Workshop Proceedings (Vol. 826). CEUR-WS.

  PUB | Download (ext.)
   
• [7]
  

  2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2375173

  Sommer, B., Dingersen, T., Gamroth, C., Heissmann, A. J., Lukat, G., Rotzoll, R., Rubert, S., et al. (2011). Coarse-grained and all-atom MD simulations with Gromacs based on CELLmicrocosmos 2.2 model membranes (Conference Abstract). Journal of Cheminformatics, Journal of Cheminformatics, 3 Springer Science and Business Media LLC. https://doi.org/10.1186/1758-2946-3-S1-P43

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• [6]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289773

  Sommer, B., Dingersen, T., Gamroth, C., Schneider, S. E., Robert, S., Krueger, J., & Dietz, K. - J. (2011). CELLmicrocosmos 2.2 Membrane Editor: A Modular Interactive Shape-Based Software Approach To Solve Heterogeneous Membrane Packing Problems. Journal of Chemical Information and Modeling, 51(5), 1165-1182. https://doi.org/10.1021/ci1003619

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• [5]
  

  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2374757

  Sommer, B., Tiys, E. S., Kormeier, B., Hippe, K., Janowski, S. J., Ivanisenko, T. V., Bragin, A. O., et al. (2010). Visualization and Analysis of a Cardio Vascular Disease-and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches. Journal of Integrative Bioinformatics, 7(1), 148. https://doi.org/10.2390/biecoll-jib-2010-148

  PUB | DOI | PubMed | Europe PMC
   
• [4]
  

  2010 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1785479

  Sommer, B., Dingersen, T., Schneider, S., Rubert, S., & Gamroth, C. (2010). CELLmicrocosmos 2.2: advancements and applications in modeling of three-dimensional PDB membranes (Conference Abstract). Journal of Cheminformatics, Journal of Cheminformatics, 2(Suppl 1):O21 Springer Science and Business Media LLC. https://doi.org/10.1186/1758-2946-2-S1-O21

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• [3]
  

  2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2002601

  Sommer, B., Künsemöller, J., Sand, N., Husemann, A., Rumming, M., & Kormeier, B. (2010). CELLMICROCOSMOS 4.1, An Interactive Approach to Integrating Spatially Localized Metabolic Networks into a Virtual 3D Cell Environment.. Presented at the BIOINFORMATICS 2010, Valencia, Spain.

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• [2]
  

  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929144

  Sommer, B. (2010). Membranen für alle. NACHRICHTEN AUS DER CHEMIE, 58(10), 1030-1032. https://doi.org/10.1002/nadc.201076279

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• [1]
  

  2009 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1785172

  Sommer, B., Dingersen, T., & Schneider, S. (2009). CELLmicrocosmos 2.1: a software approach for the modelling of three-dimensional PDB membranes (Conference Abstract). Chemistry Central Journal, Chemistry Central Journal, 3(Suppl 1):P72 Springer Science and Business Media LLC. https://doi.org/10.1186/1752-153X-3-S1-P72

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