18 Publikationen
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2022 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2968237
PUB | PDF | DOI | Download (ext.)Rubert, Diego, and Dias Vieira Braga, Marília. 2022. “Gene Orthology Inference via Large-Scale Rearrangements for Partially Assembled Genomes”. In 22nd International Workshop on Algorithms in Bioinformatics (WABI 2022), ed. Christina Boucher and Sven Rahmann. Vol. 242. Leibniz International Proceedings in Informatics (LIPIcs). Dagstuhl: Schloss Dagstuhl, Leibniz-Zentrum für Informatik: 24. -
2022 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2965058
PUB | PDF | DOI | Download (ext.)Silva, Helmuth O. M., Rubert, Diego, Araujo, Eloi, and Martinez, Fábio V. 2022. “Algorithms for a Restricted Genome Median Problem”. In Anais do VII Encontro de Teoria da Computação (ETC 2022) = Proceedings of the 7th Theory of Computation Meeting , ed. Manoel Bezerra Campêlo Neto, Cristina Gomes Fernandes, and Vinicius Fernandes dos Santos, 45-48. Porto Alegre, RS: Sociedade Brasileira de Computação - SBC.
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2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2959611PUB | DOI | WoS | PubMed | Europe PMCRubert, Diego, Doerr, Daniel, and Dias Vieira Braga, Marília. 2021. “The potential of family-free rearrangements towards gene orthology inference”. Journal of Bioinformatics and Computational Biology 19 (6): 2140014.
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2021 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2965069
PUB | PDF | DOI | Download (ext.)Araujo, Eloi, Rozante, Luiz C., Rubert, Diego, and Martinez, Fábio V. 2021. “Algorithms for Normalized Multiple Sequence Alignments”. In 32nd International Symposium on Algorithms and Computation (ISAAC 2021), ed. Hee-Kap Ahn and Kunihiko Sadakane, 212:40:1-40:16. Leibniz International Proceedings in Informatics (LIPIcs). Dagstuhl, Germany: Schloss Dagstuhl - Leibniz-Zentrum für Informatik.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965062PUB | DOI | Download (ext.) | WoSStefanes, Marco A., Rubert, Diego, and Soares, José. 2020. “Scalable parallel algorithms for maximum matching and Hamiltonian circuit in convex bipartite graphs”. Theoretical Computer Science 804: 58-71.
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2020 | Preprint | Veröffentlicht | PUB-ID: 2943670PUB | Download (ext.) | arXivRubert, Diego, Araujo, Eloi, Stefanes, Marco A., Stoye, Jens, and Martinez, Fábio V. 2020. “On motifs in colored graphs”. arXiv:2005.13634.
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2020 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2965072
PUB | PDF | DOI | Download (ext.)Rubert, Diego, Martinez, Fábio V., and Dias Vieira Braga, Marília. 2020. “Natural Family-Free Genomic Distance”. In 20th International Workshop on Algorithms in Bioinformatics (WABI 2020), ed. Carl Kingsford and Nadia Pisanti, 172:3:1-3:23. Leibniz International Proceedings in Informatics (LIPIcs). Dagstuhl, Germany: Schloss Dagstuhl - Leibniz-Zentrum für Informatik.
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2020 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2965061
PUB | PDF | DOI | Download (ext.)Rubert, Diego, Stoye, Jens, and Martinez, Fábio H. V. 2020. “Distance and Similarity Measures in Comparative Genomics”. In Anais do Concurso de Teses e Dissertações da SBC (CTD-SBC 2020) = Proceedings of the 33rd Thesis and Dissertation Contest , ed. Daniel Avila Vecchiato, 7-12. Porto Alegre, RS: Sociedade Brasileira de Computação - SBC.
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937712
PUB | PDF | DOI | WoS | PubMed | Europe PMCRubert, Diego, Martinez, Fábio Henrique Viduani, Stoye, Jens, and Dörr, Daniel. 2020. “Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants”. BMC Genomics 21 (Suppl. 2): 273.
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2019 | Datenpublikation | PUB-ID: 2936848
PUB | Dateien verfügbar | DOIDörr, Daniel, and Rubert, Diego. 2019. Supplementary Data for "Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants". Bielefeld University.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919006
PUB | PDF | DOI | WoS | PubMed | Europe PMCRubert, Diego, Hoshino, Edna A., Dias Vieira Braga, Marília, Stoye, Jens, and Martinez, Fábio Henrique Viduani. 2018. “Computing the family-free DCJ similarity”. BMC Bioinformatics 19 (Suppl. 6): 152.
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2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2913015PUB | DOIRubert, Diego, Medeiros, Gabriel L., Hoshino, Edna A., Dias Vieira Braga, Marília, Stoye, Jens, and Martinez, Fábio Henrique Viduani. 2017. “Algorithms for Computing the Family-Free Genomic Similarity under DCJ”. In Comparative Genomics. RECOMB-CG 2017, ed. Joao Meidanis and Luay Nakhleh, 10562:76-100. Lecture Notes in Bioinformatics. Cham: Springer Verlag.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909057
PUB | PDF | DOI | WoS | PubMed | Europe PMCRubert, Diego, Feijão, Pedro, Dias Vieira Braga, Marília, Stoye, Jens, and Martinez, Fábio Henrique Viduani. 2017. “Approximating the DCJ distance of balanced genomes in linear time”. Algorithms for Molecular Biology 12 (1): 3.
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2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2903708PUB | DOIRubert, Diego, Feijão, Pedro, Dias Vieira Braga, Marília, Stoye, Jens, and Martinez, Fábio Henrique Viduani. 2016. “A Linear Time Approximation Algorithm for the DCJ Distance for Genomes with Bounded Number of Duplicates”. In Algorithms in Bioinformatics. WABI 2016, ed. Martin Frith and Christian Nørgaard Storm Pedersen, 9838:293-306. Lecture Notes in Bioinformatics. Cham: Springer.
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2015 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2965063PUB | DOI | Download (ext.)Rubert, Diego, Araujo, Eloi, and Stefanes, Marco A. 2015. “SIMBio: Searching and inferring colorful motifs in biological networks”. In 2015 IEEE 15th International Conference on Bioinformatics and Bioengineering (BIBE), 1-6. IEEE.