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431 Publikationen

2021 | Zeitschriftenaufsatz | Angenommen | PUB-ID: 2946303
Computing the rearrangement distance of natural genomes
Bohnenkämper L, Dias Vieira Braga M, Dörr D, Stoye J (Accepted)
Journal of Computational Biology.
PUB
 
2020 | Preprint | Veröffentlicht | PUB-ID: 2945720
Detecting High Scoring Local Alignments in Pangenome Graphs
Schulz T, Wittler R, Rahmann S, Hach F, Stoye J (2020)
bioRxiv.
PUB | DOI | bioRxiv
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942421 OA
Alignment- and reference-free phylogenomics with colored de Bruijn graphs
Wittler R (2020)
Algorithms for Molecular Biology 15(1): 4.
PUB | PDF | DOI | WoS | PubMed | Europe PMC | arXiv
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2939618 OA
Finding all maximal perfect haplotype blocks in linear time
Alanko J, Bannai H, Cazaux B, Peterlongo P, Stoye J (2020)
Algorithms for Molecular Biology 15: 2.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2945430
HASLR: Fast Hybrid Assembly of Long Reads
Haghshenas E, Asghari H, Stoye J, Chauve C, Hach F (2020)
iScience 23(8): 101389.
PUB | DOI | WoS | PubMed | Europe PMC
 
2020 | Zeitschriftenaufsatz | Angenommen | PUB-ID: 2945991
Reconstructing Tumor Evolutionary Histories and Clone Trees in Polynomial-time with SubMARine
Sundermann LK, Wintersinger J, Rätsch G, Stoye J, Morris Q (Accepted)
PLOS Computational Biology.
PUB | bioRxiv
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2944226 OA
Importance of Defluviitalea raffinosedens for Hydrolytic Biomass Degradation in Co-Culture with Hungateiclostridium thermocellum
Rettenmaier R, Schneider M, Munk B, Lebuhn M, Jünemann S, Sczyrba A, Maus I, Zverlov V, Liebl W (2020)
Microorganisms 8(6): 915.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2020 | Report | PUB-ID: 2944669
NFDI4BioDiversity - A Consortium for the National Research Data Infrastructure (NFDI) : Proposal
Glöckner FO, Diepenbroek M, Felden J, Güntsch A, Stoye J, Overmann J, Wimmers K, Kostadinov I, Yahyapour R, Müller W, Scholz U, et al. (2020)
Zenodo.
PUB | DOI
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2942995
Searching and Inferring Colorful Topological Motifs in Vertex-Colored Graphs
Rubert D, Araujo E, Stefanes MA, Stoye J, Martinez F (2020)
Journal of Combinatorial Optimization 40: 379–411.
PUB | DOI | WoS
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2939598
Horizontal Gene Transfer Phylogenetics: A Random Walk Approach
Sevillya G, Dörr D, Lerner Y, Stoye J, Steel M, Snir S (2020)
Molecular Biology and Evolution 37(5): 1470–1479.
PUB | DOI | WoS | PubMed | Europe PMC
 
2020 | Preprint | Veröffentlicht | PUB-ID: 2940602
HASLR: Fast Hybrid Assembly of Long Reads
Haghshenas E, Asghari H, Stoye J, Chauve C, Hach F (2020)
bioRxiv.
PUB | DOI | Download (ext.) | bioRxiv
 
2020 | Preprint | Veröffentlicht | PUB-ID: 2943670
On motifs in colored graphs
Rubert DP, Araujo E, Stefanes MA, Stoye J, Martinez FV (2020)
arXiv:2005.13634.
PUB | Download (ext.) | arXiv
 
2020 | Preprint | Veröffentlicht | PUB-ID: 2939861
Computing the rearrangement distance of natural genomes
Bohnenkämper L, Dias Vieira Braga M, Dörr D, Stoye J (2020)
arXiv:2001.02139.
PUB | Download (ext.) | arXiv
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937712 OA
Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants
Rubert D, Martinez FHV, Stoye J, Dörr D (2020)
BMC Genomics 21(Suppl. 2): 273.
PUB | PDF | PubMed | Europe PMC
 
2020 | Zeitschriftenaufsatz | Angenommen | PUB-ID: 2942686
Computing the Inversion-Indel Distance
Willing E, Stoye J, Dias Vieira Braga M (Accepted)
IEEE/ACM Transactions on Computational Biology and Bioinformatics.
PUB | arXiv
 
2020 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2939729
Computing the rearrangement distance of natural genomes
Bohnenkämper L, Dias Vieira Braga M, Dörr D, Stoye J (2020)
In: Proceedings of RECOMB 2020. LNBI, 12074. 3-18.
PUB | DOI
 
2020 | Bielefelder E-Dissertation | PUB-ID: 2940338 OA
The MGX framework for microbial community analysis
Jaenicke S (2020)
Bielefeld: Universität Bielefeld.
PUB | PDF | DOI
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932884
Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium
Oey H, Zakrzewski M, Gravermann K, Young ND, Korhonen PK, Gobert GN, Nawaratna S, Hasan S, Martínez DM, You H, Lavin M, et al. (2019)
PLOS Pathogens 15(1): e1007513.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933161 OA
GOTrapper. A tool to navigate through branches of gene ontology hierarchy
Hassan H, Shanak S (2019)
BMC Bioinformatics 20(1): 20.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908574
The SCJ Small Parsimony Problem for Weighted Gene Adjacencies
Luhmann N, Lafond M, Thévenin A, Ouangraoua A, Wittler R, Chauve C (2019)
IEEE/ACM Transactions on Computational Biology and Bioinformatics 16(4): 1364-1373.
PUB | DOI | WoS | PubMed | Europe PMC
 

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