26 Publications

Mark all

[26]
2017 | Journal Article | PUB-ID: 2914105
Systems and synthetic biology perspective of the versatile plant-pathogenic and polysaccharide-producing bacterium Xanthomonas campestris
Schatschneider S, Schneider J, Blom J, Letisse F, Niehaus K, Goesmann A, Vorhölter F-J (2017)
MICROBIOLOGY-SGM 163(8): 1117-1144.
PUB | DOI | WoS | PubMed | Europe PMC
 
[25]
2016 | Conference Abstract | PUB-ID: 2905827
Sugar Beet BeetMap-3, and Steps to Improve the Genome Assembly and Genome Sequence Annotation (W875)
Weisshaar B, Himmelbauer H, Schmidt T, Holtgräwe D, Minoche AE, Dohm J, Stracke R, Zakrzewski F, Parol-Kryger R, Stadermann KB, Schneider J, et al. (2016)
Presented at the Plant and Animal Genome XXIV Conference, San Diego, USA.
PUB | PDF
 
[24]
2015 | Journal Article | PUB-ID: 2764063
Exploiting single-molecule transcript sequencing for eukaryotic gene prediction
Minoche AE, Dohm JC, Schneider J, Holtgräwe D, Viehöver P, Montfort M, Rosleff Sörensen T, Weisshaar B, Himmelbauer H (2015)
Genome Biology 16: 184.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[23]
2015 | Journal Article | PUB-ID: 2782605
The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms
Rupp O, Brinkrolf K, Buerth C, Kunigo M, Schneider J, Jaenicke S, Goesmann A, Pühler A, Jaeger K-E, Ernst JF (2015)
Journal of Biotechnology 211: 20-30.
PUB | DOI | WoS | PubMed | Europe PMC
 
[22]
2014 | Journal Article | PUB-ID: 2696778
Genome-wide identification and characterisation of R2R3-MYB genes in sugar beet ( Beta vulgaris )
Stracke R, Holtgräwe D, Schneider J, Pucker B, Rosleff Sörensen T, Weisshaar B (2014)
BMC Plant Biology 14(1): 249.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[21]
2014 | Journal Article | PUB-ID: 2699085
Reliable In Silico Identification of Sequence Polymorphisms and Their Application for Extending the Genetic Map of Sugar Beet (Beta vulgaris)
Holtgräwe D, Rosleff Sörensen T, Viehöver P, Schneider J, Schulz B, Borchardt D, Kraft T, Himmelbauer H, Weisshaar B (2014)
PLoS ONE 9(10): e110113.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[20]
2013 | Journal Article | PUB-ID: 2650913
Genome sequence and analysis of methylotrophic yeast Hansenula polymorpha DL1
Ravin NV, Eldarov MA, Kadnikov VV, Beletsky AV, Schneider J, Mardanova ES, Smekalova EM, Zvereva MI, Dontsova OA, Mardanov AV, Skryabin KG (2013)
BMC Genomics 14: 837.
PUB | DOI | WoS | PubMed | Europe PMC
 
[19]
2013 | Journal Article | PUB-ID: 2558914 PUB | DOI | WoS | PubMed | Europe PMC
 
[18]
2013 | Journal Article | PUB-ID: 2634390
Quantification of Förster resonance energy transfer by monitoring sensitized emission in living plant cells
Müller S, Galliardt H, Schneider J, Barisas BG, Seidel T (2013)
Frontiers in Plant Science 4: 413.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
 
[16]
2012 | Journal Article | PUB-ID: 2474002
Genome sequence of Wickerhamomyces anomalus DSM 6766 reveals genetic basis of biotechnologically important antimicrobial activities
Schneider J, Rupp O, Trost E, Jaenicke S, Passoth V, Goesmann A, Tauch A, Brinkrolf K (2012)
FEMS Yeast Research 12(3): 382-386.
PUB | DOI | WoS | PubMed | Europe PMC
 
[15]
2012 | Journal Article | PUB-ID: 2518300
Draft genome sequence of Corynebacterium bovis DSM 20582, which causes clinical mastitis in dairy cows
Schröder J, Glaub A, Schneider J, Trost E, Tauch A (2012)
Journal of Bacteriology 194(16): 4437.
PUB | DOI | WoS | PubMed | Europe PMC
 
[14]
2012 | Journal Article | PUB-ID: 2530885
Draft Genome Sequence of Turicella otitidis ATCC 51513, Isolated from Middle Ear Fluid from a Child with Otitis Media
Brinkrolf K, Schneider J, Knecht M, Rückert C, Tauch A (2012)
Journal of Bacteriology 194(21): 5968-5969.
PUB | DOI | WoS | PubMed | Europe PMC
 
[13]
2012 | Journal Article | PUB-ID: 2544774
Draft Genome Sequence of Wickerhamomyces ciferrii NRRL Y-1031 F-60-10
Schneider J, Andrea H, Blom J, Jaenicke S, Rückert C, Schorsch C, Szczepanowski R, Farwick M, Goesmann A, Pühler A, Schaffer S, et al. (2012)
Eukaryotic Cell 11(12): 1582-1583.
PUB | DOI | WoS | PubMed | Europe PMC
 
[12]
2012 | Journal Article | PUB-ID: 2498160
Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient
Schröder J, Maus I, Meyer K, Wördemann S, Blom J, Jaenicke S, Schneider J, Trost E, Tauch A (2012)
BMC Genomics 13(1): 141.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[11]
2011 | Journal Article | PUB-ID: 2317371
High-quality genome sequence of Pichia pastoris CBS7435
Küberl A, Schneider J, Thallinger GG, Anderl I, Wibberg D, Hajek T, Jaenicke S, Brinkrolf K, Goesmann A, Szczepanowski R, Pühler A, et al. (2011)
Journal of Biotechnology 154(4): 312-320.
PUB | DOI | WoS | PubMed | Europe PMC
 
[10]
2011 | Journal Article | PUB-ID: 2354752
Comparative analysis of two complete Corynebacterium ulcerans genomes and detection of candidate virulence factors
Trost E, Al-Dilaimi A, Papavasiliou P, Schneider J, Viehöver P, Burkovski A, Soares SC, Almeida SS, Dorella FA, Miyoshi A, Azevedo V, et al. (2011)
BMC Genomics 12(1): 383.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[9]
2011 | Journal Article | PUB-ID: 2473990
Negative transcriptional control of biotin metabolism genes by the TetR-type regulator BioQ in biotin-auxotrophic Corynebacterium glutamicum ATCC 13032
Brune I, Götker S, Schneider J, Rodionov DA, Tauch A (2011)
Journal of Biotechnology 159(3): 225-234.
PUB | DOI | WoS | PubMed | Europe PMC
 
[8]
2011 | Journal Article | PUB-ID: 2326445
RAPYD - Rapid Annotation Platform for Yeast Data
Schneider J, Blom J, Jaenicke S, Linke B, Brinkrolf K, Neuweger H, Tauch A, Goesmann A (2011)
Journal of Biotechnology 155(1): 118-126.
PUB | DOI | WoS | PubMed | Europe PMC
 
[7]
2011 | Journal Article | PUB-ID: 2396576
Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing
Becker J, Hackel M, Jakobi T, Rupp O, Schneider J, Szczepanowski R, Bekel T, Borth N, Goesmann A, Grillari J, Kaltschmidt C, et al. (2011)
Journal of Biotechnology 156(3): 227-235.
PUB | DOI | WoS | PubMed | Europe PMC
 
[6]
2010 | Journal Article | PUB-ID: 1785275
Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion
Trost E, Götker S, Schneider J, Schneiker-Bekel S, Szczepanowski R, Tilker A, Viehöver P, Arnold W, Bekel T, Blom J, Gartemann K-H, et al. (2010)
BMC Genomics 11(1): 91.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[5]
2010 | Journal Article | PUB-ID: 1966439
The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into gene-regulatory networks contributing to virulence
Trost E, Ott L, Schneider J, Schröder J, Jaenicke S, Goesmann A, Husemann P, Stoye J, Alves Dorella F, Souza Rocha F, de Castro Soares S, et al. (2010)
BMC Genomics 11(1): 728.
PUB | DOI | WoS | PubMed | Europe PMC
 
[4]
2010 | Journal Article | PUB-ID: 1929692
CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks
Schneider J, Vorhölter F-J, Trost E, Blom J, Musa YR, Neuweger H, Niehaus K, Schatschneider S, Tauch A, Goesmann A (2010)
Genetics and Molecular Research 9(3): 1660-1672.
PUB | DOI | WoS | PubMed | Europe PMC
 
[3]
2009 | Journal Article | PUB-ID: 1783813
Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example
Neuweger H, Persicke M, Albaum S, Bekel T, Dondrup M, Hüser AT, Winnebald J, Schneider J, Kalinowski J, Goesmann A (2009)
BMC Systems Biology 3(1): 82.
PUB | PDF | DOI | PubMed | Europe PMC
 
[2]
2009 | Journal Article | PUB-ID: 2397394
Entschlüsselung mikrobieller Genomsequenzen im Schnellverfahren
Goesmann A, Schneider J, Trost E, Tauch A (2009)
BIOspektrum 15(3): 279-281.
PUB
 
[1]
2008 | Journal Article | PUB-ID: 1585939
Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids
Tauch A, Schneider J, Szczepanowski R, Tilker A, Viehöver P, Gartemann K-H, Arnold W, Blom J, Brinkrolf K, Brune I, Goetker S, et al. (2008)
Journal of Biotechnology 136(1-2): 22-30.
PUB | DOI | WoS | PubMed | Europe PMC
 

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26 Data Publications

Mark all

[26]
2017 | Journal Article | PUB-ID: 2914105
Systems and synthetic biology perspective of the versatile plant-pathogenic and polysaccharide-producing bacterium Xanthomonas campestris
Schatschneider S, Schneider J, Blom J, Letisse F, Niehaus K, Goesmann A, Vorhölter F-J (2017)
MICROBIOLOGY-SGM 163(8): 1117-1144.
PUB | DOI | WoS | PubMed | Europe PMC
 
[25]
2016 | Conference Abstract | PUB-ID: 2905827
Sugar Beet BeetMap-3, and Steps to Improve the Genome Assembly and Genome Sequence Annotation (W875)
Weisshaar B, Himmelbauer H, Schmidt T, Holtgräwe D, Minoche AE, Dohm J, Stracke R, Zakrzewski F, Parol-Kryger R, Stadermann KB, Schneider J, et al. (2016)
Presented at the Plant and Animal Genome XXIV Conference, San Diego, USA.
PUB | PDF
 
[24]
2015 | Journal Article | PUB-ID: 2764063
Exploiting single-molecule transcript sequencing for eukaryotic gene prediction
Minoche AE, Dohm JC, Schneider J, Holtgräwe D, Viehöver P, Montfort M, Rosleff Sörensen T, Weisshaar B, Himmelbauer H (2015)
Genome Biology 16: 184.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[23]
2015 | Journal Article | PUB-ID: 2782605
The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms
Rupp O, Brinkrolf K, Buerth C, Kunigo M, Schneider J, Jaenicke S, Goesmann A, Pühler A, Jaeger K-E, Ernst JF (2015)
Journal of Biotechnology 211: 20-30.
PUB | DOI | WoS | PubMed | Europe PMC
 
[22]
2014 | Journal Article | PUB-ID: 2696778
Genome-wide identification and characterisation of R2R3-MYB genes in sugar beet ( Beta vulgaris )
Stracke R, Holtgräwe D, Schneider J, Pucker B, Rosleff Sörensen T, Weisshaar B (2014)
BMC Plant Biology 14(1): 249.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[21]
2014 | Journal Article | PUB-ID: 2699085
Reliable In Silico Identification of Sequence Polymorphisms and Their Application for Extending the Genetic Map of Sugar Beet (Beta vulgaris)
Holtgräwe D, Rosleff Sörensen T, Viehöver P, Schneider J, Schulz B, Borchardt D, Kraft T, Himmelbauer H, Weisshaar B (2014)
PLoS ONE 9(10): e110113.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[20]
2013 | Journal Article | PUB-ID: 2650913
Genome sequence and analysis of methylotrophic yeast Hansenula polymorpha DL1
Ravin NV, Eldarov MA, Kadnikov VV, Beletsky AV, Schneider J, Mardanova ES, Smekalova EM, Zvereva MI, Dontsova OA, Mardanov AV, Skryabin KG (2013)
BMC Genomics 14: 837.
PUB | DOI | WoS | PubMed | Europe PMC
 
[19]
2013 | Journal Article | PUB-ID: 2558914 PUB | DOI | WoS | PubMed | Europe PMC
 
[18]
2013 | Journal Article | PUB-ID: 2634390
Quantification of Förster resonance energy transfer by monitoring sensitized emission in living plant cells
Müller S, Galliardt H, Schneider J, Barisas BG, Seidel T (2013)
Frontiers in Plant Science 4: 413.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
 
[16]
2012 | Journal Article | PUB-ID: 2474002
Genome sequence of Wickerhamomyces anomalus DSM 6766 reveals genetic basis of biotechnologically important antimicrobial activities
Schneider J, Rupp O, Trost E, Jaenicke S, Passoth V, Goesmann A, Tauch A, Brinkrolf K (2012)
FEMS Yeast Research 12(3): 382-386.
PUB | DOI | WoS | PubMed | Europe PMC
 
[15]
2012 | Journal Article | PUB-ID: 2518300
Draft genome sequence of Corynebacterium bovis DSM 20582, which causes clinical mastitis in dairy cows
Schröder J, Glaub A, Schneider J, Trost E, Tauch A (2012)
Journal of Bacteriology 194(16): 4437.
PUB | DOI | WoS | PubMed | Europe PMC
 
[14]
2012 | Journal Article | PUB-ID: 2530885
Draft Genome Sequence of Turicella otitidis ATCC 51513, Isolated from Middle Ear Fluid from a Child with Otitis Media
Brinkrolf K, Schneider J, Knecht M, Rückert C, Tauch A (2012)
Journal of Bacteriology 194(21): 5968-5969.
PUB | DOI | WoS | PubMed | Europe PMC
 
[13]
2012 | Journal Article | PUB-ID: 2544774
Draft Genome Sequence of Wickerhamomyces ciferrii NRRL Y-1031 F-60-10
Schneider J, Andrea H, Blom J, Jaenicke S, Rückert C, Schorsch C, Szczepanowski R, Farwick M, Goesmann A, Pühler A, Schaffer S, et al. (2012)
Eukaryotic Cell 11(12): 1582-1583.
PUB | DOI | WoS | PubMed | Europe PMC
 
[12]
2012 | Journal Article | PUB-ID: 2498160
Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient
Schröder J, Maus I, Meyer K, Wördemann S, Blom J, Jaenicke S, Schneider J, Trost E, Tauch A (2012)
BMC Genomics 13(1): 141.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[11]
2011 | Journal Article | PUB-ID: 2317371
High-quality genome sequence of Pichia pastoris CBS7435
Küberl A, Schneider J, Thallinger GG, Anderl I, Wibberg D, Hajek T, Jaenicke S, Brinkrolf K, Goesmann A, Szczepanowski R, Pühler A, et al. (2011)
Journal of Biotechnology 154(4): 312-320.
PUB | DOI | WoS | PubMed | Europe PMC
 
[10]
2011 | Journal Article | PUB-ID: 2354752
Comparative analysis of two complete Corynebacterium ulcerans genomes and detection of candidate virulence factors
Trost E, Al-Dilaimi A, Papavasiliou P, Schneider J, Viehöver P, Burkovski A, Soares SC, Almeida SS, Dorella FA, Miyoshi A, Azevedo V, et al. (2011)
BMC Genomics 12(1): 383.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[9]
2011 | Journal Article | PUB-ID: 2473990
Negative transcriptional control of biotin metabolism genes by the TetR-type regulator BioQ in biotin-auxotrophic Corynebacterium glutamicum ATCC 13032
Brune I, Götker S, Schneider J, Rodionov DA, Tauch A (2011)
Journal of Biotechnology 159(3): 225-234.
PUB | DOI | WoS | PubMed | Europe PMC
 
[8]
2011 | Journal Article | PUB-ID: 2326445
RAPYD - Rapid Annotation Platform for Yeast Data
Schneider J, Blom J, Jaenicke S, Linke B, Brinkrolf K, Neuweger H, Tauch A, Goesmann A (2011)
Journal of Biotechnology 155(1): 118-126.
PUB | DOI | WoS | PubMed | Europe PMC
 
[7]
2011 | Journal Article | PUB-ID: 2396576
Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing
Becker J, Hackel M, Jakobi T, Rupp O, Schneider J, Szczepanowski R, Bekel T, Borth N, Goesmann A, Grillari J, Kaltschmidt C, et al. (2011)
Journal of Biotechnology 156(3): 227-235.
PUB | DOI | WoS | PubMed | Europe PMC
 
[6]
2010 | Journal Article | PUB-ID: 1785275
Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion
Trost E, Götker S, Schneider J, Schneiker-Bekel S, Szczepanowski R, Tilker A, Viehöver P, Arnold W, Bekel T, Blom J, Gartemann K-H, et al. (2010)
BMC Genomics 11(1): 91.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[5]
2010 | Journal Article | PUB-ID: 1966439
The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into gene-regulatory networks contributing to virulence
Trost E, Ott L, Schneider J, Schröder J, Jaenicke S, Goesmann A, Husemann P, Stoye J, Alves Dorella F, Souza Rocha F, de Castro Soares S, et al. (2010)
BMC Genomics 11(1): 728.
PUB | DOI | WoS | PubMed | Europe PMC
 
[4]
2010 | Journal Article | PUB-ID: 1929692
CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks
Schneider J, Vorhölter F-J, Trost E, Blom J, Musa YR, Neuweger H, Niehaus K, Schatschneider S, Tauch A, Goesmann A (2010)
Genetics and Molecular Research 9(3): 1660-1672.
PUB | DOI | WoS | PubMed | Europe PMC
 
[3]
2009 | Journal Article | PUB-ID: 1783813
Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example
Neuweger H, Persicke M, Albaum S, Bekel T, Dondrup M, Hüser AT, Winnebald J, Schneider J, Kalinowski J, Goesmann A (2009)
BMC Systems Biology 3(1): 82.
PUB | PDF | DOI | PubMed | Europe PMC
 
[2]
2009 | Journal Article | PUB-ID: 2397394
Entschlüsselung mikrobieller Genomsequenzen im Schnellverfahren
Goesmann A, Schneider J, Trost E, Tauch A (2009)
BIOspektrum 15(3): 279-281.
PUB
 
[1]
2008 | Journal Article | PUB-ID: 1585939
Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids
Tauch A, Schneider J, Szczepanowski R, Tilker A, Viehöver P, Gartemann K-H, Arnold W, Blom J, Brinkrolf K, Brune I, Goetker S, et al. (2008)
Journal of Biotechnology 136(1-2): 22-30.
PUB | DOI | WoS | PubMed | Europe PMC
 

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