PUB - Publikationen an der Universität Bielefeld

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• [40]
  

  2025 | Preprint | Veröffentlicht | PUB-ID: 3001260

  Meuthen, D., Hoffman, J., Kurtz, J., Berthelsen, A.L., Chakarov, N., Chen, R., Coculla, A., Gadau, J., Goßmann, T., Mühlenhaupt, M., Chavarria-Pizarro, T., Rapp, T.M., Sepers, B., Vellnow, N., Xu, S. & Vendrami, D. (2025). Exploring the interplay of epigenetics and individualization. California Digital Library (CDL). doi:10.32942/X2Z34V.

  PUB | DOI
   
• [39]
  

  2024 | Preprint | Veröffentlicht | PUB-ID: 2999691

  Tehrani, S.J., Rezazadeh, E., Kakhki, N.A., Nourani, L., Ebadi, V., Karimi, S., Karami, M., Ashouri, F., Sarshar, A., Goßmann, T. & Aliabadian, M. (2024). DNA barcoding of passerine birds at an ornithological crossroad reveals significant East-West genetic lineage divergence. bioRxiv. Cold Spring Harbor Laboratory. doi:10.1101/2024.12.12.628090.

  PUB | DOI
   
• [38]
  

  2024 | Preprint | Veröffentlicht | PUB-ID: 2990328

  Wilcox, J.J.S., Foucault, Q. & Goßmann, T. (2024). Identification of 5mC within heterogenous tissue using de-novo somatic mutations. bioRxiv. Cold Spring Harbor Laboratory. doi:10.1101/2024.06.05.597613.

  PUB | DOI
   
• [37]
  

  2024 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2987704

  Vellnow, N., Goßmann, T. & Waxman, D. (2024). The pseudoentropy of allele frequency trajectories, the persistence of variation, and the effective population size. BioSystems: 105176. Elsevier BV. doi:10.1016/j.biosystems.2024.105176.

  PUB | DOI
   
• [36]
  

  2023 | Preprint | Veröffentlicht | PUB-ID: 2981787

  Chen, Y.-C., Vendrami, D., Huber, M.L., Handel, L.E.Y., Cooney, C.R., Hoffman, J. & Goßmann, T. (2023). Long-term selection on mitocoding genes buried in mammalian and avian nuclear genomes. bioRxiv. Cold Spring Harbor Laboratory. doi:10.1101/2023.08.07.552327.

  PUB | DOI | Download (ext.)
   
• [35]
  

  2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2964512

  Vendrami, D., Goßmann, T., Chakarov, N., Paijmans, A., Eyre-Walker, A., Forcada, J. & Hoffman, J. (2022). Signatures of selection on mitonuclear integrated genes uncover hidden mitogenomic variation in fur seals. Genome Biology and Evolution , 14(7): evac104. Oxford University Press. doi:10.1093/gbe/evac104.

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• [34]
  

  2022 | Zeitschriftenaufsatz | Angenommen | PUB-ID: 2962125

  Goßmann, T. & Waxman, D. (Accepted). Correcting bias in allele frequency estimates to an observation threshold: A Markov chain analysis. Genome Biology and Evolution. Oxford University Press (OUP). doi:10.1093/gbe/evac047.

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• [33]
  

  2022 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2965449

  Mavreas, K., Goßmann, T. & Waxman, D. (2022). Loss and fixation of strongly favoured new variants: Understanding and extending Haldane's result via the Wright-Fisher model. Biosystems: 104759. Elsevier. doi:10.1016/j.biosystems.2022.104759.

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• [32]
  

  2022 | Preprint | Veröffentlicht | PUB-ID: 2966301

  Ord, J., Goßmann, T. & Adrian-Kalchhauser, I. (2022). High nucleotide diversity accompanies differential DNA methylation in naturally diverging populations. bioRxiv. Cold Spring Harbor Laboratory. doi:10.1101/2022.10.08.511291.

  PUB | DOI
   
• [31]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956086

  Junker, N. & Goßmann, T. (2021). Adaptation-Driven Evolution of Sirtuin 1 (SIRT1), a Key Regulator of Metabolism and Aging, in Marmot Species. Frontiers in Ecology and Evolution, 9, 666564. Frontiers Media SA. doi:10.3389/fevo.2021.666564.

  PUB | PDF | DOI | WoS
   
• [30]
  

  2021 | Preprint | Veröffentlicht | PUB-ID: 2955065

  Krüger, O., Anaya-Rojas, J., Caspers, B., Chakarov, N., Elliott-Graves, A., Fricke, C., Gadau, J., Goßmann, T., Hoffman, J., Kaiser, M.I., Kaiser, S., Korsten, P., Krohs, U., Kurtz, J., Langrock, R., Müller, C., Peuß, R., Reinhold, K., Richter, H., Sachser, N., Schielzeth, H., Schmoll, T., Stanewsky, R., Szekely, T., Weissing, F.J., Wittmann, M. & Xu, S. (2021). Individualised niches: an integrative conceptual framework across behaviour, ecology, and evolution. EcoEvoRxiv. Center for Open Science. doi:10.32942/osf.io/7h5xq.

  PUB | DOI
   
• [29]
  

  2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2955523

  Hildebrand, F., Goßmann, T., Frioux, C., Ozkurt, E., Myers, P.N., Ferretti, P., Kuhn, M., Bahram, M., Nielsen, H.B. & Bork, P. (2021). Dispersal strategies shape persistence and evolution of human gut bacteria. Cell host & microbe. Cell Press. doi:10.1016/j.chom.2021.05.008.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [28]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953581

  Stromland, O., Kallio, J.P., Pschibul, A., Skoge, R.H., Hardardottir, H.M., Sverkeli, L.J., Heinekamp, T., Kniemeyer, O., Migaud, M., Makarov, M.V., Goßmann, T., Brakhage, A.A. & Ziegler, M. (2021). Author Correction: Discovery of fungal surface NADases predominantly present in pathogenic species. Nature communications, 12(1): 2004. Nature Publishing Group. doi:10.1038/s41467-021-22476-7.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [27]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2953011

  Stromland, O., Kallio, J.P., Pschibul, A., Skoge, R.H., Hardardottir, H.M., Sverkeli, L.J., Heinekamp, T., Kniemeyer, O., Migaud, M., Makarov, M.V., Goßmann, T., Brakhage, A.A. & Ziegler, M. (2021). Discovery of fungal surface NADases predominantly present in pathogenic species. Nature communications, 12(1): 1631. Nature Publishing Group. doi:10.1038/s41467-021-21307-z.

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• [26]
  

  2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2942703

  Yusuf, L., Heatley, M.C., Palmer, J.P.G., Barton, H.J., Cooney, C.R. & Goßmann, T. (2020). Noncoding regions underpin avian bill shape diversification at macroevolutionary scales. Genome research, 30(4), 553-565. Cold Spring Harbor Laboratory Press, HighWire Press. doi:10.1101/gr.255752.119.

  PUB | DOI | WoS | PubMed | Europe PMC | Preprint
   
• [25]
  

  2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2941495

  Goßmann, T. & Ralser, M. (2020). Marmota marmota. Trends in genetics : TIG. Elsevier. doi:10.1016/j.tig.2020.01.006.

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• [24]
  

  2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941285

  Kinsella, C.M., Ruiz-Ruano, F.J., Dion-Côté, A.-M., Charles, A.J., Goßmann, T., Cabrero, J., Kappei, D., Hemmings, N., Simons, M.J.P., Camacho, J.P.M., Forstmeier, W. & Suh, A. (2019). Programmed DNA elimination of germline development genes in songbirds. Nature Communications, 10(1): 5468. Springer Nature. doi:10.1038/s41467-019-13427-4.

  PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
   
• [23]
  

  2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936740

  Bockwoldt, M., Houry, D., Niere, M., Goßmann, T., Reinartz, I., Schug, A., Ziegler, M. & Heiland, I. (2019). Identification of evolutionary and kinetic drivers of NAD-dependent signaling. Proceedings of the National Academy of Sciences, 116(32), 15957-15966. Proceedings of the National Academy of Sciences. doi:10.1073/pnas.1902346116.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [22]
  

  2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935649

  Goßmann, T., Shanmugasundram, A., Borno, S., Duvaux, L., Lemaire, C., Kuhl, H., Klages, S., Roberts, L.D., Schade, S., Gostner, J.M., Hildebrand, F., Vowinckel, J., Bichet, C., Mulleder, M., Calvani, E., Zelezniak, A., Griffin, J.L., Bork, P., Allaine, D., Cohas, A., Welch, J.J., Timmermann, B. & Ralser, M. (2019). Ice-Age Climate Adaptations Trap the Alpine Marmot in a State of Low Genetic Diversity. Current biology : CB, 29(10), 1712-1720.e7. Elsevier. doi:10.1016/j.cub.2019.04.020.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [21]
  

  2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941287

  Karr, T.L., Southern, H., Rosenow, M.A., Goßmann, T. & Snook, R.R. (2019). The Old and the New: Discovery Proteomics Identifies Putative Novel Seminal Fluid Proteins in Drosophila. Molecular & Cellular Proteomics, 18(Suppl. 1), S23-S33. ASBMB . doi:10.1074/mcp.ra118.001098.

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• [20]
  

  2019 | Preprint | Veröffentlicht | PUB-ID: 2941286

  Yusuf, L., Heatley, M., Palmer, J.P.G., Barton, H.J., Cooney, C.R. & Goßmann, T. (2019). Non-coding rather than coding regions underpin avian bill shape diversification at macroevolutionary scales. bioRxiv.

  PUB | Preprint
   
• [19]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941289

  Afanasyeva, A., Bockwoldt, M., Cooney, C.R., Heiland, I. & Goßmann, T. (2018). Human long intrinsically disordered protein regions are frequent targets of positive selection. Genome Research, 28(7), 975-982. Cold Spring Harbor Laboratory Press. doi:10.1101/gr.232645.117.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [18]
  

  2018 | Preprint | Veröffentlicht | PUB-ID: 2941288

  Laine, V.N., Goßmann, T., van Oers, K., Visser, M.E. & Groenen, M.A.M. (2018). Exploring the unmapped DNA and RNA reads in a songbird genome. bioRxiv.

  PUB | Preprint
   
• [17]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941290

  Corcoran, P., Goßmann, T., Barton, H.J., Slate, J. & Zeng, K. (2017). Determinants of the Efficacy of Natural Selection on Coding and Noncoding Variability in Two Passerine Species. Genome Biology and Evolution, 9(11), 2987-3007. Oxford University Press. doi:10.1093/gbe/evx213.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [16]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941292

  Shafiey, H., Goßmann, T. & Waxman, D. (2017). Evolutionary control: Targeted change of allele frequencies in natural populations using externally directed evolution. Journal of Theoretical Biology, 419, 362-374. Elsevier. doi:10.1016/j.jtbi.2017.01.023.

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• [15]
  

  2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941291

  Kappei, D., Scheibe, M., Paszkowski-Rogacz, M., Bluhm, A., Goßmann, T., Dietz, S., Dejung, M., Herlyn, H., Buchholz, F., Mann, M. & Butter, F. (2017). Phylointeractomics reconstructs functional evolution of protein binding. Nature Communications, 8(1): 14334. Nature Publishing Group. doi:10.1038/ncomms14334.

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• [14]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941293

  Goßmann, T., Saleh, D., Schmid, M.W., Spence, M.A. & Schmid, K.J. (2016). Transcriptomes of Plant Gametophytes Have a Higher Proportion of Rapidly Evolving and Young Genes than Sporophytes. Molecular Biology and Evolution, 33(7), 1669-1678. Oxford University Press. doi:10.1093/molbev/msw044.

  PUB | DOI | WoS | PubMed | Europe PMC | Preprint
   
• [13]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941294

  Zhao, L., Goßmann, T. & Waxman, D. (2016). A modified Wright–Fisher model that incorporates N e : A variant of the standard model with increased biological realism and reduced computational complexity. Journal of Theoretical Biology, 393, 218-228. Elsevier. doi:10.1016/j.jtbi.2016.01.002.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [12]
  

  2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941295

  Laine, V.N., Goßmann, T., Schachtschneider, K.M., Garroway, C.J., Madsen, O., Verhoeven, K.J.F., de Jager, V., Megens, H.-J., Warren, W.C., Minx, P., Crooijmans, R.P.M.A., Corcoran, P., Sheldon, B.C., Slate, J., Zeng, K., van Oers, K., Visser, M.E. & Groenen, M.A.M. (2016). Evolutionary signals of selection on cognition from the great tit genome and methylome. Nature Communications, 7(1): 10474. Springer Nature. doi:10.1038/ncomms10474.

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• [11]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941299

  Goßmann, T., Waxman, D. & Eyre-Walker, A. (2014). Fluctuating Selection Models and Mcdonald-Kreitman Type Analyses. PLoS ONE, 9(1): e84540. Public Library of Science. doi:10.1371/journal.pone.0084540.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [10]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941297

  Goßmann, T., Santure, A.W., Sheldon, B.C., Slate, J. & Zeng, K. (2014). Highly Variable Recombinational Landscape Modulates Efficacy of Natural Selection in Birds. Genome Biology and Evolution, 6(8), 2061-2075. Oxford University Press. doi:10.1093/gbe/evu157.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [9]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941298

  Goßmann, T. & Ziegler, M. (2014). Sequence divergence and diversity suggests ongoing functional diversification of vertebrate NAD metabolism. DNA Repair, 23, 39-48. Elsevier. doi:10.1016/j.dnarep.2014.07.005.

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• [8]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941300

  Goßmann, T., Schmid, M.W., Grossniklaus, U. & Schmid, K.J. (2013). Selection-Driven Evolution of Sex-Biased Genes Is Consistent with Sexual Selection in Arabidopsis thaliana. Molecular Biology and Evolution, 31(3), 574-583. Oxford University Press. doi:10.1093/molbev/mst226.

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• [7]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941302

  Goßmann, T., Keightley, P.D. & Eyre-Walker, A. (2012). The Effect of Variation in the Effective Population Size on the Rate of Adaptive Molecular Evolution in Eukaryotes. Genome Biology and Evolution, 4(5), 658-667. Oxford University Press. doi:10.1093/gbe/evs027.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [6]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941301

  Goßmann, T., Ziegler, M., Puntervoll, P., de Figueiredo, L.F., Schuster, S. & Heiland, I. (2012). NAD+biosynthesis and salvage - a phylogenetic perspective. FEBS Journal, 279(18), 3355-3363. Wiley-Blackwell. doi:10.1111/j.1742-4658.2012.08559.x.

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• [5]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941303

  de Figueiredo, L.F., Goßmann, T., Ziegler, M. & Schuster, S. (2011). Pathway analysis of NAD+ metabolism. Biochemical Journal, 439(2), 341-348. Portland Press. doi:10.1042/bj20110320.

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• [4]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941304

  Goßmann, T. & Schmid, K.J. (2011). Selection-Driven Divergence After Gene Duplication in Arabidopsis thaliana. Journal of Molecular Evolution, 73(3-4), 153-165. Springer. doi:10.1007/s00239-011-9463-2.

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• [3]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941305

  Goßmann, T., Woolfit, M. & Eyre-Walker, A. (2011). Quantifying the Variation in the Effective Population Size Within a Genome. Genetics, 189(4), 1389-1402. Genetics Society of America. doi:10.1534/genetics.111.132654.

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• [2]
  

  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941306

  Lau, C., Dölle, C., Goßmann, T., Agledal, L., Niere, M. & Ziegler, M. (2010). Isoform-specific Targeting and Interaction Domains in Human Nicotinamide Mononucleotide Adenylyltransferases. Journal of Biological Chemistry, 285(24), 18868-18876. American Society for Biochemistry and Molecular Biology. doi:10.1074/jbc.m110.107631.

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• [1]
  

  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941307

  Goßmann, T., Song, B.-H., Windsor, A.J., Mitchell-Olds, T., Dixon, C.J., Kapralov, M.V., Filatov, D.A. & Eyre-Walker, A. (2010). Genome Wide Analyses Reveal Little Evidence for Adaptive Evolution in Many Plant Species. Molecular Biology and Evolution, 27(8), 1822-1832. Oxford University Press. doi:10.1093/molbev/msq079.

  PUB | DOI | WoS | PubMed | Europe PMC