43 Publikationen

Alle markieren

[43]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943113
Varlociraptor: enhancing sensitivity and controlling false discovery rate in somatic indel discovery.
Koster J, Dijkstra LJ, Marschall T, Schönhuth A (2020)
Genome biology 21(1).
PUB | DOI | WoS | PubMed | Europe PMC
 
[42]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941677
MALVA: Genotyping by Mapping-free ALlele Detection of Known VAriants
Denti L, Previtali M, Bernardini G, Schönhuth A, Bonizzoni P (2019)
iScience 18: 20-27.
PUB | DOI | WoS | PubMed | Europe PMC
 
[41]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941754
Full-length de novo viral quasispecies assembly through variation graph construction
Baaijens JA, Van der Roest B, Köster J, Stougie L, Schönhuth A (2019)
Bioinformatics 35(24): 5086-5094.
PUB | DOI | WoS | PubMed | Europe PMC
 
[40]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941756
Using the structure of genome data in the design of deep neural networks for predicting amyotrophic lateral sclerosis from genotype
Yin B, Balvert M, van der Spek RAA, Dutilh BE, Bohté S, Veldink J, Schönhuth A (2019)
Bioinformatics 35(14): i538-i547.
PUB | DOI | WoS | PubMed | Europe PMC
 
[39]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941760
Automatic discovery of 100-miRNA signature for cancer classification using ensemble feature selection
Lopez-Rincon A, Martinez-Archundia M, Martinez-Ruiz GU, Schönhuth A, Tonda A (2019)
BMC Bioinformatics 20(1): 480.
PUB | DOI | WoS | PubMed | Europe PMC
 
[38]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941761
Overlap graph-based generation of haplotigs for diploids and polyploids
Baaijens JA, Schönhuth A (2019)
Bioinformatics 35(21): 4281-4289.
PUB | DOI | WoS | PubMed | Europe PMC
 
[37]
2019 | Preprint | Veröffentlicht | PUB-ID: 2941762
OGRE: Overlap Graph-based metagenomic Read clustEring
Balvert M, Hauptfeld T, Schönhuth A, Dutilh BE (2019)
bioRxiv.
PUB | bioRxiv
 
[36]
2019 | Preprint | Veröffentlicht | PUB-ID: 2941763
Strain-aware assembly of genomes from mixed samples using flow variation graphs
Baaijens JA, Stougie L, Schönhuth A (2019)
bioRxiv.
PUB | bioRxiv
 
[35]
2019 | Preprint | Veröffentlicht | PUB-ID: 2941764
12 Grand Challenges in Single-Cell Data Science
Laehnemann D, Köster J, Szczurek E, McCarthy DJ, Hicks SC, Robinson MD, Vallejos CA, Beerenwinkel N, Campbell KR, Mahfouz A, Pinello L, et al. (2019)
PeerJ.
PUB
 
[34]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941769
Bioinformatics Meets Virology: The European Virus Bioinformatics Center’s Second Annual Meeting
Ibrahim B, Arkhipova K, Andeweg A, Posada-Céspedes S, Enault F, Gruber A, Koonin E, Kupczok A, Lemey P, McHardy A, McMahon D, et al. (2018)
Viruses 10(5): 256.
PUB | DOI | WoS | PubMed | Europe PMC
 
[33]
2018 | Preprint | Veröffentlicht | PUB-ID: 2941767
Full-length de novo viral quasispecies assembly through variation graph construction
Baaijens JA, Van der Roest B, Köster J, Stougie L, Schönhuth A (2018)
bioRxiv.
PUB | bioRxiv
 
[32]
2018 | Preprint | Veröffentlicht | PUB-ID: 2941768
An image representation based convolutional network for DNA classification
Yin B, Balvert M, Zambrano D, Schönhuth A, Bohte S (2018)
arXiv:1806.04931.
PUB | arXiv
 
[31]
2018 | Preprint | Veröffentlicht | PUB-ID: 2941765
Dualities in Tree Representations
Chikhi R, Schönhuth A (2018)
arXiv:1804.04263.
PUB | arXiv
 
[30]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941784
De novo assembly of viral quasispecies using overlap graphs
Baaijens JA, Aabidine AZE, Rivals E, Schönhuth A (2017)
Genome Research 27(5): 835-848.
PUB | DOI | WoS | PubMed | Europe PMC
 
[29]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941785
A probabilistic model to recover individual genomes from metagenomes
Dröge J, Schönhuth A, McHardy AC (2017)
PeerJ Computer Science 3: e117.
PUB | DOI | WoS
 
[28]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941786
Genotyping inversions and tandem duplications
Ebler J, Schönhuth A, Marschall T (2017)
Bioinformatics 33(24): 4015-4023.
PUB | DOI | WoS | PubMed | Europe PMC
 
[27]
2017 | Preprint | Veröffentlicht | PUB-ID: 2941789 PUB | bioRxiv
 
[26]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941788
A framework for the detection of de novo mutations in family-based sequencing data
Francioli LC, Cretu-Stancu M, Garimella KV, Fromer M, Kloosterman WP, Samocha KE, Neale BM, Daly MJ, Banks E, DePristo MA, de Bakker PIW, et al. (2016)
European Journal of Human Genetics 25(2): 227-233.
PUB | DOI | WoS | PubMed | Europe PMC
 
[25]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941790
A high-quality human reference panel reveals the complexity and distribution of genomic structural variants
Hehir-Kwa JY, Marschall T, Kloosterman WP, Francioli LC, Baaijens JA, Dijkstra LJ, Abdellaoui A, Koval V, Thung DT, Wardenaar R, Renkens I, et al. (2016)
Nature Communications 7(1): 12989.
PUB | DOI | WoS | PubMed | Europe PMC
 
[24]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941793
Snowball: strain aware gene assembly of metagenomes
Gregor I, Schönhuth A, McHardy AC (2016)
Bioinformatics 32(17): i649-i657.
PUB | DOI | WoS | PubMed | Europe PMC
 
[23]
2016 | Preprint | Veröffentlicht | PUB-ID: 2941794
WhatsHap: fast and accurate read-based phasing
Martin M, Patterson M, Garg S, O Fischer S, Pisanti N, Klau GW, Schönhuth A, Marschall T (2016)
bioRxiv.
PUB | bioRxiv
 
[22]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941797
Characteristics of de novo structural changes in the human genome
Kloosterman WP, Francioli LC, Hormozdiari F, Marschall T, Hehir-Kwa JY, Abdellaoui A, Lameijer E-W, Moed MH, Koval V, Renkens I, van Roosmalen MJ, et al. (2015)
Genome Research 25(6): 792-801.
PUB | DOI | WoS | PubMed | Europe PMC
 
[21]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941798
SV-AUTOPILOT: optimized, automated construction of structural variation discovery and benchmarking pipelines
Leung WY, Marschall T, Paudel Y, Falquet L, Mei H, Schönhuth A, Maoz TY (2015)
BMC Genomics 16(1): 238.
PUB | DOI | WoS | PubMed | Europe PMC
 
[20]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941799
WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads
Patterson M, Marschall T, Pisanti N, van Iersel L, Stougie L, Klau GW, Schönhuth A (2015)
Journal of Computational Biology 22(6): 498-509.
PUB | DOI | WoS | PubMed | Europe PMC
 
[19]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941803
Population-specific genotype imputations using minimac or IMPUTE2
van Leeuwen EM, Kanterakis A, Deelen P, Kattenberg MV, Slagboom PE, de Bakker PIW, Wijmenga C, Swertz MA, Boomsma DI, van Duijn CM, Karssen LC, et al. (2015)
Nature Protocols 10(9): 1285-1296.
PUB | DOI | WoS | PubMed | Europe PMC
 
[18]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941804
Genome of the Netherlands population-specific imputations identify an ABCA6 variant associated with cholesterol levels
van Leeuwen EM, Karssen LC, Deelen J, Isaacs A, Medina-Gomez C, Mbarek H, Kanterakis A, Trompet S, Postmus I, Verweij N, van Enckevort DJ, et al. (2015)
Nature Communications 6(1): 6065.
PUB | DOI | WoS | PubMed | Europe PMC
 
[17]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941805
Genome-wide patterns and properties of de novo mutations in humans
Francioli LC, Polak PP, Koren A, Menelaou A, Chun S, Renkens I, van Duijn CM, Swertz M, Wijmenga C, van Ommen G, Slagboom PE, et al. (2015)
Nature Genetics 47(7): 822-826.
PUB | DOI | WoS | PubMed | Europe PMC
 
[16]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941807
Leveraging Distant Relatedness to Quantify Human Mutation and Gene-Conversion Rates
Palamara P F, Francioli L C, Wilton P R, Genovese G, Gusev A, Finucane H K, Sankararaman S, Sunyaev S R, de Bakker P IW, Wakeley J, Pe’er I, et al. (2015)
The American Journal of Human Genetics 97(6): 775-789.
PUB | DOI | WoS | PubMed | Europe PMC
 
[15]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764612 OA
Repeat- and error-aware comparison of deletions
Wittler R, Marschall T, Schönhuth A, Makinen V (2015)
Bioinformatics 31(18): 2947-2954.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[14]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941795
Genome sequence analysis with MonetDB
Cijvat R, Manegold S, Kersten M, Klau GW, Schönhuth A, Marschall T, Zhang Y (2015)
Datenbank-Spektrum 15(3): 185-191.
PUB | DOI
 
[13]
2015 | Preprint | PUB-ID: 2941808
On Hidden States in Quantum Random Walks
Faigle U, Schönhuth A (2015)
arXiv:1601.02882.
PUB | arXiv
 
[12]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941810
Viral Quasispecies Assembly via Maximal Clique Enumeration
Töpfer A, Marschall T, Bull RA, Luciani F, Schönhuth A, Beerenwinkel N (2014)
PLoS Computational Biology 10(3): e1003515.
PUB | DOI | WoS | PubMed | Europe PMC
 
[11]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941816
Improved imputation quality of low-frequency and rare variants in European samples using the ‘Genome of The Netherlands’
Deelen P, Menelaou A, van Leeuwen EM, Kanterakis A, van Dijk F, Medina-Gomez C, Francioli LC, Hottenga JJ, Karssen LC, Estrada K, Kreiner-Møller E, et al. (2014)
European Journal of Human Genetics 22(11): 1321-1326.
PUB | DOI | WoS | PubMed | Europe PMC
 
[10]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941835
Mapping proteins in the presence of paralogs using units of coevolution
El-Kebir M, Marschall T, Wohlers I, Patterson M, Heringa J, Schönhuth A, Klau GW (2013)
BMC Bioinformatics 14(S15): S18.
PUB | DOI | WoS | PubMed | Europe PMC
 
[9]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941836
MATE-CLEVER: Mendelian-inheritance-aware discovery and genotyping of midsize and long indels
Marschall T, Hajirasouliha I, Schönhuth A (2013)
Bioinformatics 29(24): 3143-3150.
PUB | DOI | WoS | PubMed | Europe PMC
 
[8]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941837
Discovering motifs that induce sequencing errors
Allhoff M, Schönhuth A, Martin M, Costa IG, Rahmann S, Marschall T (2013)
BMC Bioinformatics 14(Suppl 5): S1.
PUB | DOI | WoS | PubMed | Europe PMC
 
[7]
2013 | Preprint | Veröffentlicht | PUB-ID: 2941838
Sensitive Long-Indel-Aware Alignment of Sequencing Reads
Marschall T, Schönhuth A (2013)
arXiv:1303.3520.
PUB | arXiv
 
[6]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941839
CLEVER: clique-enumerating variant finder
Marschall T, Costa IG, Canzar S, Bauer M, Klau GW, Schliep A, Schönhuth A (2012)
Bioinformatics 28(22): 2875-2882.
PUB | DOI | WoS | PubMed | Europe PMC
 
[5]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941840
Mirroring co-evolving trees in the light of their topologies
Hajirasouliha I, Schönhuth A, de Juan D, Valencia A, Sahinalp SC (2012)
Bioinformatics 28(9): 1202-1208.
PUB | DOI | WoS | PubMed | Europe PMC
 
[4]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941841
Determining Coding CpG Islands by Identifying Regions Significant for Pattern Statistics on Markov Chains
Singer M, Engström A, Schönhuth A, Pachter L (2011)
Statistical Applications in Genetics and Molecular Biology 10(1): 759.
PUB | DOI | WoS | PubMed | Europe PMC
 
[3]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941842
Classifying short gene expression time-courses with Bayesian estimation of piecewise constant functions
Hafemeister C, Costa IG, Schönhuth A, Schliep A (2011)
Bioinformatics 27(7): 946-952.
PUB | DOI | WoS | PubMed | Europe PMC
 
[2]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941814
Generic identification of binary-valued hidden Markov processes
Schönhuth A (2011)
Journal of Algebraic Statistics 5(1): 72-99.
PUB
 
[1]
2010 | Preprint | Veröffentlicht | PUB-ID: 2941843 PUB | arXiv
 

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43 Publikationen

Alle markieren

[43]
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2943113
Varlociraptor: enhancing sensitivity and controlling false discovery rate in somatic indel discovery.
Koster J, Dijkstra LJ, Marschall T, Schönhuth A (2020)
Genome biology 21(1).
PUB | DOI | WoS | PubMed | Europe PMC
 
[42]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941677
MALVA: Genotyping by Mapping-free ALlele Detection of Known VAriants
Denti L, Previtali M, Bernardini G, Schönhuth A, Bonizzoni P (2019)
iScience 18: 20-27.
PUB | DOI | WoS | PubMed | Europe PMC
 
[41]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941754
Full-length de novo viral quasispecies assembly through variation graph construction
Baaijens JA, Van der Roest B, Köster J, Stougie L, Schönhuth A (2019)
Bioinformatics 35(24): 5086-5094.
PUB | DOI | WoS | PubMed | Europe PMC
 
[40]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941756
Using the structure of genome data in the design of deep neural networks for predicting amyotrophic lateral sclerosis from genotype
Yin B, Balvert M, van der Spek RAA, Dutilh BE, Bohté S, Veldink J, Schönhuth A (2019)
Bioinformatics 35(14): i538-i547.
PUB | DOI | WoS | PubMed | Europe PMC
 
[39]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941760
Automatic discovery of 100-miRNA signature for cancer classification using ensemble feature selection
Lopez-Rincon A, Martinez-Archundia M, Martinez-Ruiz GU, Schönhuth A, Tonda A (2019)
BMC Bioinformatics 20(1): 480.
PUB | DOI | WoS | PubMed | Europe PMC
 
[38]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941761
Overlap graph-based generation of haplotigs for diploids and polyploids
Baaijens JA, Schönhuth A (2019)
Bioinformatics 35(21): 4281-4289.
PUB | DOI | WoS | PubMed | Europe PMC
 
[37]
2019 | Preprint | Veröffentlicht | PUB-ID: 2941762
OGRE: Overlap Graph-based metagenomic Read clustEring
Balvert M, Hauptfeld T, Schönhuth A, Dutilh BE (2019)
bioRxiv.
PUB | bioRxiv
 
[36]
2019 | Preprint | Veröffentlicht | PUB-ID: 2941763
Strain-aware assembly of genomes from mixed samples using flow variation graphs
Baaijens JA, Stougie L, Schönhuth A (2019)
bioRxiv.
PUB | bioRxiv
 
[35]
2019 | Preprint | Veröffentlicht | PUB-ID: 2941764
12 Grand Challenges in Single-Cell Data Science
Laehnemann D, Köster J, Szczurek E, McCarthy DJ, Hicks SC, Robinson MD, Vallejos CA, Beerenwinkel N, Campbell KR, Mahfouz A, Pinello L, et al. (2019)
PeerJ.
PUB
 
[34]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941769
Bioinformatics Meets Virology: The European Virus Bioinformatics Center’s Second Annual Meeting
Ibrahim B, Arkhipova K, Andeweg A, Posada-Céspedes S, Enault F, Gruber A, Koonin E, Kupczok A, Lemey P, McHardy A, McMahon D, et al. (2018)
Viruses 10(5): 256.
PUB | DOI | WoS | PubMed | Europe PMC
 
[33]
2018 | Preprint | Veröffentlicht | PUB-ID: 2941767
Full-length de novo viral quasispecies assembly through variation graph construction
Baaijens JA, Van der Roest B, Köster J, Stougie L, Schönhuth A (2018)
bioRxiv.
PUB | bioRxiv
 
[32]
2018 | Preprint | Veröffentlicht | PUB-ID: 2941768
An image representation based convolutional network for DNA classification
Yin B, Balvert M, Zambrano D, Schönhuth A, Bohte S (2018)
arXiv:1806.04931.
PUB | arXiv
 
[31]
2018 | Preprint | Veröffentlicht | PUB-ID: 2941765
Dualities in Tree Representations
Chikhi R, Schönhuth A (2018)
arXiv:1804.04263.
PUB | arXiv
 
[30]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941784
De novo assembly of viral quasispecies using overlap graphs
Baaijens JA, Aabidine AZE, Rivals E, Schönhuth A (2017)
Genome Research 27(5): 835-848.
PUB | DOI | WoS | PubMed | Europe PMC
 
[29]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941785
A probabilistic model to recover individual genomes from metagenomes
Dröge J, Schönhuth A, McHardy AC (2017)
PeerJ Computer Science 3: e117.
PUB | DOI | WoS
 
[28]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941786
Genotyping inversions and tandem duplications
Ebler J, Schönhuth A, Marschall T (2017)
Bioinformatics 33(24): 4015-4023.
PUB | DOI | WoS | PubMed | Europe PMC
 
[27]
2017 | Preprint | Veröffentlicht | PUB-ID: 2941789 PUB | bioRxiv
 
[26]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941788
A framework for the detection of de novo mutations in family-based sequencing data
Francioli LC, Cretu-Stancu M, Garimella KV, Fromer M, Kloosterman WP, Samocha KE, Neale BM, Daly MJ, Banks E, DePristo MA, de Bakker PIW, et al. (2016)
European Journal of Human Genetics 25(2): 227-233.
PUB | DOI | WoS | PubMed | Europe PMC
 
[25]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941790
A high-quality human reference panel reveals the complexity and distribution of genomic structural variants
Hehir-Kwa JY, Marschall T, Kloosterman WP, Francioli LC, Baaijens JA, Dijkstra LJ, Abdellaoui A, Koval V, Thung DT, Wardenaar R, Renkens I, et al. (2016)
Nature Communications 7(1): 12989.
PUB | DOI | WoS | PubMed | Europe PMC
 
[24]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941793
Snowball: strain aware gene assembly of metagenomes
Gregor I, Schönhuth A, McHardy AC (2016)
Bioinformatics 32(17): i649-i657.
PUB | DOI | WoS | PubMed | Europe PMC
 
[23]
2016 | Preprint | Veröffentlicht | PUB-ID: 2941794
WhatsHap: fast and accurate read-based phasing
Martin M, Patterson M, Garg S, O Fischer S, Pisanti N, Klau GW, Schönhuth A, Marschall T (2016)
bioRxiv.
PUB | bioRxiv
 
[22]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941797
Characteristics of de novo structural changes in the human genome
Kloosterman WP, Francioli LC, Hormozdiari F, Marschall T, Hehir-Kwa JY, Abdellaoui A, Lameijer E-W, Moed MH, Koval V, Renkens I, van Roosmalen MJ, et al. (2015)
Genome Research 25(6): 792-801.
PUB | DOI | WoS | PubMed | Europe PMC
 
[21]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941798
SV-AUTOPILOT: optimized, automated construction of structural variation discovery and benchmarking pipelines
Leung WY, Marschall T, Paudel Y, Falquet L, Mei H, Schönhuth A, Maoz TY (2015)
BMC Genomics 16(1): 238.
PUB | DOI | WoS | PubMed | Europe PMC
 
[20]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941799
WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads
Patterson M, Marschall T, Pisanti N, van Iersel L, Stougie L, Klau GW, Schönhuth A (2015)
Journal of Computational Biology 22(6): 498-509.
PUB | DOI | WoS | PubMed | Europe PMC
 
[19]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941803
Population-specific genotype imputations using minimac or IMPUTE2
van Leeuwen EM, Kanterakis A, Deelen P, Kattenberg MV, Slagboom PE, de Bakker PIW, Wijmenga C, Swertz MA, Boomsma DI, van Duijn CM, Karssen LC, et al. (2015)
Nature Protocols 10(9): 1285-1296.
PUB | DOI | WoS | PubMed | Europe PMC
 
[18]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941804
Genome of the Netherlands population-specific imputations identify an ABCA6 variant associated with cholesterol levels
van Leeuwen EM, Karssen LC, Deelen J, Isaacs A, Medina-Gomez C, Mbarek H, Kanterakis A, Trompet S, Postmus I, Verweij N, van Enckevort DJ, et al. (2015)
Nature Communications 6(1): 6065.
PUB | DOI | WoS | PubMed | Europe PMC
 
[17]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941805
Genome-wide patterns and properties of de novo mutations in humans
Francioli LC, Polak PP, Koren A, Menelaou A, Chun S, Renkens I, van Duijn CM, Swertz M, Wijmenga C, van Ommen G, Slagboom PE, et al. (2015)
Nature Genetics 47(7): 822-826.
PUB | DOI | WoS | PubMed | Europe PMC
 
[16]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941807
Leveraging Distant Relatedness to Quantify Human Mutation and Gene-Conversion Rates
Palamara P F, Francioli L C, Wilton P R, Genovese G, Gusev A, Finucane H K, Sankararaman S, Sunyaev S R, de Bakker P IW, Wakeley J, Pe’er I, et al. (2015)
The American Journal of Human Genetics 97(6): 775-789.
PUB | DOI | WoS | PubMed | Europe PMC
 
[15]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764612 OA
Repeat- and error-aware comparison of deletions
Wittler R, Marschall T, Schönhuth A, Makinen V (2015)
Bioinformatics 31(18): 2947-2954.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[14]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941795
Genome sequence analysis with MonetDB
Cijvat R, Manegold S, Kersten M, Klau GW, Schönhuth A, Marschall T, Zhang Y (2015)
Datenbank-Spektrum 15(3): 185-191.
PUB | DOI
 
[13]
2015 | Preprint | PUB-ID: 2941808
On Hidden States in Quantum Random Walks
Faigle U, Schönhuth A (2015)
arXiv:1601.02882.
PUB | arXiv
 
[12]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941810
Viral Quasispecies Assembly via Maximal Clique Enumeration
Töpfer A, Marschall T, Bull RA, Luciani F, Schönhuth A, Beerenwinkel N (2014)
PLoS Computational Biology 10(3): e1003515.
PUB | DOI | WoS | PubMed | Europe PMC
 
[11]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941816
Improved imputation quality of low-frequency and rare variants in European samples using the ‘Genome of The Netherlands’
Deelen P, Menelaou A, van Leeuwen EM, Kanterakis A, van Dijk F, Medina-Gomez C, Francioli LC, Hottenga JJ, Karssen LC, Estrada K, Kreiner-Møller E, et al. (2014)
European Journal of Human Genetics 22(11): 1321-1326.
PUB | DOI | WoS | PubMed | Europe PMC
 
[10]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941835
Mapping proteins in the presence of paralogs using units of coevolution
El-Kebir M, Marschall T, Wohlers I, Patterson M, Heringa J, Schönhuth A, Klau GW (2013)
BMC Bioinformatics 14(S15): S18.
PUB | DOI | WoS | PubMed | Europe PMC
 
[9]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941836
MATE-CLEVER: Mendelian-inheritance-aware discovery and genotyping of midsize and long indels
Marschall T, Hajirasouliha I, Schönhuth A (2013)
Bioinformatics 29(24): 3143-3150.
PUB | DOI | WoS | PubMed | Europe PMC
 
[8]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941837
Discovering motifs that induce sequencing errors
Allhoff M, Schönhuth A, Martin M, Costa IG, Rahmann S, Marschall T (2013)
BMC Bioinformatics 14(Suppl 5): S1.
PUB | DOI | WoS | PubMed | Europe PMC
 
[7]
2013 | Preprint | Veröffentlicht | PUB-ID: 2941838
Sensitive Long-Indel-Aware Alignment of Sequencing Reads
Marschall T, Schönhuth A (2013)
arXiv:1303.3520.
PUB | arXiv
 
[6]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941839
CLEVER: clique-enumerating variant finder
Marschall T, Costa IG, Canzar S, Bauer M, Klau GW, Schliep A, Schönhuth A (2012)
Bioinformatics 28(22): 2875-2882.
PUB | DOI | WoS | PubMed | Europe PMC
 
[5]
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941840
Mirroring co-evolving trees in the light of their topologies
Hajirasouliha I, Schönhuth A, de Juan D, Valencia A, Sahinalp SC (2012)
Bioinformatics 28(9): 1202-1208.
PUB | DOI | WoS | PubMed | Europe PMC
 
[4]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941841
Determining Coding CpG Islands by Identifying Regions Significant for Pattern Statistics on Markov Chains
Singer M, Engström A, Schönhuth A, Pachter L (2011)
Statistical Applications in Genetics and Molecular Biology 10(1): 759.
PUB | DOI | WoS | PubMed | Europe PMC
 
[3]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941842
Classifying short gene expression time-courses with Bayesian estimation of piecewise constant functions
Hafemeister C, Costa IG, Schönhuth A, Schliep A (2011)
Bioinformatics 27(7): 946-952.
PUB | DOI | WoS | PubMed | Europe PMC
 
[2]
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941814
Generic identification of binary-valued hidden Markov processes
Schönhuth A (2011)
Journal of Algebraic Statistics 5(1): 72-99.
PUB
 
[1]
2010 | Preprint | Veröffentlicht | PUB-ID: 2941843 PUB | arXiv
 

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