PUB - Publikationen an der Universität Bielefeld

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• [40]
  

  2025 | Preprint | Veröffentlicht | PUB-ID: 3001260

  Meuthen, Denis, Hoffman, Joseph, Kurtz, Joachim, Berthelsen, Ane Liv, Chakarov, Nayden, Chen, Rebecca, Coculla, Angelica, Gadau, Jürgen, Goßmann, Toni, Mühlenhaupt, Max, Chavarria-Pizarro, Tania, Rapp, Tim Maximilian, Sepers, Bernice, Vellnow, Nikolas, Xu, Shuqing, and Vendrami, David. “Exploring the interplay of epigenetics and individualization”. (2025).

  PUB | DOI
   
• [39]
  

  2024 | Preprint | Veröffentlicht | PUB-ID: 2999691

  Tehrani, Sahar Javaheri, Rezazadeh, Elham, Kakhki, Niloofar Alaei, Nourani, Leila, Ebadi, Vali, Karimi, Sahar, Karami, Mojtaba, Ashouri, Fatemeh, Sarshar, Asaad, Goßmann, Toni, and Aliabadian, Mansour. “DNA barcoding of passerine birds at an ornithological crossroad reveals significant East-West genetic lineage divergence”. bioRxiv (2024).

  PUB | DOI
   
• [38]
  

  2024 | Preprint | Veröffentlicht | PUB-ID: 2990328

  Wilcox, Justin Jon Schader, Foucault, Quentin, and Goßmann, Toni. “Identification of 5mC within heterogenous tissue using de-novo somatic mutations”. bioRxiv (2024).

  PUB | DOI
   
• [37]
  

  2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2987704

  Vellnow, Nikolas, Goßmann, Toni, and Waxman, David. “The pseudoentropy of allele frequency trajectories, the persistence of variation, and the effective population size”. BioSystems (2024): 105176.

  PUB | DOI
   
• [36]
  

  2023 | Preprint | Veröffentlicht | PUB-ID: 2981787

  Chen, Yu-Chi, Vendrami, David, Huber, Maximilian L, Handel, Luisa EY, Cooney, Christopher R, Hoffman, Joseph, and Goßmann, Toni. “Long-term selection on mitocoding genes buried in mammalian and avian nuclear genomes”. bioRxiv (2023).

  PUB | DOI | Download (ext.)
   
• [35]
  

  2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2964512

  Vendrami, David, Goßmann, Toni, Chakarov, Nayden, Paijmans, Anneke, Eyre-Walker, Adam, Forcada, Jaume, and Hoffman, Joseph. “Signatures of selection on mitonuclear integrated genes uncover hidden mitogenomic variation in fur seals”. Genome Biology and Evolution 14.7 (2022): evac104.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [34]
  

  2022 | Zeitschriftenaufsatz | Angenommen | PUB-ID: 2962125

  Goßmann, Toni, and Waxman, David. “Correcting bias in allele frequency estimates to an observation threshold: A Markov chain analysis”. Genome Biology and Evolution (Accepted).

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• [33]
  

  2022 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2965449

  Mavreas, K, Goßmann, Toni, and Waxman, D. “Loss and fixation of strongly favoured new variants: Understanding and extending Haldane's result via the Wright-Fisher model”. Biosystems (2022): 104759.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [32]
  

  2022 | Preprint | Veröffentlicht | PUB-ID: 2966301

  Ord, James, Goßmann, Toni, and Adrian-Kalchhauser, Irene. “High nucleotide diversity accompanies differential DNA methylation in naturally diverging populations”. bioRxiv (2022).

  PUB | DOI
   
• [31]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956086

  Junker, Nora, and Goßmann, Toni. “Adaptation-Driven Evolution of Sirtuin 1 (SIRT1), a Key Regulator of Metabolism and Aging, in Marmot Species”. Frontiers in Ecology and Evolution 9 (2021): 666564.

  PUB | PDF | DOI | WoS
   
• [30]
  

  2021 | Preprint | Veröffentlicht | PUB-ID: 2955065

  Krüger, Oliver, Anaya-Rojas, Jaime, Caspers, Barbara, Chakarov, Nayden, Elliott-Graves, Alkistis, Fricke, Claudia, Gadau, Jürgen, Goßmann, Toni, Hoffman, Joseph, Kaiser, Marie Isabel, Kaiser, Sylvia, Korsten, Peter, Krohs, Ulrich, Kurtz, Joachim, Langrock, Roland, Müller, Caroline, Peuß, Robert, Reinhold, Klaus, Richter, Helene, Sachser, Norbert, Schielzeth, Holger, Schmoll, Tim, Stanewsky, Ralf, Szekely, Tamas, Weissing, Franz J., Wittmann, Meike, and Xu, Shuqing. “Individualised niches: an integrative conceptual framework across behaviour, ecology, and evolution”. EcoEvoRxiv (2021).

  PUB | DOI
   
• [29]
  

  2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2955523

  Hildebrand, Falk, Goßmann, Toni, Frioux, Clemence, Ozkurt, Ezgi, Myers, Pernille Neve, Ferretti, Pamela, Kuhn, Michael, Bahram, Mohammad, Nielsen, Henrik Bjorn, and Bork, Peer. “Dispersal strategies shape persistence and evolution of human gut bacteria”. Cell host & microbe (2021).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [28]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953581

  Stromland, Oyvind, Kallio, Juha P, Pschibul, Annica, Skoge, Renate H, Hardardottir, Hulda M, Sverkeli, Lars J, Heinekamp, Thorsten, Kniemeyer, Olaf, Migaud, Marie, Makarov, Mikhail V, Goßmann, Toni, Brakhage, Axel A, and Ziegler, Mathias. “Author Correction: Discovery of fungal surface NADases predominantly present in pathogenic species.”. Nature communications 12.1 (2021): 2004.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [27]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953011

  Stromland, Oyvind, Kallio, Juha P, Pschibul, Annica, Skoge, Renate H, Hardardottir, Hulda M, Sverkeli, Lars J, Heinekamp, Thorsten, Kniemeyer, Olaf, Migaud, Marie, Makarov, Mikhail V, Goßmann, Toni, Brakhage, Axel A, and Ziegler, Mathias. “Discovery of fungal surface NADases predominantly present in pathogenic species.”. Nature communications 12.1 (2021): 1631.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [26]
  

  2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2942703

  Yusuf, Leeban, Heatley, Matthew C, Palmer, Joseph P G, Barton, Henry J, Cooney, Christopher R, and Goßmann, Toni. “Noncoding regions underpin avian bill shape diversification at macroevolutionary scales.”. Genome research 30.4 (2020): 553-565.

  PUB | DOI | WoS | PubMed | Europe PMC | Preprint
   
• [25]
  

  2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2941495

  Goßmann, Toni, and Ralser, Markus. “Marmota marmota.”. Trends in genetics : TIG (2020).

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [24]
  

  2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941285

  Kinsella, Cormac M., Ruiz-Ruano, Francisco J., Dion-Côté, Anne-Marie, Charles, Alexander J., Goßmann, Toni, Cabrero, Josefa, Kappei, Dennis, Hemmings, Nicola, Simons, Mirre J. P., Camacho, Juan Pedro M., Forstmeier, Wolfgang, and Suh, Alexander. “Programmed DNA elimination of germline development genes in songbirds”. Nature Communications 10.1 (2019): 5468.

  PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
   
• [23]
  

  2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936740

  Bockwoldt, Mathias, Houry, Dorothée, Niere, Marc, Goßmann, Toni, Reinartz, Ines, Schug, Alexander, Ziegler, Mathias, and Heiland, Ines. “Identification of evolutionary and kinetic drivers of NAD-dependent signaling”. Proceedings of the National Academy of Sciences 116.32 (2019): 15957-15966.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [22]
  

  2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935649

  Goßmann, Toni, Shanmugasundram, Achchuthan, Borno, Stefan, Duvaux, Ludovic, Lemaire, Christophe, Kuhl, Heiner, Klages, Sven, Roberts, Lee D, Schade, Sophia, Gostner, Johanna M, Hildebrand, Falk, Vowinckel, Jakob, Bichet, Coraline, Mulleder, Michael, Calvani, Enrica, Zelezniak, Aleksej, Griffin, Julian L, Bork, Peer, Allaine, Dominique, Cohas, Aurelie, Welch, John J, Timmermann, Bernd, and Ralser, Markus. “Ice-Age Climate Adaptations Trap the Alpine Marmot in a State of Low Genetic Diversity.”. Current biology : CB 29.10 (2019): 1712-1720.e7.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [21]
  

  2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941287

  Karr, Timothy L., Southern, Helen, Rosenow, Matthew A., Goßmann, Toni, and Snook, Rhonda R. “The Old and the New: Discovery Proteomics Identifies Putative Novel Seminal Fluid Proteins in Drosophila”. Molecular & Cellular Proteomics 18.Suppl. 1 (2019): S23-S33.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [20]
  

  2019 | Preprint | Veröffentlicht | PUB-ID: 2941286

  Yusuf, Leeban, Heatley, Matthew, Palmer, Joseph P.G., Barton, Henry J., Cooney, Christopher R., and Goßmann, Toni. “Non-coding rather than coding regions underpin avian bill shape diversification at macroevolutionary scales”. bioRxiv (2019).

  PUB | Preprint
   
• [19]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941289

  Afanasyeva, Arina, Bockwoldt, Mathias, Cooney, Christopher R., Heiland, Ines, and Goßmann, Toni. “Human long intrinsically disordered protein regions are frequent targets of positive selection”. Genome Research 28.7 (2018): 975-982.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [18]
  

  2018 | Preprint | Veröffentlicht | PUB-ID: 2941288

  Laine, Veronika N., Goßmann, Toni, van Oers, Kees, Visser, Marcel E., and Groenen, Martien A.M. “Exploring the unmapped DNA and RNA reads in a songbird genome”. bioRxiv (2018).

  PUB | Preprint
   
• [17]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941290

  Corcoran, Pádraic, Goßmann, Toni, Barton, Henry J, Slate, Jon, and Zeng, Kai. “Determinants of the Efficacy of Natural Selection on Coding and Noncoding Variability in Two Passerine Species”. Genome Biology and Evolution 9.11 (2017): 2987-3007.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [16]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941292

  Shafiey, Hassan, Goßmann, Toni, and Waxman, David. “Evolutionary control: Targeted change of allele frequencies in natural populations using externally directed evolution”. Journal of Theoretical Biology 419 (2017): 362-374.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [15]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941291

  Kappei, Dennis, Scheibe, Marion, Paszkowski-Rogacz, Maciej, Bluhm, Alina, Goßmann, Toni, Dietz, Sabrina, Dejung, Mario, Herlyn, Holger, Buchholz, Frank, Mann, Matthias, and Butter, Falk. “Phylointeractomics reconstructs functional evolution of protein binding”. Nature Communications 8.1 (2017): 14334.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [14]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941293

  Goßmann, Toni, Saleh, Dounia, Schmid, Marc W., Spence, Michael A., and Schmid, Karl J. “Transcriptomes of Plant Gametophytes Have a Higher Proportion of Rapidly Evolving and Young Genes than Sporophytes”. Molecular Biology and Evolution 33.7 (2016): 1669-1678.

  PUB | DOI | WoS | PubMed | Europe PMC | Preprint
   
• [13]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941294

  Zhao, Lei, Goßmann, Toni, and Waxman, David. “A modified Wright–Fisher model that incorporates N e : A variant of the standard model with increased biological realism and reduced computational complexity”. Journal of Theoretical Biology 393 (2016): 218-228.

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• [12]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941295

  Laine, Veronika N., Goßmann, Toni, Schachtschneider, Kyle M., Garroway, Colin J., Madsen, Ole, Verhoeven, Koen J. F., de Jager, Victor, Megens, Hendrik-Jan, Warren, Wesley C., Minx, Patrick, Crooijmans, Richard P. M. A., Corcoran, Pádraic, Sheldon, Ben C., Slate, Jon, Zeng, Kai, van Oers, Kees, Visser, Marcel E., and Groenen, Martien A. M. “Evolutionary signals of selection on cognition from the great tit genome and methylome”. Nature Communications 7.1 (2016): 10474.

  PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
   
• [11]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941299

  Goßmann, Toni, Waxman, David, and Eyre-Walker, Adam. “Fluctuating Selection Models and Mcdonald-Kreitman Type Analyses”. PLoS ONE 9.1 (2014): e84540.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [10]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941297

  Goßmann, Toni, Santure, Anna W., Sheldon, Ben C., Slate, Jon, and Zeng, Kai. “Highly Variable Recombinational Landscape Modulates Efficacy of Natural Selection in Birds”. Genome Biology and Evolution 6.8 (2014): 2061-2075.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [9]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941298

  Goßmann, Toni, and Ziegler, Mathias. “Sequence divergence and diversity suggests ongoing functional diversification of vertebrate NAD metabolism”. DNA Repair 23 (2014): 39-48.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [8]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941300

  Goßmann, Toni, Schmid, Marc W., Grossniklaus, Ueli, and Schmid, Karl J. “Selection-Driven Evolution of Sex-Biased Genes Is Consistent with Sexual Selection in Arabidopsis thaliana”. Molecular Biology and Evolution 31.3 (2013): 574-583.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [7]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941302

  Goßmann, Toni, Keightley, Peter D., and Eyre-Walker, Adam. “The Effect of Variation in the Effective Population Size on the Rate of Adaptive Molecular Evolution in Eukaryotes”. Genome Biology and Evolution 4.5 (2012): 658-667.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [6]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941301

  Goßmann, Toni, Ziegler, Mathias, Puntervoll, Pål, de Figueiredo, Luis F., Schuster, Stefan, and Heiland, Ines. “NAD+biosynthesis and salvage - a phylogenetic perspective”. FEBS Journal 279.18 (2012): 3355-3363.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [5]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941303

  de Figueiredo, Luis F., Goßmann, Toni, Ziegler, Mathias, and Schuster, Stefan. “Pathway analysis of NAD+ metabolism”. Biochemical Journal 439.2 (2011): 341-348.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [4]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941304

  Goßmann, Toni, and Schmid, Karl J. “Selection-Driven Divergence After Gene Duplication in Arabidopsis thaliana”. Journal of Molecular Evolution 73.3-4 (2011): 153-165.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [3]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941305

  Goßmann, Toni, Woolfit, Megan, and Eyre-Walker, Adam. “Quantifying the Variation in the Effective Population Size Within a Genome”. Genetics 189.4 (2011): 1389-1402.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [2]
  

  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941306

  Lau, Corinna, Dölle, Christian, Goßmann, Toni, Agledal, Line, Niere, Marc, and Ziegler, Mathias. “Isoform-specific Targeting and Interaction Domains in Human Nicotinamide Mononucleotide Adenylyltransferases”. Journal of Biological Chemistry 285.24 (2010): 18868-18876.

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• [1]
  

  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941307

  Goßmann, Toni, Song, B.-H., Windsor, A. J., Mitchell-Olds, T., Dixon, C. J., Kapralov, M. V., Filatov, D. A., and Eyre-Walker, A. “Genome Wide Analyses Reveal Little Evidence for Adaptive Evolution in Many Plant Species”. Molecular Biology and Evolution 27.8 (2010): 1822-1832.

  PUB | DOI | WoS | PubMed | Europe PMC