21 Publikationen
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2722420Shoshi, Alban, Hoppe, Tobias, Kormeier, Benjamin, Ogultarhan, Venus, and Hofestädt, Ralf. “GraphSAW: A web-based system for graphical analysis of drug interactions and side effects using pharmaceutical and molecular data”. BMC Medical Informatics and Decision Making 15.1 (2015): 15.PUB | PDF | DOI | WoS | PubMed | Europe PMC
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2709397Shoshi, Alban, Ogultarhan, Venus, Hoppe, Tobias, Kormeier, Benjamin, Müller, Ulrich, and Hofestädt, Ralf. “Identifying adverse drug reactions and drug-induced diseases using network-based drug mapping”. Journal of Bioinformatics and Computational Biology 13.1 (2015): 1540007.PUB | DOI | WoS | PubMed | Europe PMC
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2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704619Wallmeyer, Thorben, Sommer, Björn, and Kormeier, Benjamin. “Towards Pathway Prediction and Subcellular Localization by using FraMeTex (Workshop Abstract)”. Proceedings of the CELLmicrocosmos neXt workshop. Ed. Björn Sommer. Bielefeld: Bielefeld University, 2014. 18-19.PUB | PDF | DOI
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685732Brinkrolf, Christoph, Janowski, Sebastian Jan, Kormeier, Benjamin, Lewinski, Martin, Hippe, Klaus, Borck, Daniela, and Hofestädt, Ralf. “VANESA - A Software Application for the Visualization and Analysis of Networks in System Biology Applications”. Journal of Integrative Bioinformatics 11.2 (2014): 239.PUB | DOI | PubMed | Europe PMC
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560817Sommer, Björn, Kormeier, Benjamin, Demenkov, Pavel S., Arrigo, Patrizio, Hippe, Klaus, Ates, Özgür, Kochetov, Alexey V., Ivanisenko, Vladimir A., Kolchanov, Nikolay A., and Hofestädt, Ralf. “Subcellular localization charts: a new visual methodology for the semi-automatic localization of protein-related data sets”. Journal of Bioinformatics and Computational Biology 11.01 (2013): 1340005.PUB | DOI | WoS | PubMed | Europe PMC
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901699Hofestädt, Ralf, Kormeier, Benjamin, Lange, Matthias, Schreiber, Falk, Sommer, Björn, and Weise, Stefan. “Editorial: JIBtools - a Strategy to Reduce the Bioinformatics Analysis Gap”. Journal of Integrative Bioinformatics 10.1 (2013): 226.PUB
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2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2374711Lange, Matthias, Chen, Jinbo, Borck, Daniela, Colmsee, Christian, Hippe, Klaus, Kormeier, Benjamin, Weise, Stefan, and Scholz, Uwe. “Building Information Retrieval Portals using the lailaps search engine”. Proceedings of the 6th International Symposium on Health Informatics and Bioinformatics. 2011. 90.PUB
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2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2374702Lange, Matthias, Chen, Jinbo, Borck, Daniela, Colmsee, Christian, Hippe, Klaus, Kormeier, Benjamin, Weise, Stefan, and Scholz, Uwe. “The LAILAPS Information Retrieval Portal as Scalable and Integrative Database Query Endpoint”. Proceedings of the 6th International Symposium on Health Informatics and Bioinformatics. 2011. 37.PUB
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374720Hippe, Klaus, Kormeier, Benjamin, Janowski, Sebastian Jan, Töpel, Thoralf, and Hofestädt, Ralf. “DAWIS-M.D. 2.0 - A Data Warehouse Information System for Metabolic Data”. Proceedings of the 7th International Symposium on Integrative Bioinformatics. 2011.PUB
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326407Chen, Ming, Hariharaputran, Sridhar, Hofestädt, Ralf, Kormeier, Benjamin, and Spangardt, Sarah. “Petri net models for the semi-automatic construction of large scale biological networks”. Natural Computing 10.3 (2011): 1077-1097.PUB | DOI | WoS
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2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2290156Janowski, Sebastian Jan, Kormeier, Benjamin, Töpel, Thoralf, Hippe, Klaus, Hofestädt, Ralf, Willassen, Nils, Friesen, Rafael, Rubert, Sebastian, Borck, Daniela, Haugen, Peik, and Chen, Ming. “Modeling of Cell-to-Cell Communication Processes with Petri Nets Using the Example of Quorum Sensing”. Biological Petri Nets. Ed. Edgar Wingender. Amsterdam: IOS Press, 2011.Vol. 162. Studies in health technology and informatics. 182-203.PUB | PubMed | Europe PMC
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2406168Kormeier, Benjamin, Hippe, Klaus, Töpel, Thoralf, and Hofestädt, Ralf. “CardioVINEdb: a data warehouse approach for integration of life science data in cardiovascular diseases”. Journal of Integrative Bioinformatics 7.1 (2010): 142.PUB | DOI | PubMed | Europe PMC
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1945096Kormeier, Benjamin, Hippe, Klaus, Arrigo, Patrizio, Töpel, Thoralf, Janowski, Sebastian Jan, and Hofestädt, Ralf. “Reconstruction of biological networks based on life science data integration”. Journal of Integrative Bioinformatics 7.2 (2010): 3-8.PUB | DOI | PubMed | Europe PMC
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2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2901780Hippe, Klaus, Kormeier, Benjamin, Töpel, Thoralf, Janowski, Sebastian Jan, and Hofestädt, Ralf. “DAWIS-M.D. - A Data Warehouse System for Metabolic Data”. Informatik 2010: Service Science - neue Perspektiven für die Informatik. Bonn: Ges. für Informatik, 2010.Vol. 176. LNI. 720-725.PUB
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2374757Sommer, Björn, Tiys, E. S, Kormeier, Benjamin, Hippe, Klaus, Janowski, Sebastian Jan, Ivanisenko, T. V, Bragin, A. O, Arrigo, P., Demenkov, P. S, Kochetov, A. V, Ivanisenko, V.A., Kolchanov, N. A., and Hofestädt, Ralf. “Visualization and Analysis of a Cardio Vascular Disease-and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches”. Journal of Integrative Bioinformatics 7.1 (2010): 148.PUB | DOI | PubMed | Europe PMC
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1960746Janowski, Sebastian Jan, Kormeier, Benjamin, Töpel, Thoralf, Hippe, Klaus, Hofestädt, Ralf, Willassen, Nils, Friesen, Rafael, Rubert, Sebastian, Borck, Daniela, Haugen, Peik, and Chen, Ming. “Modeling of cell-cell communication processes with Petri nets using the example of quorum sensing”. In Silico Biology 10.Special Issue: Petri Net Applications in Molecular Biology (2010): 27-48.PUB
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2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2002601Sommer, Björn, Künsemöller, Jörn, Sand, Norbert, Husemann, Arne, Rumming, Madis, and Kormeier, Benjamin. “CELLMICROCOSMOS 4.1, An Interactive Approach to Integrating Spatially Localized Metabolic Networks into a Virtual 3D Cell Environment.”. Presented at the BIOINFORMATICS 2010, Valencia, Spain, INSTICC - Institute for Systems and Technologies of Information, Control and Communication, 2010.PUB
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2009 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2408628Kormeier, Benjamin, Hippe, Klaus, Töpel, Thoralf, and Hofestädt, Ralf. “CARDIOVINEdb: a data warehouse approach for integration of life science in cardiovascular diseases”. Im Focus das Leben. 39. Jahrestagung der Gesellschaft für Informatik e.V. (GI), 28.9. bis 2.10.2009, Universität zu Lübeck. Ed. Stefan Fischer, Erik Maehle, and Rüdiger Reischuk. Bonn: Gesellschaft für Informatik (GI), 2009. 704-708.PUB | Download (ext.)
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1945955Töpel, Thoralf, Kormeier, Benjamin, Klassen, Andreas, and Hofestädt, Ralf. “BioDWH: a data warehouse kit for life science data integration”. Journal of Integrative Bioinformatics 5.2 (2008): 343-349.PUB | DOI | PubMed | Europe PMC