PUB - Publikationen an der Universität Bielefeld

Genetic signatures of adaptation revealed from transcriptome sequencing of Arctic and red foxes.
Kumar V, Kutschera VE, Nilsson MA, Janke A., BMC Genomics 16(), 2015
PMID: 26250829

Climate change, humans, and the extinction of the woolly mammoth.
Nogues-Bravo D, Rodriguez J, Hortal J, Batra P, Araujo MB., PLoS Biol. 6(4), 2008
PMID: 18384234

Faithful or not: direct and indirect effects of climate on extra-pair paternities in a population of Alpine marmots.
Bichet C, Allaine D, Sauzet S, Cohas A., Proc. Biol. Sci. 283(1845), 2016
PMID: 28003452

Decreasing litter size of marmots over time: a life history response to climate change?
Tafani M, Cohas A, Bonenfant C, Gaillard JM, Allaine D., Ecology 94(3), 2013
PMID: 23687884

Acclimatation et acclimatement de la Marmotte des Alpes, Marmota marmota (Linné 1758), dans les Pyrénées françaises
Couturier M.., 1955

Introduction de la marmotte dans les Pyrénées occidentales
Besson J.P.., 1971

A glimpse on the pattern of rodent diversification: a phylogenetic approach.
Fabre PH, Hautier L, Dimitrov D, Douzery EJ., BMC Evol. Biol. 12(), 2012
PMID: 22697210

Rodent phylogeny revised: analysis of six nuclear genes from all major rodent clades.
Blanga-Kanfi S, Miranda H, Penn O, Pupko T, DeBry RW, Huchon D., BMC Evol. Biol. 9(), 2009
PMID: 19341461

Molecular poltergeists: mitochondrial DNA copies (numts) in sequenced nuclear genomes.
Hazkani-Covo E, Zeller RM, Martin W., PLoS Genet. 6(2), 2010
PMID: 20168995

White adipose tissue fatty acids of Alpine marmots during their yearly cycle.
Cochet N, Georges B, Meister R, Florant GL, Barre H., Lipids 34(3), 1999
PMID: 10230722

The influence of dietary fatty acids on hibernation by golden-mantled ground squirrels (Spermophilus lateralis)
Frank C.L.., 1992

Bruns U., Frey-Roos F., Pudritz S., Tataruch F., Ruf T., Arnold W.., 2000

Hibernation induces immune changes in the lung of 13-lined ground squirrels (Ictidomys tridecemlineatus).
Bohr M, Brooks AR, Kurtz CC., Dev. Comp. Immunol. 47(2), 2014
PMID: 25046152

Genomic Flatlining in the Endangered Island Fox.
Robinson JA, Ortega-Del Vecchyo D, Fan Z, Kim BY, vonHoldt BM, Marsden CD, Lohmueller KE, Wayne RK., Curr. Biol. 26(9), 2016
PMID: 27112291

Runs of homozygosity: windows into population history and trait architecture.
Ceballos FC, Joshi PK, Clark DW, Ramsay M, Wilson JF., Nat. Rev. Genet. 19(4), 2018
PMID: 29335644

The evolution of marmot sociality: I. Why disperse late?
Arnold W.., 1990

Microsatellite analysis of genetic variation among and within Alpine marmot populations in the French Alps.
Goossens B, Chikhi L, Taberlet P, Waits LP, Allaine D., Mol. Ecol. 10(1), 2001
PMID: 11251786

Extra-pair paternity in the monogamous alpine marmot (Marmota marmota): the roles of social setting and female mate choice
Cohas A., Yoccoz N.G., Da A., Goossens B., Allainé D.., 2005

The causes and consequences of inbreeding avoidance and tolerance in cooperatively breeding vertebrates
Nichols H.J.., 2017

Alpine marmots in Austria. The present population structure as a result of the postglacial distribution history
Preleuthner M., Pinsker W., Kruckenhauser L., Miller W.J., Prosl H.., 1995

Microsatellite variation in autochthonous and introduced populations of the Alpine marmot (Marmota marmota) along a European west–east transect
Kruckenhauser L., Pinsker W.., 2004

Joint inference of the distribution of fitness effects of deleterious mutations and population demography based on nucleotide polymorphism frequencies.
Keightley PD, Eyre-Walker A., Genetics 177(4), 2007
PMID: 18073430

Comparative population genomics in animals uncovers the determinants of genetic diversity.
Romiguier J, Gayral P, Ballenghien M, Bernard A, Cahais V, Chenuil A, Chiari Y, Dernat R, Duret L, Faivre N, Loire E, Lourenco JM, Nabholz B, Roux C, Tsagkogeorga G, Weber AA, Weinert LA, Belkhir K, Bierne N, Glemin S, Galtier N., Nature 515(7526), 2014
PMID: 25141177

Historical biogeography and body form evolution of ground squirrels (Sciuridae: Xerinae)
Ge D.Y., Liu X., Lv X.F., Zhang Z.Q., Xia L., Yang Q.S.., 2013

PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals
Jones K.E., Bielby J., Cardillo M., Fritz S.A., O’Dell J., Orme C.D.L., Safi K., Sechrest W., Boakes E.H., Carbone C.., 2009

The fast-slow continuum in mammalian life history: an empirical reevaluation.
Bielby J, Mace GM, Bininda-Emonds OR, Cardillo M, Gittleman JL, Jones KE, Orme CD, Purvis A., Am. Nat. 169(6), 2007
PMID: 17479461

The periglacial expansion of marmots (Marmota) in Middle Europe during Late Pleistocene
Zimina R.P., Gerasimov I.P.., 1973

The IICR (inverse instantaneous coalescence rate) as a summary of genomic diversity: insights into demographic inference and model choice.
Chikhi L, Rodriguez W, Grusea S, Santos P, Boitard S, Mazet O., Heredity (Edinb) 120(1), 2017
PMID: 29234166

Inference of human population history from individual whole-genome sequences.
Li H, Durbin R., Nature 475(7357), 2011
PMID: 21753753

Effects of metapopulation processes on measures of genetic diversity.
Pannell JR, Charlesworth B., Philos. Trans. R. Soc. Lond., B, Biol. Sci. 355(1404), 2000
PMID: 11205346

Roach N.., 2017

The Saccharomyces cerevisiae W303-K6001 cross-platform genome sequence: insights into ancestry and physiology of a laboratory mutt.
Ralser M, Kuhl H, Ralser M, Werber M, Lehrach H, Breitenbach M, Timmermann B., Open Biol 2(8), 2012
PMID: 22977733

MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes.
Cantarel BL, Korf I, Robb SM, Parra G, Ross E, Moore B, Holt C, Sanchez Alvarado A, Yandell M., Genome Res. 18(1), 2007
PMID: 18025269

NextClip: an analysis and read preparation tool for Nextera Long Mate Pair libraries.
Leggett RM, Clavijo BJ, Clissold L, Clark MD, Caccamo M., Bioinformatics 30(4), 2013
PMID: 24297520

Characterization of the genome and transcriptome of the blue tit Cyanistes caeruleus: polymorphisms, sex-biased expression and selection signals.
Mueller JC, Kuhl H, Timmermann B, Kempenaers B., Mol Ecol Resour 16(2), 2015
PMID: 26220359

Adaptive seeds tame genomic sequence comparison.
Kielbasa SM, Wan R, Sato K, Horton P, Frith MC., Genome Res. 21(3), 2011
PMID: 21209072

Using the canary genome to decipher the evolution of hormone-sensitive gene regulation in seasonal singing birds.
Frankl-Vilches C, Kuhl H, Werber M, Klages S, Kerick M, Bakker A, de Oliveira EH, Reusch C, Capuano F, Vowinckel J, Leitner S, Ralser M, Timmermann B, Gahr M., Genome Biol. 16(), 2015
PMID: 25631560

Basic local alignment search tool.
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ., J. Mol. Biol. 215(3), 1990
PMID: 2231712

Genome-wide synteny through highly sensitive sequence alignment: Satsuma.
Grabherr MG, Russell P, Meyer M, Mauceli E, Alfoldi J, Di Palma F, Lindblad-Toh K., Bioinformatics 26(9), 2010
PMID: 20208069

Circos: an information aesthetic for comparative genomics.
Krzywinski M, Schein J, Birol I, Connors J, Gascoyne R, Horsman D, Jones SJ, Marra MA., Genome Res. 19(9), 2009
PMID: 19541911

Aligning multiple genomic sequences with the threaded blockset aligner.
Blanchette M, Kent WJ, Riemer C, Elnitski L, Smit AF, Roskin KM, Baertsch R, Rosenbloom K, Clawson H, Green ED, Haussler D, Miller W., Genome Res. 14(4), 2004
PMID: 15060014

FastTree 2--approximately maximum-likelihood trees for large alignments.
Price MN, Dehal PS, Arkin AP., PLoS ONE 5(3), 2010
PMID: 20224823

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions.
Kim D, Pertea G, Trapnell C, Pimentel H, Kelley R, Salzberg SL., Genome Biol. 14(4), 2013
PMID: 23618408

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks.
Trapnell C, Roberts A, Goff L, Pertea G, Kim D, Kelley DR, Pimentel H, Salzberg SL, Rinn JL, Pachter L., Nat Protoc 7(3), 2012
PMID: 22383036

Ensembl 2016.
Yates A, Akanni W, Amode MR, Barrell D, Billis K, Carvalho-Silva D, Cummins C, Clapham P, Fitzgerald S, Gil L, Giron CG, Gordon L, Hourlier T, Hunt SE, Janacek SH, Johnson N, Juettemann T, Keenan S, Lavidas I, Martin FJ, Maurel T, McLaren W, Murphy DN, Nag R, Nuhn M, Parker A, Patricio M, Pignatelli M, Rahtz M, Riat HS, Sheppard D, Taylor K, Thormann A, Vullo A, Wilder SP, Zadissa A, Birney E, Harrow J, Muffato M, Perry E, Ruffier M, Spudich G, Trevanion SJ, Cunningham F, Aken BL, Zerbino DR, Flicek P., Nucleic Acids Res. 44(D1), 2015
PMID: 26687719

UniProt: a hub for protein information.
UniProt Consortium, Bateman A, Martin MJ, O'Donovan C, Magrane M, Apweiler R, Alpi E, Antunes R, Arganiska J, Bely B, Bingley M, Bonilla C, Britto R, Bursteinas B, Chavali G, Cibrian-Uhalte E, Silva AD, De Giorgi M, Dogan T, Fazzini F, Gane P, Castro LG, Garmiri P, Hatton-Ellis E, Hieta R, Huntley R, Legge D, Liu W, Luo J, MacDougall A, Mutowo P, Nightingale A, Orchard S, Pichler K, Poggioli D, Pundir S, Pureza L, Qi G, Rosanoff S, Saidi R, Sawford T, Shypitsyna A, Turner E, Volynkin V, Wardell T, Watkins X, Zellner H, Cowley A, Figueira L, Li W, McWilliam H, Lopez R, Xenarios I, Bougueleret L, Bridge A, Poux S, Redaschi N, Aimo L, Argoud-Puy G, Auchincloss A, Axelsen K, Bansal P, Baratin D, Blatter MC, Boeckmann B, Bolleman J, Boutet E, Breuza L, Casal-Casas C, de Castro E, Coudert E, Cuche B, Doche M, Dornevil D, Duvaud S, Estreicher A, Famiglietti L, Feuermann M, Gasteiger E, Gehant S, Gerritsen V, Gos A, Gruaz-Gumowski N, Hinz U, Hulo C, Jungo F, Keller G, Lara V, Lemercier P, Lieberherr D, Lombardot T, Martin X, Masson P, Morgat A, Neto T, Nouspikel N, Paesano S, Pedruzzi I, Pilbout S, Pozzato M, Pruess M, Rivoire C, Roechert B, Schneider M, Sigrist C, Sonesson K, Staehli S, Stutz A, Sundaram S, Tognolli M, Verbregue L, Veuthey AL, Wu CH, Arighi CN, Arminski L, Chen C, Chen Y, Garavelli JS, Huang H, Laiho K, McGarvey P, Natale DA, Suzek BE, Vinayaka C, Wang Q, Wang Y, Yeh LS, Yerramalla MS, Zhang J., Nucleic Acids Res. 43(Database issue), 2014
PMID: 25348405

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation.
O'Leary NA, Wright MW, Brister JR, Ciufo S, Haddad D, McVeigh R, Rajput B, Robbertse B, Smith-White B, Ako-Adjei D, Astashyn A, Badretdin A, Bao Y, Blinkova O, Brover V, Chetvernin V, Choi J, Cox E, Ermolaeva O, Farrell CM, Goldfarb T, Gupta T, Haft D, Hatcher E, Hlavina W, Joardar VS, Kodali VK, Li W, Maglott D, Masterson P, McGarvey KM, Murphy MR, O'Neill K, Pujar S, Rangwala SH, Rausch D, Riddick LD, Schoch C, Shkeda A, Storz SS, Sun H, Thibaud-Nissen F, Tolstoy I, Tully RE, Vatsan AR, Wallin C, Webb D, Wu W, Landrum MJ, Kimchi A, Tatusova T, DiCuccio M, Kitts P, Murphy TD, Pruitt KD., Nucleic Acids Res. 44(D1), 2015
PMID: 26553804

Using native and syntenically mapped cDNA alignments to improve de novo gene finding.
Stanke M, Diekhans M, Baertsch R, Haussler D., Bioinformatics 24(5), 2008
PMID: 18218656

Gene finding in novel genomes.
Korf I., BMC Bioinformatics 5(), 2004
PMID: 15144565

A space-efficient and accurate method for mapping and aligning cDNA sequences onto genomic sequence.
Gotoh O., Nucleic Acids Res. 36(8), 2008
PMID: 18344523

Gene Ontology Consortium: going forward.
Gene Ontology Consortium, Blake JA, Christie KR, Dolan ME, Drabkin HJ, Hill DP, Ni L, Sitnikov D, Burgess S, Buza T, Gresham C, McCarthy F, Pillai L, Wang H, Carbon S, Dietze H, Lewis SE, Mungall CJ, Munoz-Torres MC, Feuermann M, Gaudet P, Basu S, Chisholm RL, Dodson RJ, Fey P, Mi H, Thomas PD, Muruganujan A, Poudel S, Hu JC, Aleksander SA, McIntosh BK, Renfro DP, Siegele DA, Attrill H, Brown NH, Tweedie S, Lomax J, Osumi-Sutherland D, Parkinson H, Roncaglia P, Lovering RC, Talmud PJ, Humphries SE, Denny P, Campbell NH, Foulger RE, Chibucos MC, Gwinn Giglio M, Chang HY, Finn R, Fraser M, Mitchell A, Nuka G, Pesseat S, Sangrador A, Scheremetjew M, Young SY, Stephan R, Harris MA, Oliver SG, Rutherford K, Wood V, Bahler J, Lock A, Kersey PJ, McDowall MD, Staines DM, Dwinell M, Shimoyama M, Laulederkind S, Hayman GT, Wang SJ, Petri V, D'Eustachio P, Matthews L, Balakrishnan R, Binkley G, Cherry JM, Costanzo MC, Demeter J, Dwight SS, Engel SR, Hitz BC, Inglis DO, Lloyd P, Miyasato SR, Paskov K, Roe G, Simison M, Nash RS, Skrzypek MS, Weng S, Wong ED, Berardini TZ, Li D, Huala E, Argasinska J, Arighi C, Auchincloss A, Axelsen K, Argoud-Puy G, Bateman A, Bely B, Blatter MC, Bonilla C, Bougueleret L, Boutet E, Breuza L, Bridge A, Britto R, Casals C, Cibrian-Uhalte E, Coudert E, Cusin I, Duek-Roggli P, Estreicher A, Famiglietti L, Gane P, Garmiri P, Gos A, Gruaz-Gumowski N, Hatton-Ellis E, Hinz U, Hulo C, Huntley R, Jungo F, Keller G, Laiho K, Lemercier P, Lieberherr D, MacDougall A, Magrane M, Martin M, Masson P, Mutowo P, O'Donovan C, Pedruzzi I, Pichler K, Poggioli D, Poux S, Rivoire C, Roechert B, Sawford T, Schneider M, Shypitsyna A, Stutz A, Sundaram S, Tognolli M, Wu C, Xenarios I, Chan J, Kishore R, Sternberg PW, Van Auken K, Muller HM, Done J, Li Y, Howe D, Westerfield M., Nucleic Acids Res. 43(Database issue), 2014
PMID: 25428369

InterProScan 5: genome-scale protein function classification.
Jones P, Binns D, Chang HY, Fraser M, Li W, McAnulla C, McWilliam H, Maslen J, Mitchell A, Nuka G, Pesseat S, Quinn AF, Sangrador-Vegas A, Scheremetjew M, Yong SY, Lopez R, Hunter S., Bioinformatics 30(9), 2014
PMID: 24451626

KEGG as a reference resource for gene and protein annotation.
Kanehisa M, Sato Y, Kawashima M, Furumichi M, Tanabe M., Nucleic Acids Res. 44(D1), 2015
PMID: 26476454

eggNOG v4.0: nested orthology inference across 3686 organisms.
Powell S, Forslund K, Szklarczyk D, Trachana K, Roth A, Huerta-Cepas J, Gabaldon T, Rattei T, Creevey C, Kuhn M, Jensen LJ, von Mering C, Bork P., Nucleic Acids Res. 42(Database issue), 2013
PMID: 24297252

The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs.
Schattner P, Brooks AN, Lowe TM., Nucleic Acids Res. 33(Web Server issue), 2005
PMID: 15980563

The complete mitochondrial genome of Daurian ground squirrel, Spermophilus dauricus.
Jin GY, Huang HJ, Zhang MH., Mitochondrial DNA A DNA Mapp Seq Anal 27(4), 2015
PMID: 26328762

MUSCLE: multiple sequence alignment with high accuracy and high throughput.
Edgar RC., Nucleic Acids Res. 32(5), 2004
PMID: 15034147

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.
Stamatakis A., Bioinformatics 30(9), 2014
PMID: 24451623

The effects of Cenozoic global change on squirrel phylogeny.
Mercer JM, Roth VL., Science 299(5612), 2003
PMID: 12595609

Generic revision in the Holarctic ground squirrel GenusSpermophilus
Helgen K.M., Russell F., Helgen L.E., Wilson D.E.., 2009

Nuclear DNA phylogeny of the squirrels (Mammalia: Rodentia) and the evolution of arboreality from c-myc and RAG1.
Steppan SJ, Storz BL, Hoffmann RS., Mol. Phylogenet. Evol. 30(3), 2004
PMID: 15012949

Accounting for alignment uncertainty in phylogenomics.
Wu M, Chatterji S, Eisen JA., PLoS ONE 7(1), 2012
PMID: 22272325

PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments.
Suyama M, Torrents D, Bork P., Nucleic Acids Res. 34(Web Server issue), 2006
PMID: 16845082

PAML: a program package for phylogenetic analysis by maximum likelihood.
Yang Z., Comput. Appl. Biosci. 13(5), 1997
PMID: 9367129

Controlling the false discovery rate: a practical and powerful approach to multiple testing
Benjamini Y., Hochberg Y.., 1995

WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013.
Wang J, Duncan D, Shi Z, Zhang B., Nucleic Acids Res. 41(Web Server issue), 2013
PMID: 23703215

The Sequence Alignment/Map format and SAMtools.
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R; 1000 Genome Project Data Processing Subgroup., Bioinformatics 25(16), 2009
PMID: 19505943

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3.
Cingolani P, Platts A, Wang le L, Coon M, Nguyen T, Wang L, Land SJ, Lu X, Ruden DM., Fly (Austin) 6(2), 2012
PMID: 22728672

STRING v10: protein-protein interaction networks, integrated over the tree of life.
Szklarczyk D, Franceschini A, Wyder S, Forslund K, Heller D, Huerta-Cepas J, Simonovic M, Roth A, Santos A, Tsafou KP, Kuhn M, Bork P, Jensen LJ, von Mering C., Nucleic Acids Res. 43(Database issue), 2014
PMID: 25352553

Fast and accurate short read alignment with Burrows-Wheeler transform.
Li H, Durbin R., Bioinformatics 25(14), 2009
PMID: 19451168

Fast gapped-read alignment with Bowtie 2.
Langmead B, Salzberg SL., Nat. Methods 9(4), 2012
PMID: 22388286

The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.
McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, Garimella K, Altshuler D, Gabriel S, Daly M, DePristo MA., Genome Res. 20(9), 2010
PMID: 20644199

The variant call format and VCFtools.
, Bioinformatics 27(15), 2011
PMID: 21653522

BCFtools/RoH: a hidden Markov model approach for detecting autozygosity from next-generation sequencing data.
Narasimhan V, Danecek P, Scally A, Xue Y, Tyler-Smith C, Durbin R., Bioinformatics 32(11), 2016
PMID: 26826718

BEDTools: a flexible suite of utilities for comparing genomic features.
Quinlan AR, Hall IM., Bioinformatics 26(6), 2010
PMID: 20110278

A 32-year demography of yellow-bellied marmots (Marmota flaviventris)
Schwartz O.A., Armitage K.B., Van D.., 1998

A framework for variation discovery and genotyping using next-generation DNA sequencing data.
DePristo MA, Banks E, Poplin R, Garimella KV, Maguire JR, Hartl C, Philippakis AA, del Angel G, Rivas MA, Hanna M, McKenna A, Fennell TJ, Kernytsky AM, Sivachenko AY, Cibulskis K, Gabriel SB, Altshuler D, Daly MJ., Nat. Genet. 43(5), 2011
PMID: 21478889

From FastQ data to high confidence variant calls: the Genome Analysis Toolkit best practices pipeline.
Van der Auwera GA, Carneiro MO, Hartl C, Poplin R, Del Angel G, Levy-Moonshine A, Jordan T, Shakir K, Roazen D, Thibault J, Banks E, Garimella KV, Altshuler D, Gabriel S, DePristo MA., Curr Protoc Bioinformatics 43(), 2013
PMID: 25431634

Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data.
Gutenkunst RN, Hernandez RD, Williamson SH, Bustamante CD., PLoS Genet. 5(10), 2009
PMID: 19851460

European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation.
Tine M, Kuhl H, Gagnaire PA, Louro B, Desmarais E, Martins RS, Hecht J, Knaust F, Belkhir K, Klages S, Dieterich R, Stueber K, Piferrer F, Guinand B, Bierne N, Volckaert FA, Bargelloni L, Power DM, Bonhomme F, Canario AV, Reinhardt R., Nat Commun 5(), 2014
PMID: 25534655

EggLib: processing, analysis and simulation tools for population genetics and genomics.
De Mita S, Siol M., BMC Genet. 13(), 2012
PMID: 22494792

Genetic Diversity and the Efficacy of Purifying Selection across Plant and Animal Species.
Chen J, Glemin S, Lascoux M., Mol. Biol. Evol. 34(6), 2017
PMID: 28333215

Genetic diversity-fitness correlation revealed by microsatellite analyses in European alpine marmots (Marmota marmota)
Silva A.D., Da A., Luikart G., Yoccoz N.G., Cohas A., Allainé D.., 2005

varver: a database of microsatellite variation in vertebrates.
Yashima AS, Innan H., Mol Ecol Resour 17(4), 2016
PMID: 27796069

The contrasting roles of PPARδ and PPARγ in regulating the metabolic switch between oxidation and storage of fats in white adipose tissue.
Roberts LD, Murray AJ, Menassa D, Ashmore T, Nicholls AW, Griffin JL., Genome Biol. 12(8), 2011
PMID: 21843327

Facing growth in the European Nucleotide Archive.
Cochrane G, Alako B, Amid C, Bower L, Cerdeno-Tarraga A, Cleland I, Gibson R, Goodgame N, Jang M, Kay S, Leinonen R, Lin X, Lopez R, McWilliam H, Oisel A, Pakseresht N, Pallreddy S, Park Y, Plaister S, Radhakrishnan R, Riviere S, Rossello M, Senf A, Silvester N, Smirnov D, Ten Hoopen P, Toribio A, Vaughan D, Zalunin V., Nucleic Acids Res. 41(Database issue), 2012
PMID: 23203883

The human genome browser at UCSC.
Kent WJ, Sugnet CW, Furey TS, Roskin KM, Pringle TH, Zahler AM, Haussler D., Genome Res. 12(6), 2002
PMID: 12045153

BLAT--the BLAST-like alignment tool.
Kent WJ., Genome Res. 12(4), 2002
PMID: 11932250