PUB - Publikationen an der Universität Bielefeld

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• [17]
  

  2024 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2988649

  Schmid N, Brandt D, Walasek C, Rolland C, Wittmann J, Fischer D, Müsken M, Kalinowski J, Thormann K (2024)
  An autonomous plasmid as an inovirus phage satellite.
  Applied and Environmental Microbiology : e0024624.

  PUB | DOI | PubMed | Europe PMC
   
• [16]
  

  2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2979424

  Schmidt P, Brandt D, Busche T, Kalinowski J (2023)
  Characterization of Bacterial Transcriptional Regulatory Networks in Escherichia coli through Genome-Wide In Vitro Run-Off Transcription/RNA-seq (ROSE).
  Microorganisms 11(6): 1388.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint
   
• [15]
  

  2023 | Bielefelder E-Dissertation | PUB-ID: 2981158

  Brandt D (2023)
  Advanced genome and epigenome analyses of viruses from different domains of life.
  Bielefeld: Universität Bielefeld.

  PUB | PDF
   
• [14]
  

  2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2967684

  Behle A, Dietsch M, Goldschmidt L, Murugathas W, Berwanger LC, Burmester J, Yao L, Brandt D, Busche T, Kalinowski J, Hudson EP, Ebenhöh O, Axmann IM, Machné R (2022)
  Manipulation of topoisomerase expression inhibits cell division but not growth and reveals a distinctive promoter structure in .
  Nucleic Acids Research: gkac1132.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [13]
  

  2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2966624

  Hertel O, Neuss A, Busche T, Brandt D, Kalinowski J, Bahnemann J, Noll T (2022)
  Enhancing stability of recombinant CHO cells by CRISPR/Cas9-mediated site-specific integration into regions with distinct histone modifications.
  Frontiers in Bioengineering and Biotechnology 10.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [12]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957501

  Brandt D, Simunovic M, Busche T, Haak M, Belmann P, Jünemann S, Schulz T, Klages LJ, Vinke S, Beckstette M, Pohl E, Scherer C, Sczyrba A, Kalinowski J (2021)
  Multiple Occurrences of a 168-Nucleotide Deletion in SARS-CoV-2 ORF8, Unnoticed by Standard Amplicon Sequencing and Variant Calling Pipelines.
  Viruses 13(9): 1870.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [11]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956600

  Schaffert L, Ruwe M, Milse J, Hanuschka K, Ortseifen V, Droste J, Brandt D, Schlüter L, Kutter Y, Vinke S, Viehöfer P, Jacob L, Lübke N-C, Schulte-Berndt E, Hain C, Linder M, Schmidt P, Wollenschläger L, Luttermann T, Thieme E, Hassa J, Haak M, Wittchen M, Mentz A, Persicke M, Busche T, Rückert C (2021)
  Classification of three corynebacterial strains isolated from a small paddock in North Rhine-Westphalia: proposal of Corynebacterium kalinowskii sp. nov., Corynebacterium comes sp. nov. and Corynebacterium occultum sp. nov.
  International Journal of Systematic and Evolutionary Microbiology 71(8).

  PUB | DOI | WoS | PubMed | Europe PMC | GenBank
   
• [10]
  

  2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2955512

  Aevarsson A, Kaczorowska A-K, Adalsteinsson BT, Ahlqvist J, Al-Karadaghi S, Altenbuchner J, Arsin H, Atlasson UA, Brandt D, Cichowicz-Cieslak M, Cornish KAS, Courtin J, Dabrowski S, Dahle H, Djeffane S, Dorawa S, Dusaucy J, Enault F, Fedoy A-E, Freitag-Pohl S, Fridjonsson OH, Galiez C, Glomsaker E, Guerin M, Gundeso SE, Gudmundsdottir EE, Gudmundsson H, Hakansson M, Henke C, Helleux A, Henriksen JR, Hjorleifdottir S, Hreggvidsson GO, Jasilionis A, Jochheim A, Jonsdottir I, Jonsdottir LB, Jurczak-Kurek A, Kaczorowski T, Kalinowski J, Kozlowski LP, Krupovic M, Kwiatkowska-Semrau K, Lanes O, Lange J, Lebrat J, Linares-Pasten J, Liu Y, Lorentsen SA, Luttermann T, Mas T, Merre W, Mirdita M, Morzywolek A, Ndela EO, Karlsson EN, Olgudottir E, Pedersen C, Perler F, Petursdottir SK, Plotka M, Pohl E, Prangishvili D, Ray JL, Reynisson B, Robertsdottir T, Sandaa R-A, Sczyrba A, Skirnisdottir S, Soding J, Solstad T, Steen IH, Stefansson SK, Steinegger M, Overa KS, Striberny B, Svensson A, Szadkowska M, Tarrant EJ, Terzian P, Tourigny M, van den Bergh T, Vanhalst J, Vincent J, Vroling B, Walse B, Wang L, Watzlawick H, Welin M, Werbowy O, Wons E, Zhang R (2021)
  Going to extremes - a metagenomic journey into the dark matter of life.
  FEMS microbiology letters: fnab067.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [9]
  

  2021 | Zeitschriftenaufsatz | Angenommen | PUB-ID: 2956159

  Medvedeva S, Brandt D, Cvirkaite-Krupovic V, Liu Y, Severinov K, Ishino S, Ishino Y, Prangishvili D, Kalinowski J, Krupovic M (Accepted)
  New insights into the diversity and evolution of the archaeal mobilome from three complete genomes of Saccharolobus shibatae.
  Environmental microbiology.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [8]
  

  2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955919

  Schmitz LM, Hageneier F, Rosenthal K, Busche T, Brandt D, Kalinowski J, Lutz S (2021)
  Recombinant expression and characterization of novel P450s from Actinosynnema mirum.
  Bioorganic & medicinal chemistry 42: 116241.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [7]
  

  2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2951141

  Blanc-Mathieu R, Dahle H, Hofgaard A, Brandt D, Ban H, Kalinowski J, Ogata H, Sandaa R-A (2021)
  A persistent giant algal virus, with a unique morphology, encodes an unprecedented number of genes involved in energy metabolism.
  Journal of virology.

  PUB | DOI | WoS | PubMed | Europe PMC
   
• [6]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946260

  Radukic M, Brandt D, Haak M, Müller K, Kalinowski J (2020)
  Nanopore sequencing of native adeno-associated virus (AAV) single-stranded DNA using a transposase-based rapid protocol.
  NAR Genomics and Bioinformatics 2(4): lqaa074.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [5]
  

  2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946299

  Kreienbaum M, Dörrich AK, Brandt D, Schmid NE, Leonhard T, Hager F, Brenzinger S, Hahn J, Glatter T, Ruwe M, Briegel A, Kalinowski J, Thormann KM (2020)
  Isolation and Characterization of Shewanella Phage Thanatos Infecting and Lysing Shewanella oneidensis and Promoting Nascent Biofilm Formation.
  Frontiers in Microbiology 11: 573260.

  PUB | PDF | DOI | WoS | PubMed | Europe PMC
   
• [4]
  

  2020 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2943812

  Radukic M, Brandt D, Haak M, Kalinowski J, Müller K (2020)
  Long-Read Characterization of Adeno-Associated Virus Packaged DNA by Direct Nanopore Sequencing Reveals Genome Fusions and Recombination between Genomes and Producer Plasmids.
  In: MOLECULAR THERAPY. 28. Cambridge: Cell Press: 398-399.

  PUB | WoS
   
• [3]
  

  2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2938413

  Schaffert L, Schneiker-Bekel S, Dymek S, Droste J, Persicke M, Busche T, Brandt D, Pühler A, Kalinowski J (2019)
  Essentiality of the Maltase AmlE in Maltose Utilization and Its Transcriptional Regulation by the Repressor AmlR in the Acarbose-Producing Bacterium Actinoplanes sp. SE50/110.
  Frontiers in Microbiology 10: 2448.

  PUB | Dateien verfügbar | DOI | Download (ext.) | WoS | PubMed | Europe PMC | EBI - ENA Project
   
• [2]
  

  2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936439

  Schaffert L, März C, Burkhardt L, Droste J, Brandt D, Busche T, Rosen W, Schneiker-Bekel S, Persicke M, Pühler A, Kalinowski J (2019)
  Evaluation of vector systems and promoters for overexpression of the acarbose biosynthesis gene acbC in Actinoplanes sp. SE50/110.
  Microbial Cell Factories 18(1): 114.

  PUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
   
• [1]
  

  2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935511

  Liu Y, Brandt D, Ishino S, Ishino Y, Koonin EV, Kalinowski J, Krupovic M, Prangishvili D (2018)
  New archaeal viruses discovered by metagenomic analysis of viral communities in enrichment cultures.
  Environmental Microbiology 21(6): 2002-2014.

  PUB | DOI | WoS | PubMed | Europe PMC