PUB - Publikationen an der Universität Bielefeld

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• [29]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202

  MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets
  Zakrzewski M, Bekel T, Ander C, Pühler A, Rupp O, Stoye J, Schlüter A, Goesmann A (2013)
  Journal of Biotechnology 167(2): 156-165.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [28]
  

  2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501752

  ESTs library from embryonic stages reveals tubulin and reflectin diversity in Sepia officinalis (Mollusca - Cephalopoda)
  Bassaglia Y, Bekel T, Da Silva C, Poulain J, Andouche A, Navet S, Bonnaud L (2012)
  Gene 498(2): 203-211.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [27]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003276

  Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing
  Jaenicke S, Ander C, Bekel T, Bisdorf R, Dröge M, Gartemann K-H, Jünemann S, Kaiser O, Krause L, Tille F, Zakrzewski M, et al. (2011)
  PLoS ONE 6(1): e14519.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [26]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396576

  Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing
  Becker J, Hackel M, Jakobi T, Rupp O, Schneider J, Szczepanowski R, Bekel T, Borth N, Goesmann A, Grillari J, Kaltschmidt C, et al. (2011)
  Journal of Biotechnology 156(3): 227-235.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [25]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289902

  Deep sequencing of naupliar-, cyprid- and adult-specific normalised Expressed Sequence Tag (EST) libraries of the acorn barnacle Balanus amphitrite
  De Gregoris TB, Rupp O, Klages S, Knaust F, Bekel T, Kube M, Burgess JG, Arnone MI, Goesmann A, Reinhardt R, Clare AS (2011)
  Biofouling 27(4): 367-374.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [24]
  

  2011 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2017892

  The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome
  Schneiker-Bekel S, Wibberg D, Bekel T, Blom J, Linke B, Neuweger H, Stiens M, Vorhölter F-J, Weidner S, Goesmann A, Pühler A, et al. (In Press)
  Journal of Biotechnology 155(1): 20-33.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [23]
  

  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785275

  Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion
  Trost E, Götker S, Schneider J, Schneiker-Bekel S, Szczepanowski R, Tilker A, Viehöver P, Arnold W, Bekel T, Blom J, Gartemann K-H, et al. (2010)
  BMC Genomics 11(1): 91.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [22]
  

  2010 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1894907

  Practical Guide: Genomic Techniques and How to Apply Them to Marine Questions
  Mittard-Runte V, Bekel T, Blom J, Dondrup M, Henckel K, Jaenicke S, Krause L, Linke B, Neuweger H, Schneiker-Bekel S, Goesmann A (2010)
  In: Introduction to Marine Genomics (Advances in Marine Genomics). Cock JM, Tessmar-Raible K, Boyen C, Viard F (Eds); , 1. Netherlands: Springer Netherlands: 315-396.

  PUB | DOI
   
• [21]
  

  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785552

  Transcriptome sequencing and comparative transcriptome analysis of the scleroglucan producer Sclerotium rolfsii
  Schmid J, Müller-Hagen D, Bekel T, Funk L, Stahl U, Sieber V, Meyer V (2010)
  BMC Genomics 11(1): 329.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [20]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783813

  Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example
  Neuweger H, Persicke M, Albaum S, Bekel T, Dondrup M, Hüser AT, Winnebald J, Schneider J, Kalinowski J, Goesmann A (2009)
  BMC Systems Biology 3(1): 82.

  PUB | PDF | DOI | PubMed | Europe PMC
   
• [19]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635300

  TRUNCATULIX - a data warehouse for the legume community
  Henckel K, Runte KJ, Bekel T, Dondrup M, Jakobi T, Küster H, Goesmann A (2009)
  BMC Plant Biology 9(1): 19.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [18]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591439

  Construction of an adult barnacle (Balanus amphitrite) cDNA library and selection of reference genes for quantitative RT-PCR studies
  De Gregoris TB, Borra M, Biffali E, Bekel T, Burgess JG, Kirby RR, Clare AS (2009)
  BMC Molecular Biology 10(1): 62.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC | GenBank
   
• [17]
  

  2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447

  The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies
  Bekel T, Henckel K, Küster H, Meyer F, Mittard-Runte V, Neuweger H, Paarmann D, Rupp O, Zakrzewski M, Pühler A, Stoye J, et al. (2009)
  Journal of Biotechnology 140(1-2): 3-12.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [16]
  

  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592024

  The genome of Xanthomonas campestris pv. campestris B 100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis
  Vorhölter F-J, Schneiker-Bekel S, Goesmann A, Krause L, Bekel T, Kaiser O, Linke B, Patschkowski T, Rückert C, Schmid J, Sidhu VK, et al. (2008)
  Journal of Biotechnology 134(1-2): 33-45.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [15]
  

  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585956

  Comparative genomic hybridisation and ultrafast pyrosequencing revealed remarkable differences between the Sinorhizobium meliloti genomes of the model strain Rm1021 and the field isolate SM11
  Stiens M, Becker A, Bekel T, Gödde V, Goesmann A, Niehaus K, Schneiker-Bekel S, Selbitschka W, Weidner S, Schlüter A, Pühler A (2008)
  Journal of Biotechnology 136(1-2): 31-37.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [14]
  

  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585987

  The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology
  Schlüter A, Bekel T, Diaz NN, Dondrup M, Eichenlaub R, Gartemann K-H, Krahn I, Krause L, Kroemeke H, Kruse O, Mussgnug JH, et al. (2008)
  Journal of Biotechnology 136(1-2): 77-90.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [13]
  

  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585918

  The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing
  Tauch A, Trost E, Tilker A, Ludewig U, Schneiker-Bekel S, Goesmann A, Arnold W, Bekel T, Brinkrolf K, Brune I, Goetker S, et al. (2008)
  Journal of Biotechnology 136(1-2): 11-21.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [12]
  

  2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631327

  Complete genome sequence of the myxobacterium Sorangium cellulosum
  Schneiker-Bekel S, Perlova O, Kaiser O, Gerth K, Alici A, Altmeyer MO, Bartels D, Bekel T, Beyer S, Bode E, Bode HB, et al. (2007)
  Nature Biotechnology 25(11): 1281-1289.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [11]
  

  2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754

  CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data
  Neuweger H, Baumbach J, Albaum S, Bekel T, Dondrup M, Hüser AT, Kalinowski J, Oehm S, Pühler A, Rahmann S, Weile J, et al. (2007)
  BMC Systems Biology 1(1): 55.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [10]
  

  2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1894739

  Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbioses
  Küster H, Becker A, Firnhaber C, Hohnjec N, Manthey K, Perlick AM, Bekel T, Dondrup M, Henckel K, Goesmann A, Meyer F, et al. (2007)
  Phytochemistry 68(1): 19-32.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [9]
  

  2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1596976

  Complete genome of the mutualistic, N-2-fixing grass endophyte Azoarcus sp strain BH72
  Krause A, Ramakumar A, Bartels D, Battistoni F, Bekel T, Boch J, Boehm M, Friedrich F, Hurek T, Krause L, Linke B, et al. (2006)
  Nature Biotechnology 24(11): 1385-1391.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [8]
  

  2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598182

  Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis
  Schneiker-Bekel S, dos Santos VAPM, Bartels D, Bekel T, Brecht M, Buhrmester J, Chernikova TN, Denaro R, Ferrer M, Gertler C, Goesmann A, et al. (2006)
  Nature Biotechnology 24(8): 997-1004.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [7]
  

  2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1598354

  Transcriptional snapshots provide insights into the molecular basis of arbuscular mycorrhiza in the model legume Medicago truncatula
  Hohnjec N, Henckel K, Bekel T, Gouzy J, Dondrup M, Goesmann A, Küster H (2006)
  FUNCTIONAL PLANT BIOLOGY 33(8): 737-748.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [6]
  

  2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1868701

  Ultrafast de novo sequencing of Corynebacterium urealyticum using the Genome Sequencer 20 System
  Tauch A, Trost E, Bekel T, Goesmann A, Ludewig U, Pühler A (2006)
  Biochemica 4: 4-6.

  PUB
   
• [5]
  

  2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1603317

  Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora
  Tauch A, Kaiser O, Hain T, Goesmann A, Weisshaar B, Albersmeier A, Bekel T, Bischoff N, Brune I, Chakraborty T, Kalinowski J, et al. (2005)
  Journal of Bacteriology 187(13): 4671-4682.

  PUB | DOI | WoS | PubMed | Europe PMC | GenBank
   
• [4]
  

  2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609197

  Transcriptional profiling of Medicago truncatula roots after infection with Aphanomyces euteiches (oomycota) identifies novel genes upregulated during this pathogenic interaction
  Nyamsuren O, Colditz F, Rosendahl S, Tamasloukht M, Bekel T, Meyer F, Kuester H, Franken P, Krajinski F (2003)
  PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY 63(1): 17-26.

  PUB | DOI | WoS
   
• [3]
  

  2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609251

  Whole genome shotgun sequencing guided-by bioinformatics pipelines - An optimized approach for an established technique
  Kaiser O, Bartels D, Bekel T, Goesmann A, Kespohl S, Pühler A, Meyer F (2003)
  JOURNAL OF BIOTECHNOLOGY 106(2-3): 121-133.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [2]
  

  2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773880

  GenDB - an open source genome annotation system for prokaryote genomes
  Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Pühler A (2003)
  Nucleic Acids Research 31(8): 2187-2195.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [1]
  

  2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612236

  Transcriptional changes in response to arbuscular mycorrhiza development in the model plant Medicago truncatula
  Wulf A, Manthey K, Doll J, Perlick AM, Linke B, Bekel T, Meyer F, Franken P, Küster H, Krajinski F (2003)
  Mol Plant Microbe Interact 16(4): 306-314.

  PUB | DOI | WoS | PubMed | Europe PMC | GenBank