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84 Publikationen

2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2948401
ConCysFind: a pipeline tool to predict conserved amino acids of protein sequences across the plant kingdom
Moore M, Wesemann C, Gossmann N, Sahm A, Krüger J, Sczyrba A, Dietz K-J (2020)
BMC Bioinformatics 21(1): 490.
PUB | DOI | PubMed | Europe PMC
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941645 OA
Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics
Maus I, Klocke M, Derenkó J, Stolze Y, Beckstette M, Jost C, Wibberg D, Blom J, Henke C, Willenbücher K, Rumming M, et al. (2020)
Environmental Microbiome 15(1): 7.
PUB | PDF | DOI | Download (ext.) | WoS
 
2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2941704
An Integrated Metagenome Catalog Reveals New Insights into the Murine Gut Microbiome.
Lesker TR, Durairaj AC, Galvez EJC, Lagkouvardos I, Baines JF, Clavel T, Sczyrba A, McHardy AC, Strowig T (2020)
Cell reports 30(9): 2909-2922.e6.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933767
CAMISIM: simulating metagenomes and microbial communities
Fritz A, Hofmann P, Majda S, Dahms E, Dröge J, Fiedler J, Lesker TR, Belmann P, DeMaere MZ, Darling AE, Sczyrba A, et al. (2019)
Microbiome 7(1): 17.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936223 OA
de.NBI Cloud federation through ELIXIR AAI
Belmann P, Fischer B, Krüger J, Procházka M, Rasche H, Prinz M, Hanussek M, Lang M, Bartusch F, Gläßle B, Krüger J, et al. (2019)
F1000Research 8: 842.
PUB | PDF | DOI | Download (ext.) | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2934798
Evaluation of commercially available DNA extraction kits for the analysis of the broiler chicken cecal microbiota.
Pankoke H, Maus I, Loh G, Huser A, Seifert J, Tilker A, Hark S, Sczyrba A, Pelzer S, Kleinbolting J (2019)
FEMS microbiology letters.
PUB | DOI | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935923 OA
Effect of Long-Term Farming Practices on Agricultural Soil Microbiome Members Represented by Metagenomically Assembled Genomes (MAGs) and Their Predicted Plant-Beneficial Genes
Nelkner J, Henke C, Lin TW, Pätzold W, Hassa J, Jaenicke S, Grosch R, Pühler A, Sczyrba A, Schlüter A (2019)
Genes 10(6): 424.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2019 | Bielefelder E-Dissertation | PUB-ID: 2936599 OA
Cloud-based Bioinformatics Framework for Next-Generation Sequencing Data
Huang L (2019)
Bielefeld: Universität Bielefeld.
PUB | PDF | DOI
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920777
Binning Enables Efficient Host Genome Reconstruction in Cnidarian Holobionts
Celis JS, Wibberg D, Ramírez-Portilla C, Rupp O, Sczyrba A, Winkler A, Kalinowski J, Wilke T (2018)
GigaScience 7(7): giy075.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920723
AMBER: Assessment of Metagenome BinnERs
Meyer F, Hofmann P, Belmann P, Garrido-Oter R, Fritz A, Sczyrba A, McHardy AC (2018)
GigaScience 7(6): giy069.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920750
Characterization of Bathyarchaeota genomes assembled from metagenomes of biofilms residing in mesophilic and thermophilic biogas reactors
Maus I, Rumming M, Bergmann I, Heeg K, Pohl M, Nettmann E, Jaenicke S, Blom J, Pühler A, Schlüter A, Sczyrba A, et al. (2018)
Biotechnology for Biofuels 11(1): 167.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930593
Common ELIXIR Service for Researcher Authentication and Authorisation
Linden M, Prochazka M, Lappalainen I, Bucik D, Vyskocil P, Kuba M, Silén S, Belmann P, Sczyrba A, Newhouse S, Matyska L, et al. (2018)
F1000Research 7: 1199.
PUB | DOI | Download (ext.) | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2915890
Analyzing large scale genomic data on the cloud with Sparkhit
Huang L, Krüger J, Sczyrba A (2018)
Bioinformatics 34(9): 1457-1465.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916929
Targeted in situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plants
Stolze Y, Bremges A, Maus I, Pühler A, Sczyrba A, Schlüter A (2018)
Microbial Biotechnology 11(4): 667-679.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914959
Invasion ecology applied to inoculation of plant growth promoting bacteria through a novel SIMPER-PCA approach
da Schoren Costa P, Bolzan de Campos S, Albersmeier A, Dirksen P, Pereira Dresseno AL, Andrade Pais dos Santos OJ, Lima Milani KM, Etto RM, Battistus AG, Peres Rodrigues da Costa AC, Martinez de Oliveira AL, et al. (2018)
Plant and Soil 422(1-2): 467-478.
PUB | DOI | WoS
 
2018 | Bielefelder E-Dissertation | PUB-ID: 2918990 OA PUB | PDF
 
2018 | Bielefelder Masterarbeit | PUB-ID: 2919932 OA
Concept, design and initial implementation of the de.NBI Cloud Portal
Wiens M (2018)
Bielefeld: Universität Bielefeld.
PUB | PDF
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918275
Insights into the fundamental physiology of the uncultured Fe-oxidizing bacterium Leptothrix ochracea
Fleming EJ, Woyke T, Donatello AR, Kuypers MMM, Sczyrba A, Littmann S, Emerson D (2018)
Applied and Environmental Microbiology 84(9): e02239-17.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914367
Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software
Sczyrba A, Hofmann P, Belmann P, Koslicki D, Janssen S, Dröge J, Gregor I, Majda S, Fiedler J, Dahms E, Bremges A, et al. (2017)
Nature Methods 14(11): 1063-1071.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | PUB-ID: 2913876
Benchmark data sets, software results and reference data for the first CAMI challenge
Sczyrba A, Hofman P, Belmann P, Koslicki D, Janssen S, Dröge J, Gregor I, Majda S, Fiedler J, Dahms E, Bremges A, et al. (2017)
GigaScience Database.
PUB | DOI
 

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