18 Publikationen
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2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2983338
Efficient gene orthology inference via large-scale rearrangementsPUB | PDF | DOI | WoS | PubMed | Europe PMC
Rubert D, Dias Vieira Braga M (2023)
Algorithms for Molecular Biology 18(1): 14. -
2022 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2968237
Gene Orthology Inference via Large-Scale Rearrangements for Partially Assembled GenomesPUB | PDF | DOI | Download (ext.)
Rubert D, Dias Vieira Braga M (2022)
In: 22nd International Workshop on Algorithms in Bioinformatics (WABI 2022). Boucher C, Rahmann S (Eds); Leibniz International Proceedings in Informatics (LIPIcs), 242. Dagstuhl: Schloss Dagstuhl, Leibniz-Zentrum für Informatik. -
2022 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2965058
Algorithms for a Restricted Genome Median ProblemPUB | PDF | DOI | Download (ext.)
Silva HOM, Rubert D, Araujo E, Martinez FV (2022)
In: Anais do VII Encontro de Teoria da Computação (ETC 2022) = Proceedings of the 7th Theory of Computation Meeting . Bezerra Campêlo Neto M, Gomes Fernandes C, Fernandes dos Santos V (Eds); Porto Alegre, RS: Sociedade Brasileira de Computação - SBC: 45-48. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2954832
Natural family-free genomic distance.PUB | PDF | DOI | WoS | PubMed | Europe PMC
Rubert D, Martinez FV, Dias Vieira Braga M (2021)
Algorithms for molecular biology : AMB 16(1): 4. -
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2959611The potential of family-free rearrangements towards gene orthology inferencePUB | DOI | WoS | PubMed | Europe PMC
Rubert D, Doerr D, Dias Vieira Braga M (2021)
Journal of Bioinformatics and Computational Biology 19(6): 2140014. -
2021 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2965069
Algorithms for Normalized Multiple Sequence AlignmentsPUB | PDF | DOI | Download (ext.)
Araujo E, Rozante LC, Rubert D, Martinez FV (2021)
In: 32nd International Symposium on Algorithms and Computation (ISAAC 2021). Ahn H-K, Sadakane K (Eds); Leibniz International Proceedings in Informatics (LIPIcs), 212. Dagstuhl, Germany: Schloss Dagstuhl - Leibniz-Zentrum für Informatik: 40:1-40:16. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965062Scalable parallel algorithms for maximum matching and Hamiltonian circuit in convex bipartite graphsPUB | DOI | Download (ext.) | WoS
Stefanes MA, Rubert D, Soares J (2020)
Theoretical Computer Science 804: 58-71. -
2020 | Preprint | Veröffentlicht | PUB-ID: 2943670On motifs in colored graphsPUB | Download (ext.) | arXiv
Rubert D, Araujo E, Stefanes MA, Stoye J, Martinez FV (2020)
arXiv:2005.13634. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942995Searching and Inferring Colorful Topological Motifs in Vertex-Colored GraphsPUB | DOI | WoS
Rubert D, Araujo E, Stefanes MA, Stoye J, Martinez F (2020)
Journal of Combinatorial Optimization 40: 379–411. -
2020 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2965072
Natural Family-Free Genomic DistancePUB | PDF | DOI | Download (ext.)
Rubert D, Martinez FV, Dias Vieira Braga M (2020)
In: 20th International Workshop on Algorithms in Bioinformatics (WABI 2020). Kingsford C, Pisanti N (Eds); Leibniz International Proceedings in Informatics (LIPIcs), 172. Dagstuhl, Germany: Schloss Dagstuhl - Leibniz-Zentrum für Informatik: 3:1-3:23. -
2020 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2965061
Distance and Similarity Measures in Comparative GenomicsPUB | PDF | DOI | Download (ext.)
Rubert D, Stoye J, Martinez FHV (2020)
In: Anais do Concurso de Teses e Dissertações da SBC (CTD-SBC 2020) = Proceedings of the 33rd Thesis and Dissertation Contest . Avila Vecchiato D (Ed); Porto Alegre, RS: Sociedade Brasileira de Computação - SBC: 7-12. -
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937712
Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plantsPUB | PDF | DOI | WoS | PubMed | Europe PMC
Rubert D, Martinez FHV, Stoye J, Dörr D (2020)
BMC Genomics 21(Suppl. 2): 273. -
2019 | Datenpublikation | PUB-ID: 2936848
Supplementary Data for "Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants"PUB | Dateien verfügbar | DOI
Dörr D, Rubert D (2019)
Bielefeld University. -
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919006
Computing the family-free DCJ similarityPUB | PDF | DOI | WoS | PubMed | Europe PMC
Rubert D, Hoshino EA, Dias Vieira Braga M, Stoye J, Martinez FHV (2018)
BMC Bioinformatics 19(Suppl. 6): 152. -
2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2913015Algorithms for Computing the Family-Free Genomic Similarity under DCJPUB | DOI
Rubert D, Medeiros GL, Hoshino EA, Dias Vieira Braga M, Stoye J, Martinez FHV (2017)
In: Comparative Genomics. RECOMB-CG 2017. Meidanis J, Nakhleh L (Eds); Lecture Notes in Bioinformatics, 10562. Cham: Springer Verlag: 76-100. -
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909057
Approximating the DCJ distance of balanced genomes in linear timePUB | PDF | DOI | WoS | PubMed | Europe PMC
Rubert D, Feijão P, Dias Vieira Braga M, Stoye J, Martinez FHV (2017)
Algorithms for Molecular Biology 12(1): 3. -
2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2903708A Linear Time Approximation Algorithm for the DCJ Distance for Genomes with Bounded Number of DuplicatesPUB | DOI
Rubert D, Feijão P, Dias Vieira Braga M, Stoye J, Martinez FHV (2016)
In: Algorithms in Bioinformatics. WABI 2016. Frith M, Storm Pedersen CN (Eds); Lecture Notes in Bioinformatics, 9838. Cham: Springer: 293-306. -
2015 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2965063SIMBio: Searching and inferring colorful motifs in biological networksPUB | DOI | Download (ext.)
Rubert D, Araujo E, Stefanes MA (2015)
In: 2015 IEEE 15th International Conference on Bioinformatics and Bioengineering (BIBE). IEEE: 1-6.