Diego Rubert

drubert@cebitec.uni-bielefeld.de
PEVZ-ID
332097280

18 Publikationen

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  • [18]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2983338 OA
    Rubert D, Dias Vieira Braga M. Efficient gene orthology inference via large-scale rearrangements. Algorithms for Molecular Biology . 2023;18(1): 14.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [17]
    2022 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2968237 OA
    Rubert D, Dias Vieira Braga M. Gene Orthology Inference via Large-Scale Rearrangements for Partially Assembled Genomes. In: Boucher C, Rahmann S, eds. 22nd International Workshop on Algorithms in Bioinformatics (WABI 2022). Leibniz International Proceedings in Informatics (LIPIcs). Vol 242. Dagstuhl: Schloss Dagstuhl, Leibniz-Zentrum für Informatik; 2022.
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  • [16]
    2022 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2965058 OA
    Silva HOM, Rubert D, Araujo E, Martinez FV. Algorithms for a Restricted Genome Median Problem. In: Bezerra Campêlo Neto M, Gomes Fernandes C, Fernandes dos Santos V, eds. Anais do VII Encontro de Teoria da Computação (ETC 2022) = Proceedings of the 7th Theory of Computation Meeting . Porto Alegre, RS: Sociedade Brasileira de Computação - SBC; 2022: 45-48.
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  • [15]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2954832 OA
    Rubert D, Martinez FV, Dias Vieira Braga M. Natural family-free genomic distance. Algorithms for molecular biology : AMB. 2021;16(1): 4.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [14]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2959611
    Rubert D, Doerr D, Dias Vieira Braga M. The potential of family-free rearrangements towards gene orthology inference. Journal of Bioinformatics and Computational Biology. 2021;19(6): 2140014.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [13]
    2021 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2965069 OA
    Araujo E, Rozante LC, Rubert D, Martinez FV. Algorithms for Normalized Multiple Sequence Alignments. In: Ahn H-K, Sadakane K, eds. 32nd International Symposium on Algorithms and Computation (ISAAC 2021). Leibniz International Proceedings in Informatics (LIPIcs). Vol 212. Dagstuhl, Germany: Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2021: 40:1-40:16.
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  • [12]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965062
    Stefanes MA, Rubert D, Soares J. Scalable parallel algorithms for maximum matching and Hamiltonian circuit in convex bipartite graphs. Theoretical Computer Science. 2020;804:58-71.
    PUB | DOI | Download (ext.) | WoS
     
  • [11]
    2020 | Preprint | Veröffentlicht | PUB-ID: 2943670
    Rubert D, Araujo E, Stefanes MA, Stoye J, Martinez FV. On motifs in colored graphs. arXiv:2005.13634. 2020.
    PUB | Download (ext.) | arXiv
     
  • [10]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942995
    Rubert D, Araujo E, Stefanes MA, Stoye J, Martinez F. Searching and Inferring Colorful Topological Motifs in Vertex-Colored Graphs. Journal of Combinatorial Optimization. 2020;40:379–411.
    PUB | DOI | WoS
     
  • [9]
    2020 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2965072 OA
    Rubert D, Martinez FV, Dias Vieira Braga M. Natural Family-Free Genomic Distance. In: Kingsford C, Pisanti N, eds. 20th International Workshop on Algorithms in Bioinformatics (WABI 2020). Leibniz International Proceedings in Informatics (LIPIcs). Vol 172. Dagstuhl, Germany: Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2020: 3:1-3:23.
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  • [8]
    2020 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2965061 OA
    Rubert D, Stoye J, Martinez FHV. Distance and Similarity Measures in Comparative Genomics. In: Avila Vecchiato D, ed. Anais do Concurso de Teses e Dissertações da SBC (CTD-SBC 2020) = Proceedings of the 33rd Thesis and Dissertation Contest . Porto Alegre, RS: Sociedade Brasileira de Computação - SBC; 2020: 7-12.
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  • [7]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937712 OA
    Rubert D, Martinez FHV, Stoye J, Dörr D. Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants. BMC Genomics. 2020;21(Suppl. 2): 273.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [6]
    2019 | Datenpublikation | PUB-ID: 2936848 OA
    Dörr D, Rubert D. Supplementary Data for "Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants". Bielefeld University; 2019.
    PUB | Dateien verfügbar | DOI
     
  • [5]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919006 OA
    Rubert D, Hoshino EA, Dias Vieira Braga M, Stoye J, Martinez FHV. Computing the family-free DCJ similarity. BMC Bioinformatics. 2018;19(Suppl. 6): 152.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [4]
    2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2913015
    Rubert D, Medeiros GL, Hoshino EA, Dias Vieira Braga M, Stoye J, Martinez FHV. Algorithms for Computing the Family-Free Genomic Similarity under DCJ. In: Meidanis J, Nakhleh L, eds. Comparative Genomics. RECOMB-CG 2017. Lecture Notes in Bioinformatics. Vol 10562. Cham: Springer Verlag; 2017: 76-100.
    PUB | DOI
     
  • [3]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909057 OA
    Rubert D, Feijão P, Dias Vieira Braga M, Stoye J, Martinez FHV. Approximating the DCJ distance of balanced genomes in linear time. Algorithms for Molecular Biology. 2017;12(1): 3.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [2]
    2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2903708
    Rubert D, Feijão P, Dias Vieira Braga M, Stoye J, Martinez FHV. A Linear Time Approximation Algorithm for the DCJ Distance for Genomes with Bounded Number of Duplicates. In: Frith M, Storm Pedersen CN, eds. Algorithms in Bioinformatics. WABI 2016. Lecture Notes in Bioinformatics. Vol 9838. Cham: Springer; 2016: 293-306.
    PUB | DOI
     
  • [1]
    2015 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2965063
    Rubert D, Araujo E, Stefanes MA. SIMBio: Searching and inferring colorful motifs in biological networks. In: 2015 IEEE 15th International Conference on Bioinformatics and Bioengineering (BIBE). IEEE; 2015: 1-6.
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