Diego Rubert

drubert@cebitec.uni-bielefeld.de
PEVZ-ID
332097280

18 Publikationen

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  • [18]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2983338 OA
    Rubert D, Dias Vieira Braga M (2023)
    Efficient gene orthology inference via large-scale rearrangements.
    Algorithms for Molecular Biology 18(1): 14.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [17]
    2022 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2968237 OA
    Rubert D, Dias Vieira Braga M (2022)
    Gene Orthology Inference via Large-Scale Rearrangements for Partially Assembled Genomes.
    In: 22nd International Workshop on Algorithms in Bioinformatics (WABI 2022). Boucher C, Rahmann S (Eds); Leibniz International Proceedings in Informatics (LIPIcs), 242. Dagstuhl: Schloss Dagstuhl, Leibniz-Zentrum für Informatik.
    PUB | PDF | DOI | Download (ext.)
     
  • [16]
    2022 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2965058 OA
    Silva HOM, Rubert D, Araujo E, Martinez FV (2022)
    Algorithms for a Restricted Genome Median Problem.
    In: Anais do VII Encontro de Teoria da Computação (ETC 2022) = Proceedings of the 7th Theory of Computation Meeting . Bezerra Campêlo Neto M, Gomes Fernandes C, Fernandes dos Santos V (Eds); Porto Alegre, RS: Sociedade Brasileira de Computação - SBC: 45-48.
    PUB | PDF | DOI | Download (ext.)
     
  • [15]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2954832 OA
    Rubert D, Martinez FV, Dias Vieira Braga M (2021)
    Natural family-free genomic distance.
    Algorithms for molecular biology : AMB 16(1): 4.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [14]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2959611
    Rubert D, Doerr D, Dias Vieira Braga M (2021)
    The potential of family-free rearrangements towards gene orthology inference.
    Journal of Bioinformatics and Computational Biology 19(6): 2140014.
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [13]
    2021 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2965069 OA
    Araujo E, Rozante LC, Rubert D, Martinez FV (2021)
    Algorithms for Normalized Multiple Sequence Alignments.
    In: 32nd International Symposium on Algorithms and Computation (ISAAC 2021). Ahn H-K, Sadakane K (Eds); Leibniz International Proceedings in Informatics (LIPIcs), 212. Dagstuhl, Germany: Schloss Dagstuhl - Leibniz-Zentrum für Informatik: 40:1-40:16.
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  • [12]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2965062
    Stefanes MA, Rubert D, Soares J (2020)
    Scalable parallel algorithms for maximum matching and Hamiltonian circuit in convex bipartite graphs.
    Theoretical Computer Science 804: 58-71.
    PUB | DOI | Download (ext.) | WoS
     
  • [11]
    2020 | Preprint | Veröffentlicht | PUB-ID: 2943670
    Rubert D, Araujo E, Stefanes MA, Stoye J, Martinez FV (2020)
    On motifs in colored graphs.
    arXiv:2005.13634.
    PUB | Download (ext.) | arXiv
     
  • [10]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942995
    Rubert D, Araujo E, Stefanes MA, Stoye J, Martinez F (2020)
    Searching and Inferring Colorful Topological Motifs in Vertex-Colored Graphs.
    Journal of Combinatorial Optimization 40: 379–411.
    PUB | DOI | WoS
     
  • [9]
    2020 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2965072 OA
    Rubert D, Martinez FV, Dias Vieira Braga M (2020)
    Natural Family-Free Genomic Distance.
    In: 20th International Workshop on Algorithms in Bioinformatics (WABI 2020). Kingsford C, Pisanti N (Eds); Leibniz International Proceedings in Informatics (LIPIcs), 172. Dagstuhl, Germany: Schloss Dagstuhl - Leibniz-Zentrum für Informatik: 3:1-3:23.
    PUB | PDF | DOI | Download (ext.)
     
  • [8]
    2020 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2965061 OA
    Rubert D, Stoye J, Martinez FHV (2020)
    Distance and Similarity Measures in Comparative Genomics.
    In: Anais do Concurso de Teses e Dissertações da SBC (CTD-SBC 2020) = Proceedings of the 33rd Thesis and Dissertation Contest . Avila Vecchiato D (Ed); Porto Alegre, RS: Sociedade Brasileira de Computação - SBC: 7-12.
    PUB | PDF | DOI | Download (ext.)
     
  • [7]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937712 OA
    Rubert D, Martinez FHV, Stoye J, Dörr D (2020)
    Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants.
    BMC Genomics 21(Suppl. 2): 273.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [6]
    2019 | Datenpublikation | PUB-ID: 2936848 OA
    Dörr D, Rubert D (2019)
    Supplementary Data for "Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants".
    Bielefeld University.
    PUB | Dateien verfügbar | DOI
     
  • [5]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919006 OA
    Rubert D, Hoshino EA, Dias Vieira Braga M, Stoye J, Martinez FHV (2018)
    Computing the family-free DCJ similarity.
    BMC Bioinformatics 19(Suppl. 6): 152.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [4]
    2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2913015
    Rubert D, Medeiros GL, Hoshino EA, Dias Vieira Braga M, Stoye J, Martinez FHV (2017)
    Algorithms for Computing the Family-Free Genomic Similarity under DCJ.
    In: Comparative Genomics. RECOMB-CG 2017. Meidanis J, Nakhleh L (Eds); Lecture Notes in Bioinformatics, 10562. Cham: Springer Verlag: 76-100.
    PUB | DOI
     
  • [3]
    2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909057 OA
    Rubert D, Feijão P, Dias Vieira Braga M, Stoye J, Martinez FHV (2017)
    Approximating the DCJ distance of balanced genomes in linear time.
    Algorithms for Molecular Biology 12(1): 3.
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [2]
    2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2903708
    Rubert D, Feijão P, Dias Vieira Braga M, Stoye J, Martinez FHV (2016)
    A Linear Time Approximation Algorithm for the DCJ Distance for Genomes with Bounded Number of Duplicates.
    In: Algorithms in Bioinformatics. WABI 2016. Frith M, Storm Pedersen CN (Eds); Lecture Notes in Bioinformatics, 9838. Cham: Springer: 293-306.
    PUB | DOI
     
  • [1]
    2015 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2965063
    Rubert D, Araujo E, Stefanes MA (2015)
    SIMBio: Searching and inferring colorful motifs in biological networks.
    In: 2015 IEEE 15th International Conference on Bioinformatics and Bioengineering (BIBE). IEEE: 1-6.
    PUB | DOI | Download (ext.)
     
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