17 Publikationen
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2024 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2988649Schmid, Nicole, Brandt, David, Walasek, Claudia, Rolland, Clara, Wittmann, Johannes, Fischer, Dorian, Müsken, Mathias, Kalinowski, Jörn, and Thormann, Kai. “An autonomous plasmid as an inovirus phage satellite”. Applied and Environmental Microbiology (2024): e0024624.PUB | DOI | PubMed | Europe PMC
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2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2979424Schmidt, Pascal, Brandt, David, Busche, Tobias, and Kalinowski, Jörn. “Characterization of Bacterial Transcriptional Regulatory Networks in Escherichia coli through Genome-Wide In Vitro Run-Off Transcription/RNA-seq (ROSE)”. Microorganisms 11.6 (2023): 1388.PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint
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2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2967684Behle, Anna, Dietsch, Maximilian, Goldschmidt, Louis, Murugathas, Wandana, Berwanger, Lutz C, Burmester, Jonas, Yao, Lun, Brandt, David, Busche, Tobias, Kalinowski, Jörn, Hudson, Elton P, Ebenhöh, Oliver, Axmann, Ilka M, and Machné, Rainer. “Manipulation of topoisomerase expression inhibits cell division but not growth and reveals a distinctive promoter structure in ”. Nucleic Acids Research (2022): gkac1132.PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2966624Hertel, Oliver, Neuss, Anne, Busche, Tobias, Brandt, David, Kalinowski, Jörn, Bahnemann, Janina, and Noll, Thomas. “Enhancing stability of recombinant CHO cells by CRISPR/Cas9-mediated site-specific integration into regions with distinct histone modifications”. Frontiers in Bioengineering and Biotechnology 10 (2022).PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957501Brandt, David, Simunovic, Marina, Busche, Tobias, Haak, Markus, Belmann, Peter, Jünemann, Sebastian, Schulz, Tizian, Klages, Levin Joe, Vinke, Svenja, Beckstette, Michael, Pohl, Ehmke, Scherer, Christiane, Sczyrba, Alexander, and Kalinowski, Jörn. “Multiple Occurrences of a 168-Nucleotide Deletion in SARS-CoV-2 ORF8, Unnoticed by Standard Amplicon Sequencing and Variant Calling Pipelines”. Viruses 13.9 (2021): 1870.PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956600Schaffert, Lena, Ruwe, Matthias, Milse, Johanna, Hanuschka, Katharina, Ortseifen, Vera, Droste, Julian, Brandt, David, Schlüter, Laura, Kutter, Yvonne, Vinke, Svenja, Viehöfer, Prisca, Jacob, Lucas, Lübke, Nils-Christian, Schulte-Berndt, Eva, Hain, Carsten, Linder, Marten, Schmidt, Pascal, Wollenschläger, Lars, Luttermann, Tobias, Thieme, Eric, Hassa, Julia, Haak, Markus, Wittchen, Manuel, Mentz, Almut, Persicke, Marcus, Busche, Tobias, and Rückert, Christian. “Classification of three corynebacterial strains isolated from a small paddock in North Rhine-Westphalia: proposal of Corynebacterium kalinowskii sp. nov., Corynebacterium comes sp. nov. and Corynebacterium occultum sp. nov.”. International Journal of Systematic and Evolutionary Microbiology 71.8 (2021).PUB | DOI | WoS | PubMed | Europe PMC | GenBank
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2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2955512Aevarsson, Arnthor, Kaczorowska, Anna-Karina, Adalsteinsson, Bjorn Thor, Ahlqvist, Josefin, Al-Karadaghi, Salam, Altenbuchner, Joseph, Arsin, Hasan, Atlasson, Ulfur August, Brandt, David, Cichowicz-Cieslak, Magdalena, Cornish, Katy A S, Courtin, Jeremy, Dabrowski, Slawomir, Dahle, Hakon, Djeffane, Samia, Dorawa, Sebastian, Dusaucy, Julia, Enault, Francois, Fedoy, Anita-Elin, Freitag-Pohl, Stefanie, Fridjonsson, Olafur H, Galiez, Clovis, Glomsaker, Eirin, Guerin, Mickael, Gundeso, Sigurd E, Gudmundsdottir, Elisabet E, Gudmundsson, Hordur, Hakansson, Maria, Henke, Christian, Helleux, Alexandra, Henriksen, Jorn Remi, Hjorleifdottir, Sigridur, Hreggvidsson, Gudmundur O, Jasilionis, Andrius, Jochheim, Annika, Jonsdottir, Ilmur, Jonsdottir, Lilja Bjork, Jurczak-Kurek, Agata, Kaczorowski, Tadeusz, Kalinowski, Jörn, Kozlowski, Lukasz P, Krupovic, Mart, Kwiatkowska-Semrau, Karolina, Lanes, Olav, Lange, Joanna, Lebrat, Julien, Linares-Pasten, Javier, Liu, Ying, Lorentsen, Steffen A, Luttermann, Tobias, Mas, Thibaud, Merre, William, Mirdita, Milot, Morzywolek, Agnieszka, Ndela, Eric Olo, Karlsson, Eva Nordberg, Olgudottir, Edda, Pedersen, Cathrine, Perler, Francine, Petursdottir, Solveig K, Plotka, Magdalena, Pohl, Ehmke, Prangishvili, David, Ray, Jessica L, Reynisson, Birkir, Robertsdottir, Tara, Sandaa, Ruth-Anne, Sczyrba, Alexander, Skirnisdottir, Sigurlaug, Soding, Johannes, Solstad, Terese, Steen, Ida H, Stefansson, Sigmar Karl, Steinegger, Martin, Overa, Katrine Stange, Striberny, Bernd, Svensson, Anders, Szadkowska, Monika, Tarrant, Emma J, Terzian, Paul, Tourigny, Mathilde, van den Bergh, Tom, Vanhalst, Justine, Vincent, Jonathan, Vroling, Bas, Walse, Bjorn, Wang, Lei, Watzlawick, Hildegard, Welin, Martin, Werbowy, Olesia, Wons, Ewa, and Zhang, Ruoshi. “Going to extremes - a metagenomic journey into the dark matter of life”. FEMS microbiology letters (2021): fnab067.PUB | DOI | WoS | PubMed | Europe PMC
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2021 | Zeitschriftenaufsatz | Angenommen | PUB-ID: 2956159Medvedeva, Sofia, Brandt, David, Cvirkaite-Krupovic, Virginija, Liu, Ying, Severinov, Konstantin, Ishino, Sonoko, Ishino, Yoshizumi, Prangishvili, David, Kalinowski, Jörn, and Krupovic, Mart. “New insights into the diversity and evolution of the archaeal mobilome from three complete genomes of Saccharolobus shibatae”. Environmental microbiology (Accepted).PUB | DOI | WoS | PubMed | Europe PMC
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2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955919Schmitz, Lisa Marie, Hageneier, Felix, Rosenthal, Katrin, Busche, Tobias, Brandt, David, Kalinowski, Jörn, and Lutz, Stephan. “Recombinant expression and characterization of novel P450s from Actinosynnema mirum”. Bioorganic & medicinal chemistry 42 (2021): 116241.PUB | DOI | WoS | PubMed | Europe PMC
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2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2951141Blanc-Mathieu, Romain, Dahle, Hakon, Hofgaard, Antje, Brandt, David, Ban, Hiroki, Kalinowski, Jörn, Ogata, Hiroyuki, and Sandaa, Ruth-Anne. “A persistent giant algal virus, with a unique morphology, encodes an unprecedented number of genes involved in energy metabolism.”. Journal of virology (2021).PUB | DOI | WoS | PubMed | Europe PMC
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946260Radukic, Marco, Brandt, David, Haak, Markus, Müller, Kristian, and Kalinowski, Jörn. “Nanopore sequencing of native adeno-associated virus (AAV) single-stranded DNA using a transposase-based rapid protocol”. NAR Genomics and Bioinformatics 2.4 (2020): lqaa074.PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946299Kreienbaum, Maximilian, Dörrich, Anja K., Brandt, David, Schmid, Nicole E., Leonhard, Tabea, Hager, Fabian, Brenzinger, Susanne, Hahn, Julia, Glatter, Timo, Ruwe, Matthias, Briegel, Ariane, Kalinowski, Jörn, and Thormann, Kai M. “Isolation and Characterization of Shewanella Phage Thanatos Infecting and Lysing Shewanella oneidensis and Promoting Nascent Biofilm Formation”. Frontiers in Microbiology 11 (2020): 573260.PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2020 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2943812Radukic, Marco, Brandt, David, Haak, Markus, Kalinowski, Jörn, and Müller, Kristian. “Long-Read Characterization of Adeno-Associated Virus Packaged DNA by Direct Nanopore Sequencing Reveals Genome Fusions and Recombination between Genomes and Producer Plasmids”. MOLECULAR THERAPY. Cambridge: Cell Press, 2020.Vol. 28. 398-399.PUB | WoS
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2938413Schaffert, Lena, Schneiker-Bekel, Susanne, Dymek, Saskia, Droste, Julian, Persicke, Marcus, Busche, Tobias, Brandt, David, Pühler, Alfred, and Kalinowski, Jörn. “Essentiality of the Maltase AmlE in Maltose Utilization and Its Transcriptional Regulation by the Repressor AmlR in the Acarbose-Producing Bacterium Actinoplanes sp. SE50/110”. Frontiers in Microbiology 10 (2019): 2448.PUB | Dateien verfügbar | DOI | Download (ext.) | WoS | PubMed | Europe PMC | EBI - ENA Project
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936439Schaffert, Lena, März, Camilla, Burkhardt, Lisa, Droste, Julian, Brandt, David, Busche, Tobias, Rosen, Winfried, Schneiker-Bekel, Susanne, Persicke, Marcus, Pühler, Alfred, and Kalinowski, Jörn. “Evaluation of vector systems and promoters for overexpression of the acarbose biosynthesis gene acbC in Actinoplanes sp. SE50/110”. Microbial Cell Factories 18.1 (2019): 114.PUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935511Liu, Ying, Brandt, David, Ishino, Sonoko, Ishino, Yoshizumi, Koonin, Eugene V., Kalinowski, Jörn, Krupovic, Mart, and Prangishvili, David. “New archaeal viruses discovered by metagenomic analysis of viral communities in enrichment cultures”. Environmental Microbiology 21.6 (2018): 2002-2014.PUB | DOI | WoS | PubMed | Europe PMC