PUB - Publikationen an der Universität Bielefeld

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• [17]
  

  2024 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2988649

  Schmid, N., Brandt, D., Walasek, C., Rolland, C., Wittmann, J., Fischer, D., Müsken, M., Kalinowski, J. & Thormann, K. (2024). An autonomous plasmid as an inovirus phage satellite. Applied and Environmental Microbiology : e0024624. American Society for Microbiology . doi:10.1128/aem.00246-24.

  PUB | DOI | PubMed | Europe PMC
   
• [16]
  

  2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2979424

  Schmidt, P., Brandt, D., Busche, T. & Kalinowski, J. (2023). Characterization of Bacterial Transcriptional Regulatory Networks in Escherichia coli through Genome-Wide In Vitro Run-Off Transcription/RNA-seq (ROSE). Microorganisms, 11(6): 1388. MDPI . doi:10.3390/microorganisms11061388.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint
   
• [15]
  

  2023 | Bielefelder E-Dissertation | PUB-ID: 2981158

  Brandt, D. (2023). Advanced genome and epigenome analyses of viruses from different domains of life. Bielefeld: Universität Bielefeld.

  PUB | PDF
   
• [14]
  

  2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2967684

  Behle, A., Dietsch, M., Goldschmidt, L., Murugathas, W., Berwanger, L.C., Burmester, J., Yao, L., Brandt, D., Busche, T., Kalinowski, J., Hudson, E.P., Ebenhöh, O., Axmann, I.M. & Machné, R. (2022). Manipulation of topoisomerase expression inhibits cell division but not growth and reveals a distinctive promoter structure in . Nucleic Acids Research: gkac1132. Oxford University Press (OUP). doi:10.1093/nar/gkac1132.

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• [13]
  

  2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2966624

  Hertel, O., Neuss, A., Busche, T., Brandt, D., Kalinowski, J., Bahnemann, J. & Noll, T. (2022). Enhancing stability of recombinant CHO cells by CRISPR/Cas9-mediated site-specific integration into regions with distinct histone modifications. Frontiers in Bioengineering and Biotechnology, 10. Frontiers Media SA. doi:10.3389/fbioe.2022.1010719.

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• [12]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957501

  Brandt, D., Simunovic, M., Busche, T., Haak, M., Belmann, P., Jünemann, S., Schulz, T., Klages, L.J., Vinke, S., Beckstette, M., Pohl, E., Scherer, C., Sczyrba, A. & Kalinowski, J. (2021). Multiple Occurrences of a 168-Nucleotide Deletion in SARS-CoV-2 ORF8, Unnoticed by Standard Amplicon Sequencing and Variant Calling Pipelines. Viruses, 13(9): 1870. doi:10.3390/v13091870.

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• [11]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956600

  Schaffert, L., Ruwe, M., Milse, J., Hanuschka, K., Ortseifen, V., Droste, J., Brandt, D., Schlüter, L., Kutter, Y., Vinke, S., Viehöfer, P., Jacob, L., Lübke, N.-C., Schulte-Berndt, E., Hain, C., Linder, M., Schmidt, P., Wollenschläger, L., Luttermann, T., Thieme, E., Hassa, J., Haak, M., Wittchen, M., Mentz, A., Persicke, M., Busche, T. & Rückert, C. (2021). Classification of three corynebacterial strains isolated from a small paddock in North Rhine-Westphalia: proposal of Corynebacterium kalinowskii sp. nov., Corynebacterium comes sp. nov. and Corynebacterium occultum sp. nov. International Journal of Systematic and Evolutionary Microbiology, 71(8). Microbiology Society. doi:10.1099/ijsem.0.004933.

  PUB | DOI | WoS | PubMed | Europe PMC | GenBank
   
• [10]
  

  2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2955512

  Aevarsson, A., Kaczorowska, A.-K., Adalsteinsson, B.T., Ahlqvist, J., Al-Karadaghi, S., Altenbuchner, J., Arsin, H., Atlasson, U.A., Brandt, D., Cichowicz-Cieslak, M., Cornish, K.A.S., Courtin, J., Dabrowski, S., Dahle, H., Djeffane, S., Dorawa, S., Dusaucy, J., Enault, F., Fedoy, A.-E., Freitag-Pohl, S., Fridjonsson, O.H., Galiez, C., Glomsaker, E., Guerin, M., Gundeso, S.E., Gudmundsdottir, E.E., Gudmundsson, H., Hakansson, M., Henke, C., Helleux, A., Henriksen, J.R., Hjorleifdottir, S., Hreggvidsson, G.O., Jasilionis, A., Jochheim, A., Jonsdottir, I., Jonsdottir, L.B., Jurczak-Kurek, A., Kaczorowski, T., Kalinowski, J., Kozlowski, L.P., Krupovic, M., Kwiatkowska-Semrau, K., Lanes, O., Lange, J., Lebrat, J., Linares-Pasten, J., Liu, Y., Lorentsen, S.A., Luttermann, T., Mas, T., Merre, W., Mirdita, M., Morzywolek, A., Ndela, E.O., Karlsson, E.N., Olgudottir, E., Pedersen, C., Perler, F., Petursdottir, S.K., Plotka, M., Pohl, E., Prangishvili, D., Ray, J.L., Reynisson, B., Robertsdottir, T., Sandaa, R.-A., Sczyrba, A., Skirnisdottir, S., Soding, J., Solstad, T., Steen, I.H., Stefansson, S.K., Steinegger, M., Overa, K.S., Striberny, B., Svensson, A., Szadkowska, M., Tarrant, E.J., Terzian, P., Tourigny, M., van den Bergh, T., Vanhalst, J., Vincent, J., Vroling, B., Walse, B., Wang, L., Watzlawick, H., Welin, M., Werbowy, O., Wons, E. & Zhang, R. (2021). Going to extremes - a metagenomic journey into the dark matter of life. FEMS microbiology letters: fnab067. Oxford University Press. doi:10.1093/femsle/fnab067.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [9]
  

  2021 | Zeitschriftenaufsatz | Angenommen | PUB-ID: 2956159

  Medvedeva, S., Brandt, D., Cvirkaite-Krupovic, V., Liu, Y., Severinov, K., Ishino, S., Ishino, Y., Prangishvili, D., Kalinowski, J. & Krupovic, M. (Accepted). New insights into the diversity and evolution of the archaeal mobilome from three complete genomes of Saccharolobus shibatae. Environmental microbiology. Wiley. doi:10.1111/1462-2920.15654.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [8]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955919

  Schmitz, L.M., Hageneier, F., Rosenthal, K., Busche, T., Brandt, D., Kalinowski, J. & Lutz, S. (2021). Recombinant expression and characterization of novel P450s from Actinosynnema mirum. Bioorganic & medicinal chemistry, 42: 116241. Elsevier. doi:10.1016/j.bmc.2021.116241.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [7]
  

  2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2951141

  Blanc-Mathieu, R., Dahle, H., Hofgaard, A., Brandt, D., Ban, H., Kalinowski, J., Ogata, H. & Sandaa, R.-A. (2021). A persistent giant algal virus, with a unique morphology, encodes an unprecedented number of genes involved in energy metabolism. Journal of virology. American Society for Microbiology. doi:10.1128/JVI.02446-20.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [6]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946260

  Radukic, M., Brandt, D., Haak, M., Müller, K. & Kalinowski, J. (2020). Nanopore sequencing of native adeno-associated virus (AAV) single-stranded DNA using a transposase-based rapid protocol. NAR Genomics and Bioinformatics, 2(4): lqaa074. Oxford University Press . doi:10.1093/nargab/lqaa074.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [5]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946299

  Kreienbaum, M., Dörrich, A.K., Brandt, D., Schmid, N.E., Leonhard, T., Hager, F., Brenzinger, S., Hahn, J., Glatter, T., Ruwe, M., Briegel, A., Kalinowski, J. & Thormann, K.M. (2020). Isolation and Characterization of Shewanella Phage Thanatos Infecting and Lysing Shewanella oneidensis and Promoting Nascent Biofilm Formation. Frontiers in Microbiology, 11: 573260. Frontiers Media SA. doi:10.3389/fmicb.2020.573260.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [4]
  

  2020 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2943812

  Radukic, M., Brandt, D., Haak, M., Kalinowski, J. & Müller, K. (2020). Long-Read Characterization of Adeno-Associated Virus Packaged DNA by Direct Nanopore Sequencing Reveals Genome Fusions and Recombination between Genomes and Producer Plasmids. MOLECULAR THERAPY (S. 398-399). Gehalten auf der 23rd Annual Meeting of the American-Society-for-Gene-and-Cell-Therapy, Cambridge: Cell Press.

  PUB | WoS
   
• [3]
  

  2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2938413

  Schaffert, L., Schneiker-Bekel, S., Dymek, S., Droste, J., Persicke, M., Busche, T., Brandt, D., Pühler, A. & Kalinowski, J. (2019). Essentiality of the Maltase AmlE in Maltose Utilization and Its Transcriptional Regulation by the Repressor AmlR in the Acarbose-Producing Bacterium Actinoplanes sp. SE50/110. Frontiers in Microbiology, 10: 2448. Frontiers Media. doi:10.3389/fmicb.2019.02448.

  PUB | Dateien verfügbar | DOI | Download (ext.) | WoS | PubMed | Europe PMC | EBI - ENA Project
   
• [2]
  

  2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936439

  Schaffert, L., März, C., Burkhardt, L., Droste, J., Brandt, D., Busche, T., Rosen, W., Schneiker-Bekel, S., Persicke, M., Pühler, A. & Kalinowski, J. (2019). Evaluation of vector systems and promoters for overexpression of the acarbose biosynthesis gene acbC in Actinoplanes sp. SE50/110. Microbial Cell Factories, 18(1): 114. Springer Nature. doi:10.1186/s12934-019-1162-5.

  PUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
   
• [1]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935511

  Liu, Y., Brandt, D., Ishino, S., Ishino, Y., Koonin, E.V., Kalinowski, J., Krupovic, M. & Prangishvili, D. (2018). New archaeal viruses discovered by metagenomic analysis of viral communities in enrichment cultures. Environmental Microbiology, 21(6), 2002-2014. Wiley. doi:10.1111/1462-2920.14479.

  PUB | DOI | WoS | PubMed | Europe PMC