16 Publikationen

Alle markieren

  • [16]
    2023 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2979424 OA
    Schmidt, P., Brandt, D., Busche, T., Kalinowski, J.: Characterization of Bacterial Transcriptional Regulatory Networks in Escherichia coli through Genome-Wide In Vitro Run-Off Transcription/RNA-seq (ROSE). Microorganisms. 11, : 1388 (2023).
    PUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint
     
  • [15]
    2023 | Bielefelder E-Dissertation | PUB-ID: 2981158 OA
    Brandt, D.: Advanced genome and epigenome analyses of viruses from different domains of life. Universität Bielefeld, Bielefeld (2023).
    PUB | PDF
     
  • [14]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2967684 OA
    Behle, A., Dietsch, M., Goldschmidt, L., Murugathas, W., Berwanger, L.C., Burmester, J., Yao, L., Brandt, D., Busche, T., Kalinowski, J., Hudson, E.P., Ebenhöh, O., Axmann, I.M., Machné, R.: Manipulation of topoisomerase expression inhibits cell division but not growth and reveals a distinctive promoter structure in . Nucleic Acids Research. : gkac1132 (2022).
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [13]
    2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2966624 OA
    Hertel, O., Neuss, A., Busche, T., Brandt, D., Kalinowski, J., Bahnemann, J., Noll, T.: Enhancing stability of recombinant CHO cells by CRISPR/Cas9-mediated site-specific integration into regions with distinct histone modifications. Frontiers in Bioengineering and Biotechnology. 10, (2022).
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [12]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2957501 OA
    Brandt, D., Simunovic, M., Busche, T., Haak, M., Belmann, P., Jünemann, S., Schulz, T., Klages, L.J., Vinke, S., Beckstette, M., Pohl, E., Scherer, C., Sczyrba, A., Kalinowski, J.: Multiple Occurrences of a 168-Nucleotide Deletion in SARS-CoV-2 ORF8, Unnoticed by Standard Amplicon Sequencing and Variant Calling Pipelines. Viruses. 13, : 1870 (2021).
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [11]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956600
    Schaffert, L., Ruwe, M., Milse, J., Hanuschka, K., Ortseifen, V., Droste, J., Brandt, D., Schlüter, L., Kutter, Y., Vinke, S., Viehöfer, P., Jacob, L., Lübke, N.-C., Schulte-Berndt, E., Hain, C., Linder, M., Schmidt, P., Wollenschläger, L., Luttermann, T., Thieme, E., Hassa, J., Haak, M., Wittchen, M., Mentz, A., Persicke, M., Busche, T., Rückert, C.: Classification of three corynebacterial strains isolated from a small paddock in North Rhine-Westphalia: proposal of Corynebacterium kalinowskii sp. nov., Corynebacterium comes sp. nov. and Corynebacterium occultum sp. nov. International Journal of Systematic and Evolutionary Microbiology. 71, (2021).
    PUB | DOI | WoS | PubMed | Europe PMC | GenBank
     
  • [10]
    2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2955512
    Aevarsson, A., Kaczorowska, A.-K., Adalsteinsson, B.T., Ahlqvist, J., Al-Karadaghi, S., Altenbuchner, J., Arsin, H., Atlasson, U.A., Brandt, D., Cichowicz-Cieslak, M., Cornish, K.A.S., Courtin, J., Dabrowski, S., Dahle, H., Djeffane, S., Dorawa, S., Dusaucy, J., Enault, F., Fedoy, A.-E., Freitag-Pohl, S., Fridjonsson, O.H., Galiez, C., Glomsaker, E., Guerin, M., Gundeso, S.E., Gudmundsdottir, E.E., Gudmundsson, H., Hakansson, M., Henke, C., Helleux, A., Henriksen, J.R., Hjorleifdottir, S., Hreggvidsson, G.O., Jasilionis, A., Jochheim, A., Jonsdottir, I., Jonsdottir, L.B., Jurczak-Kurek, A., Kaczorowski, T., Kalinowski, J., Kozlowski, L.P., Krupovic, M., Kwiatkowska-Semrau, K., Lanes, O., Lange, J., Lebrat, J., Linares-Pasten, J., Liu, Y., Lorentsen, S.A., Luttermann, T., Mas, T., Merre, W., Mirdita, M., Morzywolek, A., Ndela, E.O., Karlsson, E.N., Olgudottir, E., Pedersen, C., Perler, F., Petursdottir, S.K., Plotka, M., Pohl, E., Prangishvili, D., Ray, J.L., Reynisson, B., Robertsdottir, T., Sandaa, R.-A., Sczyrba, A., Skirnisdottir, S., Soding, J., Solstad, T., Steen, I.H., Stefansson, S.K., Steinegger, M., Overa, K.S., Striberny, B., Svensson, A., Szadkowska, M., Tarrant, E.J., Terzian, P., Tourigny, M., van den Bergh, T., Vanhalst, J., Vincent, J., Vroling, B., Walse, B., Wang, L., Watzlawick, H., Welin, M., Werbowy, O., Wons, E., Zhang, R.: Going to extremes - a metagenomic journey into the dark matter of life. FEMS microbiology letters. : fnab067 (2021).
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [9]
    2021 | Zeitschriftenaufsatz | Angenommen | PUB-ID: 2956159
    Medvedeva, S., Brandt, D., Cvirkaite-Krupovic, V., Liu, Y., Severinov, K., Ishino, S., Ishino, Y., Prangishvili, D., Kalinowski, J., Krupovic, M.: New insights into the diversity and evolution of the archaeal mobilome from three complete genomes of Saccharolobus shibatae. Environmental microbiology. (Accepted).
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [8]
    2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955919
    Schmitz, L.M., Hageneier, F., Rosenthal, K., Busche, T., Brandt, D., Kalinowski, J., Lutz, S.: Recombinant expression and characterization of novel P450s from Actinosynnema mirum. Bioorganic & medicinal chemistry. 42, : 116241 (2021).
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [7]
    2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2951141
    Blanc-Mathieu, R., Dahle, H., Hofgaard, A., Brandt, D., Ban, H., Kalinowski, J., Ogata, H., Sandaa, R.-A.: A persistent giant algal virus, with a unique morphology, encodes an unprecedented number of genes involved in energy metabolism. Journal of virology. (2021).
    PUB | DOI | WoS | PubMed | Europe PMC
     
  • [6]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946260 OA
    Radukic, M., Brandt, D., Haak, M., Müller, K., Kalinowski, J.: Nanopore sequencing of native adeno-associated virus (AAV) single-stranded DNA using a transposase-based rapid protocol. NAR Genomics and Bioinformatics. 2, : lqaa074 (2020).
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [5]
    2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2946299 OA
    Kreienbaum, M., Dörrich, A.K., Brandt, D., Schmid, N.E., Leonhard, T., Hager, F., Brenzinger, S., Hahn, J., Glatter, T., Ruwe, M., Briegel, A., Kalinowski, J., Thormann, K.M.: Isolation and Characterization of Shewanella Phage Thanatos Infecting and Lysing Shewanella oneidensis and Promoting Nascent Biofilm Formation. Frontiers in Microbiology. 11, : 573260 (2020).
    PUB | PDF | DOI | WoS | PubMed | Europe PMC
     
  • [4]
    2020 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2943812
    Radukic, M., Brandt, D., Haak, M., Kalinowski, J., Müller, K.: Long-Read Characterization of Adeno-Associated Virus Packaged DNA by Direct Nanopore Sequencing Reveals Genome Fusions and Recombination between Genomes and Producer Plasmids. MOLECULAR THERAPY. 28, p. 398-399. Cell Press, Cambridge (2020).
    PUB | WoS
     
  • [3]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2938413 OA
    Schaffert, L., Schneiker-Bekel, S., Dymek, S., Droste, J., Persicke, M., Busche, T., Brandt, D., Pühler, A., Kalinowski, J.: Essentiality of the Maltase AmlE in Maltose Utilization and Its Transcriptional Regulation by the Repressor AmlR in the Acarbose-Producing Bacterium Actinoplanes sp. SE50/110. Frontiers in Microbiology. 10, : 2448 (2019).
    PUB | Dateien verfügbar | DOI | Download (ext.) | WoS | PubMed | Europe PMC | EBI - ENA Project
     
  • [2]
    2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936439 OA
    Schaffert, L., März, C., Burkhardt, L., Droste, J., Brandt, D., Busche, T., Rosen, W., Schneiker-Bekel, S., Persicke, M., Pühler, A., Kalinowski, J.: Evaluation of vector systems and promoters for overexpression of the acarbose biosynthesis gene acbC in Actinoplanes sp. SE50/110. Microbial Cell Factories. 18, : 114 (2019).
    PUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
     
  • [1]
    2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935511
    Liu, Y., Brandt, D., Ishino, S., Ishino, Y., Koonin, E.V., Kalinowski, J., Krupovic, M., Prangishvili, D.: New archaeal viruses discovered by metagenomic analysis of viral communities in enrichment cultures. Environmental Microbiology. 21, 2002-2014 (2018).
    PUB | DOI | WoS | PubMed | Europe PMC
     

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