PUB - Publikationen an der Universität Bielefeld

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• [27]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914424

  Sommer, B., Schreiber, F.: Integration and virtual reality exploration of biomedical data with CmPI and VANTED. IT-INFORMATION TECHNOLOGY. 59, 181-190 (2017).

  PUB | DOI | WoS
   
• [26]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901345

  Mueller, S.C., Sommer, B., Backes, C., Haas, J., Meder, B., Meese, E., Keller, A.: From single variants to protein cascades multiscale modeling of single nucleotide variant sets in genetic disorders. Journal of Biological Chemistry. 291, 1582-1590 (2016).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [25]
  

  2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704602

  Biere, N., Doebbe, A., Rothe, N., Huser, T., Kruse, O., Sommer, B.: Towards a 3D Cell Model of Chlamydomonas reinhardtii (Workshop Abstract). In: Sommer, B. (ed.) Proceedings of the CELLmicrocosmos neXt workshop. p. 9-10. Bielefeld University, Bielefeld (2014).

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• [24]
  

  2014 | Konferenzband | Veröffentlicht | PUB-ID: 2704570

  Sommer, B. ed: Proceedings of CELLmicrocosmos neXt 2014. Bielefeld University, Bielefeld (2014).

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• [23]
  

  2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704619

  Wallmeyer, T., Sommer, B., Kormeier, B.: Towards Pathway Prediction and Subcellular Localization by using FraMeTex (Workshop Abstract). In: Sommer, B. (ed.) Proceedings of the CELLmicrocosmos neXt workshop. p. 18-19. Bielefeld University, Bielefeld (2014).

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• [22]
  

  2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704665

  Kovanci, G., Sommer, B.: Towards a Web-based Visualization for the CELLmicrocosmos 4 PathwayIntegration (Workshop Abstract). In: Sommer, B. (ed.) Proceedings of the CELLmicrocosmos neXt workshop. p. 14-15. Bielefeld University, Bielefeld (2014).

  PUB | PDF | DOI
   
• [21]
  

  2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704586

  Popik, O.V., Sommer, B., Hofestädt, R., Ivanisenko, V.A.: Evaluation and Visualization of Pathway Efficiency based on Subcellular Protein Localizations (Workshop Abstract). In: Sommer, B. (ed.) Proceedings of the CELLmicrocosmos neXt workshop. p. 9-10. Bielefeld University, Bielefeld (2014).

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• [20]
  

  2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704580

  Sommer, B.: CELLmicrocosmos X (Workshop Abstract). In: Sommer, B. (ed.) Proceedings of the CELLmicrocosmos neXt workshop. p. 5-6. Bielefeld University, Bielefeld (2014).

  PUB | PDF | DOI
   
• [19]
  

  2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704564

  Sommer, B., Chen, M.: A novel Lecture Program in Bioinformatics: Interdisciplinary Cell Visualization and Modeling (Workshop Abstract). In: Sommer, B. (ed.) Proceedings of the CELLmicrocosmos neXt workshop. p. 20-21. Bielefeld (2014).

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• [18]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2710884

  Popik, O.V., Saik, O.V., Petrovskiy, E.D., Sommer, B., Hofestädt, R., Lavrik, I.N., Ivanisenko, V.A.: Analysis of signaling networks distributed over intracellular compartments based on protein-protein interactions. BMC Genomics. 15, : S7 (2014).

  PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
   
• [17]
  

  2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2664859

  Lukat, G., Sommer, B., Krüger, J.: Membrane simulation analysis using Voronoi tessellation (Conference Abstract). Journal of Cheminformatics. Journal of Cheminformatics. 6, Springer Science and Business Media LLC (2014).

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• [16]
  

  2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2693254

  Waltemate, T., Sommer, B., Botsch, M.: Membrane Mapping: Combining Mesoscopic and Molecular Cell Visualization. Proceedings of Eurographics Workshop on Visual Computing for Biology and Medicine. p. 89-96. Eurographics Association (2014).

  PUB | DOI
   
• [15]
  

  2014 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2664837

  Sommer, B.: Network Analysis and Integration in a Virtual Cell Environment. In: Chen, M. and Hofestädt, R. (eds.) Approaches in Integrative Bioinformatics. p. 275-297. Springer Berlin Heidelberg, Berlin, Heidelberg (2014).

  PUB | DOI
   
• [14]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2661812

  Sommer, B., Bender, C., Hoppe, T., Gamroth, C., Jelonek, L.: Stereoscopic cell visualization: from mesoscopic to molecular scale. Journal of Electronic Imaging. 23, : 11007 (2014).

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• [13]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560817

  Sommer, B., Kormeier, B., Demenkov, P.S., Arrigo, P., Hippe, K., Ates, Ö., Kochetov, A.V., Ivanisenko, V.A., Kolchanov, N.A., Hofestädt, R.: Subcellular localization charts: a new visual methodology for the semi-automatic localization of protein-related data sets. Journal of Bioinformatics and Computational Biology. 11, : 1340005 (2013).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [12]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2645319

  Lukat, G., Krueger, J., Sommer, B.: APL@Voro: A Voronoi-Based Membrane Analysis Tool for GROMACS Trajectories. Journal Of Chemical Information And Modeling. 53, 2908-2925 (2013).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [11]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2576375

  Sommer, B.: Membrane Packing Problems: A short Review on computational Membrane Modeling Methods and Tools. Computational and Structural Biotechnology Journal. 5, : e201302014 (2013).

  PUB | DOI | PubMed | Europe PMC
   
• [10]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901699

  Hofestädt, R., Kormeier, B., Lange, M., Schreiber, F., Sommer, B., Weise, S.: Editorial: JIBtools - a Strategy to Reduce the Bioinformatics Analysis Gap. Journal of Integrative Bioinformatics. 10, 226 (2013).

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• [9]
  

  2012 | Bielefelder E-Dissertation | PUB-ID: 2557380

  Sommer, B.: CELLmicrocosmos - Integrative cell modeling at the  molecular, mesoscopic and functional level. Bielefeld University, Bielefeld (2012).

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• [8]
  

  2012 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2467408

  Rubert, S., Gamroth, C., Krüger, J., Sommer, B.: Grid Workflow Approach using the CELLmicrocosmos 2.2 MembraneEditor and UNICORE to commit and monitor GROMACS Jobs. In: Warzecha, K.-D. and Packschies, L. (eds.) CEUR Workshop Proceedings. 826, CEUR-WS (2012).

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• [7]
  

  2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2375173

  Sommer, B., Dingersen, T., Gamroth, C., Heissmann, A.J., Lukat, G., Rotzoll, R., Rubert, S., Schäfer, A., Krüger, J.: Coarse-grained and all-atom MD simulations with Gromacs based on CELLmicrocosmos 2.2 model membranes (Conference Abstract). Journal of Cheminformatics. Journal of Cheminformatics. 3, Springer Science and Business Media LLC (2011).

  PUB | DOI
   
• [6]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289773

  Sommer, B., Dingersen, T., Gamroth, C., Schneider, S.E., Robert, S., Krueger, J., Dietz, K.-J.: CELLmicrocosmos 2.2 Membrane Editor: A Modular Interactive Shape-Based Software Approach To Solve Heterogeneous Membrane Packing Problems. Journal of Chemical Information and Modeling. 51, 1165-1182 (2011).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [5]
  

  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2374757

  Sommer, B., Tiys, E.S., Kormeier, B., Hippe, K., Janowski, S.J., Ivanisenko, T.V., Bragin, A.O., Arrigo, P., Demenkov, P.S., Kochetov, A.V., Ivanisenko, V.A., Kolchanov, N.A., Hofestädt, R.: Visualization and Analysis of a Cardio Vascular Disease-and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches. Journal of Integrative Bioinformatics. 7, 148 (2010).

  PUB | DOI | PubMed | Europe PMC
   
• [4]
  

  2010 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1785479

  Sommer, B., Dingersen, T., Schneider, S., Rubert, S., Gamroth, C.: CELLmicrocosmos 2.2: advancements and applications in modeling of three-dimensional PDB membranes (Conference Abstract). Journal of Cheminformatics. Journal of Cheminformatics. 2(Suppl 1):O21, Springer Science and Business Media LLC (2010).

  PUB | PDF | DOI
   
• [3]
  

  2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2002601

  Sommer, B., Künsemöller, J., Sand, N., Husemann, A., Rumming, M., Kormeier, B.: CELLMICROCOSMOS 4.1, An Interactive Approach to Integrating Spatially Localized Metabolic Networks into a Virtual 3D Cell Environment. Presented at the BIOINFORMATICS 2010, Valencia, Spain (2010).

  PUB
   
• [2]
  

  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929144

  Sommer, B.: Membranen für alle. NACHRICHTEN AUS DER CHEMIE. 58, 1030-1032 (2010).

  PUB | DOI | WoS
   
• [1]
  

  2009 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1785172

  Sommer, B., Dingersen, T., Schneider, S.: CELLmicrocosmos 2.1: a software approach for the modelling of three-dimensional PDB membranes (Conference Abstract). Chemistry Central Journal. Chemistry Central Journal. 3(Suppl 1):P72, Springer Science and Business Media LLC (2009).

  PUB | PDF | DOI