PUB - Publikationen an der Universität Bielefeld

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• [21]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2722420

  Shoshi, Alban, Hoppe, Tobias, Kormeier, Benjamin, Ogultarhan, Venus, and Hofestädt, Ralf. 2015. “GraphSAW: A web-based system for graphical analysis of drug interactions and side effects using pharmaceutical and molecular data”. BMC Medical Informatics and Decision Making 15 (1): 15.

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• [20]
  

  2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2709397

  Shoshi, Alban, Ogultarhan, Venus, Hoppe, Tobias, Kormeier, Benjamin, Müller, Ulrich, and Hofestädt, Ralf. 2015. “Identifying adverse drug reactions and drug-induced diseases using network-based drug mapping”. Journal of Bioinformatics and Computational Biology 13 (1): 1540007.

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• [19]
  

  2014 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2704619

  Wallmeyer, Thorben, Sommer, Björn, and Kormeier, Benjamin. 2014. “Towards Pathway Prediction and Subcellular Localization by using FraMeTex (Workshop Abstract)”. In Proceedings of the CELLmicrocosmos neXt workshop, ed. Björn Sommer, 18-19. Bielefeld: Bielefeld University.

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• [18]
  

  2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685732

  Brinkrolf, Christoph, Janowski, Sebastian Jan, Kormeier, Benjamin, Lewinski, Martin, Hippe, Klaus, Borck, Daniela, and Hofestädt, Ralf. 2014. “VANESA - A Software Application for the Visualization and Analysis of Networks in System Biology Applications”. Journal of Integrative Bioinformatics 11 (2): 239.

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• [17]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560817

  Sommer, Björn, Kormeier, Benjamin, Demenkov, Pavel S., Arrigo, Patrizio, Hippe, Klaus, Ates, Özgür, Kochetov, Alexey V., Ivanisenko, Vladimir A., Kolchanov, Nikolay A., and Hofestädt, Ralf. 2013. “Subcellular localization charts: a new visual methodology for the semi-automatic localization of protein-related data sets”. Journal of Bioinformatics and Computational Biology 11 (01): 1340005.

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• [16]
  

  2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901699

  Hofestädt, Ralf, Kormeier, Benjamin, Lange, Matthias, Schreiber, Falk, Sommer, Björn, and Weise, Stefan. 2013. “Editorial: JIBtools - a Strategy to Reduce the Bioinformatics Analysis Gap”. Journal of Integrative Bioinformatics 10 (1): 226.

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• [15]
  

  2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2374711

  Lange, Matthias, Chen, Jinbo, Borck, Daniela, Colmsee, Christian, Hippe, Klaus, Kormeier, Benjamin, Weise, Stefan, and Scholz, Uwe. 2011. “Building Information Retrieval Portals using the lailaps search engine”. In Proceedings of the 6th International Symposium on Health Informatics and Bioinformatics, 90.

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• [14]
  

  2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2374702

  Lange, Matthias, Chen, Jinbo, Borck, Daniela, Colmsee, Christian, Hippe, Klaus, Kormeier, Benjamin, Weise, Stefan, and Scholz, Uwe. 2011. “The LAILAPS Information Retrieval Portal as Scalable and Integrative Database Query Endpoint”. In Proceedings of the 6th International Symposium on Health Informatics and Bioinformatics, 37.

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• [13]
  

  2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374720

  Hippe, Klaus, Kormeier, Benjamin, Janowski, Sebastian Jan, Töpel, Thoralf, and Hofestädt, Ralf. 2011. “DAWIS-M.D. 2.0 - A Data Warehouse Information System for Metabolic Data”. In Proceedings of the 7th International Symposium on Integrative Bioinformatics.

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• [12]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326407

  Chen, Ming, Hariharaputran, Sridhar, Hofestädt, Ralf, Kormeier, Benjamin, and Spangardt, Sarah. 2011. “Petri net models for the semi-automatic construction of large scale biological networks”. Natural Computing 10 (3): 1077-1097.

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• [11]
  

  2011 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2290156

  Janowski, Sebastian Jan, Kormeier, Benjamin, Töpel, Thoralf, Hippe, Klaus, Hofestädt, Ralf, Willassen, Nils, Friesen, Rafael, et al. 2011. “Modeling of Cell-to-Cell Communication Processes with Petri Nets Using the Example of Quorum Sensing”. In Biological Petri Nets, ed. Edgar Wingender, 162:182-203. Studies in health technology and informatics. Amsterdam: IOS Press.

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• [10]
  

  2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2408602

  Kormeier, Benjamin, Hippe, Klaus, and Hofestädt, Ralf. 2011. “Data Warehouses in Bioinformatics: Integration of Molecular Biological Data”. it Information Technology 53 (5): 241-249.

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• [9]
  

  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2406168

  Kormeier, Benjamin, Hippe, Klaus, Töpel, Thoralf, and Hofestädt, Ralf. 2010. “CardioVINEdb: a data warehouse approach for integration of life science data in cardiovascular diseases”. Journal of Integrative Bioinformatics 7 (1): 142.

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• [8]
  

  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1945096

  Kormeier, Benjamin, Hippe, Klaus, Arrigo, Patrizio, Töpel, Thoralf, Janowski, Sebastian Jan, and Hofestädt, Ralf. 2010. “Reconstruction of biological networks based on life science data integration”. Journal of Integrative Bioinformatics 7 (2): 3-8.

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• [7]
  

  2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2901780

  Hippe, Klaus, Kormeier, Benjamin, Töpel, Thoralf, Janowski, Sebastian Jan, and Hofestädt, Ralf. 2010. “DAWIS-M.D. - A Data Warehouse System for Metabolic Data”. In Informatik 2010: Service Science - neue Perspektiven für die Informatik, 176:720-725. LNI. Bonn: Ges. für Informatik.

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• [6]
  

  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2374757

  Sommer, Björn, Tiys, E. S, Kormeier, Benjamin, Hippe, Klaus, Janowski, Sebastian Jan, Ivanisenko, T. V, Bragin, A. O, et al. 2010. “Visualization and Analysis of a Cardio Vascular Disease-and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches”. Journal of Integrative Bioinformatics 7 (1): 148.

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• [5]
  

  2010 | Bielefelder E-Dissertation | PUB-ID: 2301537

  Kormeier, Benjamin. 2010. Semi-automated reconstruction of biological networks based on a life science data warehouse. Bielefeld (Germany): Bielefeld University.

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• [4]
  

  2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1960746

  Janowski, Sebastian Jan, Kormeier, Benjamin, Töpel, Thoralf, Hippe, Klaus, Hofestädt, Ralf, Willassen, Nils, Friesen, Rafael, et al. 2010. “Modeling of cell-cell communication processes with Petri nets using the example of quorum sensing”. In Silico Biology 10 (Special Issue: Petri Net Applications in Molecular Biology): 27-48.

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• [3]
  

  2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2002601

  Sommer, Björn, Künsemöller, Jörn, Sand, Norbert, Husemann, Arne, Rumming, Madis, and Kormeier, Benjamin. 2010. “CELLMICROCOSMOS 4.1, An Interactive Approach to Integrating Spatially Localized Metabolic Networks into a Virtual 3D Cell Environment.”. Presented at the BIOINFORMATICS 2010, Valencia, Spain . INSTICC - Institute for Systems and Technologies of Information, Control and Communication.

  PUB
   
• [2]
  

  2009 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2408628

  Kormeier, Benjamin, Hippe, Klaus, Töpel, Thoralf, and Hofestädt, Ralf. 2009. “CARDIOVINEdb: a data warehouse approach for integration of life science in cardiovascular diseases”. In Im Focus das Leben. 39. Jahrestagung der Gesellschaft für Informatik e.V. (GI), 28.9. bis 2.10.2009, Universität zu Lübeck, ed. Stefan Fischer, Erik Maehle, and Rüdiger Reischuk, 704-708. Bonn: Gesellschaft für Informatik (GI).

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• [1]
  

  2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1945955

  Töpel, Thoralf, Kormeier, Benjamin, Klassen, Andreas, and Hofestädt, Ralf. 2008. “BioDWH: a data warehouse kit for life science data integration”. Journal of Integrative Bioinformatics 5 (2): 343-349.

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