Anika Winkler

awinkler@cebitec.uni-bielefeld.de
PEVZ-ID
37406548

72 Publikationen

Alle markieren

[72]
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2964659
psi-Footprinting approach for the identification of protein synthesis inhibitor producers
Handel F, Kulik A, Wex KW, Berscheid A, Saur JS, Winkler A, Wibberg D, Kalinowski J, Broetz-Oesterhelt H, Mast Y (2022)
NAR: Genomics and Bioinformatics 4(3): lqac055.
PUB | DOI | WoS | PubMed | Europe PMC
 
[71]
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956428
A Regulator Based "Semi-Targeted" Approach to Activate Silent Biosynthetic Gene Clusters
Mingyar E, Muhling L, Kulik A, Winkler A, Wibberg D, Kalinowski J, Blin K, Weber T, Wohlleben W, Stegmann E (2021)
International journal of molecular sciences 22(14): 7567.
PUB | DOI | WoS | PubMed | Europe PMC
 
[70]
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955526
Pseudomonas paraversuta sp. nov. isolated from refrigerated dry-aged beef.
Lick S, Wibberg D, Winkler A, Blom J, Grimmler C, Goesmann A, Kalinowski J, Krockel L (2021)
International journal of systematic and evolutionary microbiology 71(6).
PUB | DOI | WoS | PubMed | Europe PMC
 
[69]
2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2951146
Streptomyces dysideae sp. nov., isolated from a marine Mediterranean sponge Dysidea tupha.
Glaeser SP, Rückert C, Abdelmohsen UR, Winkler A, Blom J, Goesmann A, Kalinowski J, Hentschel U, Busse H-J, Kampfer P (2021)
International journal of systematic and evolutionary microbiology.
PUB | DOI | WoS | PubMed | Europe PMC
 
[68]
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950292 OA
Phytoplankton consortia as a blueprint for mutually beneficial eukaryote-bacteria ecosystems based on the biocoenosis of Botryococcus consortia
Blifernez-Klassen O, Klassen V, Wibberg D, Cebeci E, Henke C, Rückert C, Chaudhari S, Rupp O, Blom J, Winkler A, Al-Dilaimi A, et al. (2021)
Scientific Reports 11(1): 1726.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[67]
2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2949961
Global transcriptome analysis of Rhizobium favelukesii LPU83 in response to acid stress
Nilsson JF, Castellani LG, Draghi WO, Mogro EG, Wibberg D, Winkler A, Hansen LH, Schlüter A, Pühler A, Kalinowski J, Torres Tejerizo GA, et al. (2021)
FEMS Microbiology Ecology 97(1): fiaa235.
PUB | DOI | WoS | PubMed | Europe PMC
 
[66]
2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2948760
Genome sequence of Bradyrhizobium yuanmingense strain P10 130, a highly efficient nitrogen-fixing bacterium that could be used for Desmodium incanum inoculation.
Toniutti MA, Albicoro FJ, Castellani LG, Lopez Garcia SL, Fornasero LV, Zuber NE, Vera LM, Vacca C, Cafiero JH, Winkler A, Kalinowski J, et al. (2020)
Gene.
PUB | DOI | WoS | PubMed | Europe PMC
 
[65]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937242
Whole-Genome Sequence of Pseudoalteromonas sp. NC201, a Probiotic Strain for Litopenaeus stylirostris Hatcheries in New Caledonia
Sorieul L, Rückert C, Al-Dilaimi A, Winkler A, Kalinowski J, Pham D, Wabete N, Boulo V (2019)
Microbiology resource announcements 8(34): e00477-19.
PUB | DOI | WoS | PubMed | Europe PMC
 
[64]
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2938561
Pseudomonas bubulae sp. nov., isolated from beef.
Lick S, Krockel L, Wibberg D, Winkler A, Blom J, Goesmann A, Kalinowski J (2019)
International journal of systematic and evolutionary microbiology 70(1): 292-301.
PUB | DOI | WoS | PubMed | Europe PMC
 
[63]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936839 OA
Genetic Potential of the Biocontrol Agent Pseudomonas brassicacearum (Formerly P. trivialis) 3Re2-7 Unraveled by Genome Sequencing and Mining, Comparative Genomics and Transcriptomics
Nelkner J, Tejerizo GT, Hassa J, Lin TW, Witte J, Verwaaijen B, Winkler A, Bunk B, Spröer C, Overmann J, Grosch R, et al. (2019)
Genes 10(8): 601.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[62]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935556 OA
A comprehensive analysis of the Lactuca sativa, L. transcriptome during different stages of the compatible interaction with Rhizoctonia solani
Verwaaijen B, Wibberg D, Winkler A, Zrenner R, Bednarz H, Niehaus K, Grosch R, Pühler A, Schlüter A (2019)
Scientific Reports 9(1): 7221.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[61]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932964
Harvest of the Oleaginous Microalgae Scenedesmus obtusiusculus by Flocculation From Culture Based on Natural Water Sources
Bracharz F, Helmdach D, Aschenbrenner I, Funck N, Wibberg D, Winkler A, Bohnen F, Kalinowski J, Mehlmer N, Brueck TB (2018)
FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY 6: 200.
PUB | DOI | WoS | PubMed | Europe PMC
 
[60]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932979
Biodegradation of dispersed oil in natural seawaters from Western Greenland and a Norwegian fjord
Brakstad OG, Davies EJ, Ribicic D, Winkler A, Bronner U, Netzer R (2018)
POLAR BIOLOGY 41(12): 2435-2450.
PUB | DOI | WoS
 
[59]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920777
Binning Enables Efficient Host Genome Reconstruction in Cnidarian Holobionts
Celis JS, Wibberg D, Ramírez-Portilla C, Rupp O, Sczyrba A, Winkler A, Kalinowski J, Wilke T (2018)
GigaScience 7(7): giy075.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[58]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920680
Comparative genomics reveals phylogenetic distribution patterns of secondary metabolites in Amycolatopsis species
Adamek M, Alanjary M, Sales-Ortells H, Goodfellow M, Bull AT, Winkler A, Wibberg D, Kalinowski J, Ziemert N (2018)
BMC GENOMICS 19(1): 15.
PUB | DOI | WoS | PubMed | Europe PMC
 
[57]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930633
Oil type and temperature dependent biodegradation dynamics - Combining chemical and microbial community data through multivariate analysis
Ribicic D, McFarlin KM, Netzer R, Brakstad OG, Winkler A, Throne-Holst M, Storseth TR (2018)
BMC MICROBIOLOGY 18(1): 83.
PUB | DOI | WoS | PubMed | Europe PMC
 
[56]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919058
The secreted metabolome of Streptomyces chartreusis and implications for bacterial chemistry
Senges CHR, Al-Dilaimi A, Marchbank DH, Wibberg D, Winkler A, Haltli B, Nowrousian M, Kalinowski J, Kerr RG, Bandow JE (2018)
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 115(10): 2490-2495.
PUB | DOI | WoS | PubMed | Europe PMC
 
[55]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916925
Individual- and Species-Specific Skin Microbiomes in Three Different Estrildid Finch Species Revealed by 16S Amplicon Sequencing
Engel K, Sauer J, Jünemann S, Winkler A, Wibberg D, Kalinowski J, Tauch A, Caspers B (2018)
Microbial Ecology 76(2): 518-529.
PUB | DOI | WoS | PubMed | Europe PMC
 
[54]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918969 OA
Complete Genome Sequence of Streptomyces lavendulae subsp. lavendulae CCM 3239 (Formerly “Streptomyces aureofaciens CCM 3239”), a Producer of the Angucycline-Type Antibiotic Auricin
Busche T, Novakova R, Al'Dilaimi A, Homerova D, Feckova L, Rezuchova B, Mingyar E, Csolleiova D, Bekeova C, Winkler A, Sevcikova B, et al. (2018)
Genome Announcements 6(9): e00103-18.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[53]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917037
Assembly of the Lactuca sativa, L. cv. Tizian draft genome sequence reveals differences within major resistance complex 1 as compared to the cv. Salinas reference genome
Verwaaijen B, Wibberg D, Nelkner J, Gordin M, Rupp O, Winkler A, Bremges A, Blom J, Grosch R, Pühler A, Schlüter A (2018)
Journal of Biotechology 267: 12-18.
PUB | DOI | WoS | PubMed | Europe PMC
 
[52]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931970
Comparison of microbial community dynamics induced by distinct crude oil dispersions reveals compositional differences
Ribicic D, Netzer R, Winkler A, Brakstad OG (2018)
JOURNAL OF SEA RESEARCH 141: 112-118.
PUB | DOI | WoS
 
[51]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920334
Biodegradation of dispersed oil in seawater is not inhibited by a commercial oil spill dispersant
Brakstad OG, Ribicic D, Winkler A, Netzer R (2018)
MARINE POLLUTION BULLETIN 129(2): 555-561.
PUB | DOI | WoS | PubMed | Europe PMC
 
[50]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920701
Microbial communities in seawater from an Arctic and a temperate Norwegian fjord and their potentials for biodegradation of chemically dispersed oil at low seawater temperatures
Ribicic D, Netzer R, Winkler A, Brakstad OG (2018)
MARINE POLLUTION BULLETIN 129(1): 308-317.
PUB | DOI | WoS | PubMed | Europe PMC
 
[49]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920259
On the Enigma of Glutathione-Dependent Styrene Degradation in Gordonia rubripertincta CWB2
Heine T, Zimmerling J, Ballmann A, Kleeberg SB, Rückert C, Busche T, Winkler A, Kalinowski J, Poetsch A, Scholtissek A, Oelschlaegel M, et al. (2018)
APPLIED AND ENVIRONMENTAL MICROBIOLOGY 84(9): 16.
PUB | DOI | WoS | PubMed | Europe PMC
 
[48]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918672
Differential transcriptomic analysis reveals hidden light response in Streptomyces lividans
Koepff J, Morschett H, Busche T, Winkler A, Kalinowski J, Wiechert W, Oldiges M (2018)
BIOTECHNOLOGY PROGRESS 34(1): 287-292.
PUB | DOI | WoS | PubMed | Europe PMC
 
[47]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912114 OA
The Rhizoctonia solani AG1-IB (isolate 7/3/14) transcriptome during interaction with the host plant lettuce (Lactuca sativa L.)
Verwaaijen B, Wibberg D, Kröber M, Winkler A, Zrenner R, Bednarz H, Niehaus K, Grosch R, Pühler A, Schlüter A (2017)
PLOS ONE 12(5): e0177278.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[46]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913386 OA
Time-resolved transcriptome analysis and lipid pathway reconstruction of the oleaginous green microalga Monoraphidium neglectum reveal a model for triacylglycerol and lipid hyperaccumulation
Jaeger D, Winkler A, Mussgnug JH, Kalinowski J, Goesmann A, Kruse O (2017)
Biotechnology for Biofuels 10(1): 197.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[45]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913038 OA
Highly efficient methane generation from untreated microalgae biomass
Klassen V, Blifernez-Klassen O, Wibberg D, Winkler A, Kalinowski J, Posten C, Kruse O (2017)
Biotechnology for Biofuels 10(1): 186.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[44]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910668 OA
A Mitochondrial Autonomously Replicating Sequence from Pichia pastoris for Uniform High Level Recombinant Protein Production
Friehs K, Schwarzhans JP, Luttermann T, Wibberg D, Winkler A, Hübner W, Huser T, Kalinowski J (2017)
Frontiers in Microbiology 8: 780.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[43]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908419 OA
Genome Sequence of the Symbiotic Type Strain Rhizobium tibeticum CCBAU85039T
Torres Tejerizo GA, Wibberg D, Winkler A, Ormeño-Orrillo E, Martínez-Romero E, Niehaus K, Pühler A, Kalinowski J, Lagares A, Schlüter A, Pistorio M (2017)
Genome Announcements 5(4): e01513-16.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[42]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910373
Identification of a novel mycovirus isolated from Rhizoctonia solani (AG 2-2 IV) provides further information about genome plasticity within the order Tymovirales
Bartholomäus A, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M (2017)
Archives of Virology 162(2): 555-559.
PUB | DOI | WoS | PubMed | Europe PMC
 
[41]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914537
Isolation and whole genome analysis of endospore-forming bacteria from heroin.
Kalinowski J, Ahrens B, Al-Dilaimi A, Winkler A, Wibberg D, Schleenbecker U, Rückert C, Wölfel R, Grass G (2017)
Forensic Sci Int Genet 32: 1-6.
PUB | DOI | WoS | PubMed | Europe PMC
 
[40]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913403
Linking secondary metabolites to biosynthesis genes in the fungal endophyte Cyanodermella asteris: The anti-cancer bisanthraquinone skyrin.
Jahn L, Schafhauser T, Wibberg D, Rückert C, Winkler A, Kulik A, Weber T, Flor L, van Pée K-H, Kalinowski J, Ludwig-Müller J, et al. (2017)
Journal of Biotechnology 257: 233-239.
PUB | DOI | WoS | PubMed | Europe PMC
 
[39]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911777
Genome sequence of Methanobacterium congolense strain Buetzberg, a hydrogenotrophic, methanogenic archaeon, isolated from a mesophilic industrial-scale biogas plant utilizing bio-waste
Torres Tejerizo GA, Kim YS, Maus I, Wibberg D, Winkler A, Off S, Pühler A, Scherer P, Schlüter A (2017)
Journal of Biotechnology 247: 1-5.
PUB | DOI | WoS | PubMed | Europe PMC
 
[38]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907431
Deep Sequencing Analysis Reveals the Mycoviral Diversity of the Virome of an Avirulent Isolate of Rhizoctonia solani AG-2-2 IV
Bartholomaeus A, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M (2016)
PLOS ONE 11(11): e0165965.
PUB | DOI | WoS | PubMed | Europe PMC
 
[37]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905634
Deciphering the Transcriptional Response Mediated by the Redox-Sensing System HbpS-SenS-SenR from Streptomycetes
Busche T, Winkler A, Wedderhoff I, Rückert C, Kalinowski J, Lucana DO de O (2016)
PLOS ONE 11(8): e0159873.
PUB | DOI | WoS | PubMed | Europe PMC
 
[36]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901383
Isolation and genome sequencing of four Arctic marine Psychrobacter strains exhibiting multicopper oxidase activity.
Moghadam MS, Albersmeier A, Winkler A, Cimmino L, Rise K, Hohmann-Marriott MF, Kalinowski J, Rückert C, Wentzel A, Lale R (2016)
BMC Genomics 17(1): 117.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[35]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903655 OA
Integration event induced changes in recombinant protein productivity in Pichia pastoris discovered by whole genome sequencing and derived vector optimization
Schwarzhans JP, Wibberg D, Winkler A, Luttermann T, Kalinowski J, Friehs K (2016)
Microbial Cell Factories 15(1): 84.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[34]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904993 OA
Complete Genome Sequence of Herbinix luporumSD1D, a New Cellulose-Degrading Bacterium Isolated from a Thermophilic Biogas Reactor
Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2016)
Genome Announcements 4(4): e00687-16.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[33]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904970 OA
Complete Genome Sequence of the MethanogenMethanoculleus bourgensisBA1 Isolated from a Biogas Reactor
Maus I, Wibberg D, Winkler A, Pühler A, Schnürer A, Schlüter A (2016)
Genome Announcements 4(3): e00568-16.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[32]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904978 OA
Draft Genome Sequence of Propionisporasp. Strain 2/2-37, a New Xylan-Degrading Bacterium Isolated from a Mesophilic Biogas Reactor
Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2016)
Genome Announcements 4(3): e00609-16.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[31]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907676 OA
Complete Genome Sequence of the Barley Pathogen Xanthomonas translucens pv. translucens DSM 18974 T (ATCC 19319 T)
Jaenicke S, Bunk B, Wibberg D, Spröer C, Hersemann L, Blom J, Winkler A, Schatschneider S, Albaum S, Kölliker R, Goesmann A, et al. (2016)
Genome Announcements 4(6): e01334-16.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[30]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907679 OA
Non-canonical integration events in Pichia pastoris encountered during standard transformation analysed with genome sequencing
Schwarzhans JP, Wibberg D, Winkler A, Luttermann T, Kalinowski J, Friehs K (2016)
Scientific Reports 6(1): 38952.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[29]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907685 OA
Complete genome sequence of the actinomycete Actinoalloteichus hymeniacidonis type strain HPA 177T isolated from a marine sponge
Schaffert L, Albersmeier A, Winkler A, Kalinowski J, Zotchev SB, Rückert C (2016)
Standards in Genomic Sciences 11(1): 91.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[28]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904976 OA
Complete Chloroplast and Mitochondrial Genome Sequences of the Hydrocarbon Oil-Producing Green MicroalgaBotryococcus brauniiRace B (Showa)
Blifernez-Klassen O, Wibberg D, Winkler A, Blom J, Goesmann A, Kalinowski J, Kruse O (2016)
Genome Announcements 4(3): e00524-16.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[27]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906715
Corrigendum to "Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant (J. Biotechnol. 188 (2014) 136–137)")"
Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2016)
Journal of Biotechnology 237: 35.
PUB | DOI | WoS | PubMed | Europe PMC
 
[26]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904704
Complete mitochondrial genome of the scleractinian coral Porites rus
Celis JS, Wibberg D, Winkler A, Wilke T, Kalinowski J (2016)
Mitochondrial DNA 27(5): 3695-3696.
PUB | DOI | WoS | PubMed | Europe PMC
 
[25]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2902126
Taxonomic analysis of the microbial community in stored sugar beets using high-throughput sequencing of different marker genes
Liebe S, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M (2016)
FEMS Microbiology Ecology 92(2): fiw004.
PUB | DOI | WoS | PubMed | Europe PMC
 
[24]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901675
Intraspecies transfer of the chromosomally encoded Acinetobacter baumannii blaNDM-1 carbapenemase gene.
Krahn T, Wibberg D, Maus I, Winkler A, Bontron S, Sczyrba A, Nordmann P, Pühler A, Poirel L, Schlüter A (2016)
Antimicrobial Agents and Chemotherapy 60(5): 3032-3040.
PUB | DOI | WoS | PubMed | Europe PMC
 
[23]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905504
Comparative transcriptome analysis of the biocontrol strain Bacillus amyloliquefaciens FZB42 as response to biofilm formation analyzed by RNA sequencing
Kröber M, Verwaaijen B, Wibberg D, Winkler A, Pühler A, Schlüter A (2016)
Journal of Biotechnology 231: 212-223.
PUB | DOI | WoS | PubMed | Europe PMC
 
[22]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764906 OA
Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant
Bremges A, Maus I, Belmann P, Eikmeyer FG, Winkler A, Albersmeier A, Pühler A, Schlüter A, Sczyrba A (2015)
GigaScience 4(1): 33.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[21]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911748
Complete Genome Sequence ofAcinetobacter baumanniiCIP 70.10, a Susceptible Reference Strain for Comparative Genome Analyses
Krahn T, Wibberg D, Maus I, Winkler A, Pühler A, Poirel L, Schlüter A (2015)
Genome Announcements 3(4): e00850-15.
PUB | DOI | WoS | PubMed | Europe PMC
 
[20]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2753051
Complete Genome Sequence of Corynebacterium kutscheri DSM 20755, a Corynebacterial Type Strain with Remarkably Low G+C Content of Chromosomal DNA
Rückert C, Albersmeier A, Winkler A, Tauch A (2015)
Genome announcements 3(3): e00571-15.
PUB | DOI | WoS | PubMed | Europe PMC
 
[19]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2753057
Complete Genome Sequence of Corynebacterium camporealensis DSM 44610, Isolated from the Milk of a Manchega Sheep with Subclinical Mastitis
Rückert C, Albersmeier A, Winkler A, Tauch A (2015)
Genome announcements 3(3): e00572-15.
PUB | DOI | WoS | PubMed | Europe PMC
 
[18]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2761035
Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum
Arnold M, Wibberg D, Blom J, Schatschneider S, Winkler A, Kutter Y, Rückert C, Albersmeier A, Albaum S, Goesmann A, Zange S, et al. (2015)
Genome announcements 3(4): e00680-15.
PUB | DOI | WoS | PubMed | Europe PMC
 
[17]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2769395
Complete Genome Sequence of the Type Strain Corynebacterium epidermidicanis DSM 45586, Isolated from the Skin of a Dog Suffering from Pruritus
Rückert C, Eimer J, Winkler A, Tauch A (2015)
Genome announcements 3(4): e00959-15.
PUB | DOI | WoS | PubMed | Europe PMC
 
[16]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2765190
Virulence Factor Genes Detected in the Complete Genome Sequence of Corynebacterium uterequi DSM 45634, Isolated from the Uterus of a Maiden Mare
Rückert C, Kriete M, Jaenicke S, Winkler A, Tauch A (2015)
Genome announcements 3(4): e00783-15.
PUB | DOI | WoS | PubMed | Europe PMC
 
[15]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2765197
Complete Genome Sequence of the Type Strain Corynebacterium testudinoris DSM 44614, Recovered from Necrotic Lesions in the Mouth of a Tortoise
Rückert C, Kriete M, Jaenicke S, Winkler A, Tauch A (2015)
Genome announcements 3(4): e00784-15.
PUB | DOI | WoS | PubMed | Europe PMC
 
[14]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2775257
Complete Genome Sequence of the Type Strain Corynebacterium mustelae DSM 45274, Isolated from Various Tissues of a Male Ferret with Lethal Sepsis
Rückert C, Eimer J, Winkler A, Tauch A (2015)
Genome announcements 3(5): e01012-15.
PUB | DOI | WoS | PubMed | Europe PMC
 
[13]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2785064 OA
Complete Genome Sequence of the Clinical Strain Acinetobacter baumannii R2090 Carrying the Chromosomally Encoded Metallo-β-Lactamase GeneblaNDM-1
Krahn T, Wibberg D, Maus I, Winkler A, Nordmann P, Pühler A, Poirel L, Schlüter A (2015)
Genome Announcements 3(5): e01008-15.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[12]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758144
Improved genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 as established by deep mate-pair sequencing on the MiSeq (Illumina) system
Wibberg D, Rupp O, Jelonek L, Kröber M, Verwaaijen B, Blom J, Winkler A, Goesmann A, Grosch R, Pühler A, Schlüter A (2015)
Journal of Biotechnology 203: 19-21.
PUB | DOI | WoS | PubMed | Europe PMC
 
[11]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764512
Complete genome sequence of Rhodococcus erythropolis BG43 (DSM 46869), a degrader of Pseudomonas aeruginosa quorum sensing signal molecules
Rückert C, Birmes FS, Müller C, Niewerth H, Winkler A, Fetzner S, Kalinowski J (2015)
Journal of biotechnology 211: 99-100.
PUB | DOI | WoS | PubMed | Europe PMC
 
[10]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2709783
Complete Genome Sequence of the Actinobacterium Streptomyces glaucescens GLA.O (DSM 40922) consisting of a linear chromosome and one linear plasmid
Ortseifen V, Winkler A, Albersmeier A, Wendler S, Pühler A, Kalinowski J, Rückert C (2015)
Journal of Biotechnology 194: 81-83.
PUB | DOI | WoS | PubMed | Europe PMC
 
[9]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758122
Draft genome of the xanthan producer Xanthomonas campestris NRRL B-1459 (ATCC 13951)
Wibberg D, Alkhateeb R, Winkler A, Albersmeier A, Schatschneider S, Albaum S, Niehaus K, Hublik G, Pühler A, Vorhölter F-J (2015)
Journal of Biotechnology 204: 45-46.
PUB | DOI | WoS | PubMed | Europe PMC
 
[8]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758134
Complete genome sequence of the strain Defluviitoga tunisiensis L3, isolated from a thermophilic, production-scale biogas plant
Maus I, Cibis KG, Wibberg D, Winkler A, Stolze Y, König H, Pühler A, Schlüter A (2015)
Journal of Biotechnology 203: 17-18.
PUB | DOI | WoS | PubMed | Europe PMC
 
[7]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2719877
Complete genome sequence of Streptomyces lividans TK24
Rückert C, Albersmeier A, Busche T, Jaenicke S, Winkler A, Friðjónsson ÓH, Hreggviðsson GÓ, Lambert C, Badcock D, Bernaerts K, Anne J, et al. (2015)
Journal of Biotechnology 199: 21-22.
PUB | DOI | WoS | PubMed | Europe PMC
 
[6]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901214
Draft genome sequence of Herbinix hemicellulosilytica T3/55(T), a new thermophilic cellulose degrading bacterium isolated from a thermophilic biogas reactor
Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2015)
Journal of Biotechnology 214: 59-60.
PUB | DOI | WoS | PubMed | Europe PMC
 
[5]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764185
Draft genome sequence of Talaromyces islandicus ("Penicillium islandicum") WF-38-12, a neglected mold with significant biotechnological potential
Schafhauser T, Wibberg D, Rückert C, Winkler A, Flor L, van Pée K-H, Fewer DP, Sivonen K, Jahn L, Ludwig-Müller J, Caradec T, et al. (2015)
Journal of Biotechnology 211: 101-102.
PUB | DOI | WoS | PubMed | Europe PMC
 
[4]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689746
Complete genome sequence of Bacillus methanolicus MGA3, a thermotolerant amino acid producing methylotroph
Irla M, Neshat A, Winkler A, Albersmeier A, Heggeset TM, Brautaset T, Kalinowski J, Wendisch VF, Rückert C (2014)
Journal of Biotechnology 188: 110-111.
PUB | DOI | WoS | PubMed | Europe PMC
 
[3]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717539
Complete genome sequence of the methanogenic neotype strain Methanobacterium formicicum MFT
Maus I, Stantscheff R, Wibberg D, Stolze Y, Winkler A, Pühler A, König H, Schlüter A (2014)
Journal of Biotechnology 192: 40-41.
PUB | DOI | WoS | PubMed | Europe PMC
 
[2]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2707731
Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant
Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2014)
Journal of Biotechnology 188: 136-137.
PUB | DOI | WoS | PubMed | Europe PMC
 
[1]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2633427
Draft Genome Sequence of Sinorhizobium meliloti RU11/001, a model organism for flagellum structure, motility and chemotaxis
Wibberg D, Blom J, Rückert C, Winkler A, Albersmeier A, Pühler A, Schlüter A, Scharf BE (2013)
Journal of Biotechnology 168(4): 731-733.
PUB | DOI | WoS | PubMed | Europe PMC
 
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[72]
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2964659
psi-Footprinting approach for the identification of protein synthesis inhibitor producers
Handel F, Kulik A, Wex KW, Berscheid A, Saur JS, Winkler A, Wibberg D, Kalinowski J, Broetz-Oesterhelt H, Mast Y (2022)
NAR: Genomics and Bioinformatics 4(3): lqac055.
PUB | DOI | WoS | PubMed | Europe PMC
 
[71]
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956428
A Regulator Based "Semi-Targeted" Approach to Activate Silent Biosynthetic Gene Clusters
Mingyar E, Muhling L, Kulik A, Winkler A, Wibberg D, Kalinowski J, Blin K, Weber T, Wohlleben W, Stegmann E (2021)
International journal of molecular sciences 22(14): 7567.
PUB | DOI | WoS | PubMed | Europe PMC
 
[70]
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955526
Pseudomonas paraversuta sp. nov. isolated from refrigerated dry-aged beef.
Lick S, Wibberg D, Winkler A, Blom J, Grimmler C, Goesmann A, Kalinowski J, Krockel L (2021)
International journal of systematic and evolutionary microbiology 71(6).
PUB | DOI | WoS | PubMed | Europe PMC
 
[69]
2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2951146
Streptomyces dysideae sp. nov., isolated from a marine Mediterranean sponge Dysidea tupha.
Glaeser SP, Rückert C, Abdelmohsen UR, Winkler A, Blom J, Goesmann A, Kalinowski J, Hentschel U, Busse H-J, Kampfer P (2021)
International journal of systematic and evolutionary microbiology.
PUB | DOI | WoS | PubMed | Europe PMC
 
[68]
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950292 OA
Phytoplankton consortia as a blueprint for mutually beneficial eukaryote-bacteria ecosystems based on the biocoenosis of Botryococcus consortia
Blifernez-Klassen O, Klassen V, Wibberg D, Cebeci E, Henke C, Rückert C, Chaudhari S, Rupp O, Blom J, Winkler A, Al-Dilaimi A, et al. (2021)
Scientific Reports 11(1): 1726.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[67]
2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2949961
Global transcriptome analysis of Rhizobium favelukesii LPU83 in response to acid stress
Nilsson JF, Castellani LG, Draghi WO, Mogro EG, Wibberg D, Winkler A, Hansen LH, Schlüter A, Pühler A, Kalinowski J, Torres Tejerizo GA, et al. (2021)
FEMS Microbiology Ecology 97(1): fiaa235.
PUB | DOI | WoS | PubMed | Europe PMC
 
[66]
2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2948760
Genome sequence of Bradyrhizobium yuanmingense strain P10 130, a highly efficient nitrogen-fixing bacterium that could be used for Desmodium incanum inoculation.
Toniutti MA, Albicoro FJ, Castellani LG, Lopez Garcia SL, Fornasero LV, Zuber NE, Vera LM, Vacca C, Cafiero JH, Winkler A, Kalinowski J, et al. (2020)
Gene.
PUB | DOI | WoS | PubMed | Europe PMC
 
[65]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937242
Whole-Genome Sequence of Pseudoalteromonas sp. NC201, a Probiotic Strain for Litopenaeus stylirostris Hatcheries in New Caledonia
Sorieul L, Rückert C, Al-Dilaimi A, Winkler A, Kalinowski J, Pham D, Wabete N, Boulo V (2019)
Microbiology resource announcements 8(34): e00477-19.
PUB | DOI | WoS | PubMed | Europe PMC
 
[64]
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2938561
Pseudomonas bubulae sp. nov., isolated from beef.
Lick S, Krockel L, Wibberg D, Winkler A, Blom J, Goesmann A, Kalinowski J (2019)
International journal of systematic and evolutionary microbiology 70(1): 292-301.
PUB | DOI | WoS | PubMed | Europe PMC
 
[63]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936839 OA
Genetic Potential of the Biocontrol Agent Pseudomonas brassicacearum (Formerly P. trivialis) 3Re2-7 Unraveled by Genome Sequencing and Mining, Comparative Genomics and Transcriptomics
Nelkner J, Tejerizo GT, Hassa J, Lin TW, Witte J, Verwaaijen B, Winkler A, Bunk B, Spröer C, Overmann J, Grosch R, et al. (2019)
Genes 10(8): 601.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[62]
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935556 OA
A comprehensive analysis of the Lactuca sativa, L. transcriptome during different stages of the compatible interaction with Rhizoctonia solani
Verwaaijen B, Wibberg D, Winkler A, Zrenner R, Bednarz H, Niehaus K, Grosch R, Pühler A, Schlüter A (2019)
Scientific Reports 9(1): 7221.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[61]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932964
Harvest of the Oleaginous Microalgae Scenedesmus obtusiusculus by Flocculation From Culture Based on Natural Water Sources
Bracharz F, Helmdach D, Aschenbrenner I, Funck N, Wibberg D, Winkler A, Bohnen F, Kalinowski J, Mehlmer N, Brueck TB (2018)
FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY 6: 200.
PUB | DOI | WoS | PubMed | Europe PMC
 
[60]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932979
Biodegradation of dispersed oil in natural seawaters from Western Greenland and a Norwegian fjord
Brakstad OG, Davies EJ, Ribicic D, Winkler A, Bronner U, Netzer R (2018)
POLAR BIOLOGY 41(12): 2435-2450.
PUB | DOI | WoS
 
[59]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920777
Binning Enables Efficient Host Genome Reconstruction in Cnidarian Holobionts
Celis JS, Wibberg D, Ramírez-Portilla C, Rupp O, Sczyrba A, Winkler A, Kalinowski J, Wilke T (2018)
GigaScience 7(7): giy075.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[58]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920680
Comparative genomics reveals phylogenetic distribution patterns of secondary metabolites in Amycolatopsis species
Adamek M, Alanjary M, Sales-Ortells H, Goodfellow M, Bull AT, Winkler A, Wibberg D, Kalinowski J, Ziemert N (2018)
BMC GENOMICS 19(1): 15.
PUB | DOI | WoS | PubMed | Europe PMC
 
[57]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930633
Oil type and temperature dependent biodegradation dynamics - Combining chemical and microbial community data through multivariate analysis
Ribicic D, McFarlin KM, Netzer R, Brakstad OG, Winkler A, Throne-Holst M, Storseth TR (2018)
BMC MICROBIOLOGY 18(1): 83.
PUB | DOI | WoS | PubMed | Europe PMC
 
[56]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919058
The secreted metabolome of Streptomyces chartreusis and implications for bacterial chemistry
Senges CHR, Al-Dilaimi A, Marchbank DH, Wibberg D, Winkler A, Haltli B, Nowrousian M, Kalinowski J, Kerr RG, Bandow JE (2018)
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 115(10): 2490-2495.
PUB | DOI | WoS | PubMed | Europe PMC
 
[55]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916925
Individual- and Species-Specific Skin Microbiomes in Three Different Estrildid Finch Species Revealed by 16S Amplicon Sequencing
Engel K, Sauer J, Jünemann S, Winkler A, Wibberg D, Kalinowski J, Tauch A, Caspers B (2018)
Microbial Ecology 76(2): 518-529.
PUB | DOI | WoS | PubMed | Europe PMC
 
[54]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918969 OA
Complete Genome Sequence of Streptomyces lavendulae subsp. lavendulae CCM 3239 (Formerly “Streptomyces aureofaciens CCM 3239”), a Producer of the Angucycline-Type Antibiotic Auricin
Busche T, Novakova R, Al'Dilaimi A, Homerova D, Feckova L, Rezuchova B, Mingyar E, Csolleiova D, Bekeova C, Winkler A, Sevcikova B, et al. (2018)
Genome Announcements 6(9): e00103-18.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[53]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917037
Assembly of the Lactuca sativa, L. cv. Tizian draft genome sequence reveals differences within major resistance complex 1 as compared to the cv. Salinas reference genome
Verwaaijen B, Wibberg D, Nelkner J, Gordin M, Rupp O, Winkler A, Bremges A, Blom J, Grosch R, Pühler A, Schlüter A (2018)
Journal of Biotechology 267: 12-18.
PUB | DOI | WoS | PubMed | Europe PMC
 
[52]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931970
Comparison of microbial community dynamics induced by distinct crude oil dispersions reveals compositional differences
Ribicic D, Netzer R, Winkler A, Brakstad OG (2018)
JOURNAL OF SEA RESEARCH 141: 112-118.
PUB | DOI | WoS
 
[51]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920334
Biodegradation of dispersed oil in seawater is not inhibited by a commercial oil spill dispersant
Brakstad OG, Ribicic D, Winkler A, Netzer R (2018)
MARINE POLLUTION BULLETIN 129(2): 555-561.
PUB | DOI | WoS | PubMed | Europe PMC
 
[50]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920701
Microbial communities in seawater from an Arctic and a temperate Norwegian fjord and their potentials for biodegradation of chemically dispersed oil at low seawater temperatures
Ribicic D, Netzer R, Winkler A, Brakstad OG (2018)
MARINE POLLUTION BULLETIN 129(1): 308-317.
PUB | DOI | WoS | PubMed | Europe PMC
 
[49]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920259
On the Enigma of Glutathione-Dependent Styrene Degradation in Gordonia rubripertincta CWB2
Heine T, Zimmerling J, Ballmann A, Kleeberg SB, Rückert C, Busche T, Winkler A, Kalinowski J, Poetsch A, Scholtissek A, Oelschlaegel M, et al. (2018)
APPLIED AND ENVIRONMENTAL MICROBIOLOGY 84(9): 16.
PUB | DOI | WoS | PubMed | Europe PMC
 
[48]
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918672
Differential transcriptomic analysis reveals hidden light response in Streptomyces lividans
Koepff J, Morschett H, Busche T, Winkler A, Kalinowski J, Wiechert W, Oldiges M (2018)
BIOTECHNOLOGY PROGRESS 34(1): 287-292.
PUB | DOI | WoS | PubMed | Europe PMC
 
[47]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912114 OA
The Rhizoctonia solani AG1-IB (isolate 7/3/14) transcriptome during interaction with the host plant lettuce (Lactuca sativa L.)
Verwaaijen B, Wibberg D, Kröber M, Winkler A, Zrenner R, Bednarz H, Niehaus K, Grosch R, Pühler A, Schlüter A (2017)
PLOS ONE 12(5): e0177278.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[46]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913386 OA
Time-resolved transcriptome analysis and lipid pathway reconstruction of the oleaginous green microalga Monoraphidium neglectum reveal a model for triacylglycerol and lipid hyperaccumulation
Jaeger D, Winkler A, Mussgnug JH, Kalinowski J, Goesmann A, Kruse O (2017)
Biotechnology for Biofuels 10(1): 197.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[45]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913038 OA
Highly efficient methane generation from untreated microalgae biomass
Klassen V, Blifernez-Klassen O, Wibberg D, Winkler A, Kalinowski J, Posten C, Kruse O (2017)
Biotechnology for Biofuels 10(1): 186.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[44]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910668 OA
A Mitochondrial Autonomously Replicating Sequence from Pichia pastoris for Uniform High Level Recombinant Protein Production
Friehs K, Schwarzhans JP, Luttermann T, Wibberg D, Winkler A, Hübner W, Huser T, Kalinowski J (2017)
Frontiers in Microbiology 8: 780.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[43]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908419 OA
Genome Sequence of the Symbiotic Type Strain Rhizobium tibeticum CCBAU85039T
Torres Tejerizo GA, Wibberg D, Winkler A, Ormeño-Orrillo E, Martínez-Romero E, Niehaus K, Pühler A, Kalinowski J, Lagares A, Schlüter A, Pistorio M (2017)
Genome Announcements 5(4): e01513-16.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[42]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910373
Identification of a novel mycovirus isolated from Rhizoctonia solani (AG 2-2 IV) provides further information about genome plasticity within the order Tymovirales
Bartholomäus A, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M (2017)
Archives of Virology 162(2): 555-559.
PUB | DOI | WoS | PubMed | Europe PMC
 
[41]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914537
Isolation and whole genome analysis of endospore-forming bacteria from heroin.
Kalinowski J, Ahrens B, Al-Dilaimi A, Winkler A, Wibberg D, Schleenbecker U, Rückert C, Wölfel R, Grass G (2017)
Forensic Sci Int Genet 32: 1-6.
PUB | DOI | WoS | PubMed | Europe PMC
 
[40]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913403
Linking secondary metabolites to biosynthesis genes in the fungal endophyte Cyanodermella asteris: The anti-cancer bisanthraquinone skyrin.
Jahn L, Schafhauser T, Wibberg D, Rückert C, Winkler A, Kulik A, Weber T, Flor L, van Pée K-H, Kalinowski J, Ludwig-Müller J, et al. (2017)
Journal of Biotechnology 257: 233-239.
PUB | DOI | WoS | PubMed | Europe PMC
 
[39]
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911777
Genome sequence of Methanobacterium congolense strain Buetzberg, a hydrogenotrophic, methanogenic archaeon, isolated from a mesophilic industrial-scale biogas plant utilizing bio-waste
Torres Tejerizo GA, Kim YS, Maus I, Wibberg D, Winkler A, Off S, Pühler A, Scherer P, Schlüter A (2017)
Journal of Biotechnology 247: 1-5.
PUB | DOI | WoS | PubMed | Europe PMC
 
[38]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907431
Deep Sequencing Analysis Reveals the Mycoviral Diversity of the Virome of an Avirulent Isolate of Rhizoctonia solani AG-2-2 IV
Bartholomaeus A, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M (2016)
PLOS ONE 11(11): e0165965.
PUB | DOI | WoS | PubMed | Europe PMC
 
[37]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905634
Deciphering the Transcriptional Response Mediated by the Redox-Sensing System HbpS-SenS-SenR from Streptomycetes
Busche T, Winkler A, Wedderhoff I, Rückert C, Kalinowski J, Lucana DO de O (2016)
PLOS ONE 11(8): e0159873.
PUB | DOI | WoS | PubMed | Europe PMC
 
[36]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901383
Isolation and genome sequencing of four Arctic marine Psychrobacter strains exhibiting multicopper oxidase activity.
Moghadam MS, Albersmeier A, Winkler A, Cimmino L, Rise K, Hohmann-Marriott MF, Kalinowski J, Rückert C, Wentzel A, Lale R (2016)
BMC Genomics 17(1): 117.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
[35]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903655 OA
Integration event induced changes in recombinant protein productivity in Pichia pastoris discovered by whole genome sequencing and derived vector optimization
Schwarzhans JP, Wibberg D, Winkler A, Luttermann T, Kalinowski J, Friehs K (2016)
Microbial Cell Factories 15(1): 84.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[34]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904993 OA
Complete Genome Sequence of Herbinix luporumSD1D, a New Cellulose-Degrading Bacterium Isolated from a Thermophilic Biogas Reactor
Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2016)
Genome Announcements 4(4): e00687-16.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[33]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904970 OA
Complete Genome Sequence of the MethanogenMethanoculleus bourgensisBA1 Isolated from a Biogas Reactor
Maus I, Wibberg D, Winkler A, Pühler A, Schnürer A, Schlüter A (2016)
Genome Announcements 4(3): e00568-16.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[32]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904978 OA
Draft Genome Sequence of Propionisporasp. Strain 2/2-37, a New Xylan-Degrading Bacterium Isolated from a Mesophilic Biogas Reactor
Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2016)
Genome Announcements 4(3): e00609-16.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[31]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907676 OA
Complete Genome Sequence of the Barley Pathogen Xanthomonas translucens pv. translucens DSM 18974 T (ATCC 19319 T)
Jaenicke S, Bunk B, Wibberg D, Spröer C, Hersemann L, Blom J, Winkler A, Schatschneider S, Albaum S, Kölliker R, Goesmann A, et al. (2016)
Genome Announcements 4(6): e01334-16.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[30]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907679 OA
Non-canonical integration events in Pichia pastoris encountered during standard transformation analysed with genome sequencing
Schwarzhans JP, Wibberg D, Winkler A, Luttermann T, Kalinowski J, Friehs K (2016)
Scientific Reports 6(1): 38952.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[29]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907685 OA
Complete genome sequence of the actinomycete Actinoalloteichus hymeniacidonis type strain HPA 177T isolated from a marine sponge
Schaffert L, Albersmeier A, Winkler A, Kalinowski J, Zotchev SB, Rückert C (2016)
Standards in Genomic Sciences 11(1): 91.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[28]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904976 OA
Complete Chloroplast and Mitochondrial Genome Sequences of the Hydrocarbon Oil-Producing Green MicroalgaBotryococcus brauniiRace B (Showa)
Blifernez-Klassen O, Wibberg D, Winkler A, Blom J, Goesmann A, Kalinowski J, Kruse O (2016)
Genome Announcements 4(3): e00524-16.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[27]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906715
Corrigendum to "Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant (J. Biotechnol. 188 (2014) 136–137)")"
Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2016)
Journal of Biotechnology 237: 35.
PUB | DOI | WoS | PubMed | Europe PMC
 
[26]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904704
Complete mitochondrial genome of the scleractinian coral Porites rus
Celis JS, Wibberg D, Winkler A, Wilke T, Kalinowski J (2016)
Mitochondrial DNA 27(5): 3695-3696.
PUB | DOI | WoS | PubMed | Europe PMC
 
[25]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2902126
Taxonomic analysis of the microbial community in stored sugar beets using high-throughput sequencing of different marker genes
Liebe S, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M (2016)
FEMS Microbiology Ecology 92(2): fiw004.
PUB | DOI | WoS | PubMed | Europe PMC
 
[24]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901675
Intraspecies transfer of the chromosomally encoded Acinetobacter baumannii blaNDM-1 carbapenemase gene.
Krahn T, Wibberg D, Maus I, Winkler A, Bontron S, Sczyrba A, Nordmann P, Pühler A, Poirel L, Schlüter A (2016)
Antimicrobial Agents and Chemotherapy 60(5): 3032-3040.
PUB | DOI | WoS | PubMed | Europe PMC
 
[23]
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905504
Comparative transcriptome analysis of the biocontrol strain Bacillus amyloliquefaciens FZB42 as response to biofilm formation analyzed by RNA sequencing
Kröber M, Verwaaijen B, Wibberg D, Winkler A, Pühler A, Schlüter A (2016)
Journal of Biotechnology 231: 212-223.
PUB | DOI | WoS | PubMed | Europe PMC
 
[22]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764906 OA
Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant
Bremges A, Maus I, Belmann P, Eikmeyer FG, Winkler A, Albersmeier A, Pühler A, Schlüter A, Sczyrba A (2015)
GigaScience 4(1): 33.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[21]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911748
Complete Genome Sequence ofAcinetobacter baumanniiCIP 70.10, a Susceptible Reference Strain for Comparative Genome Analyses
Krahn T, Wibberg D, Maus I, Winkler A, Pühler A, Poirel L, Schlüter A (2015)
Genome Announcements 3(4): e00850-15.
PUB | DOI | WoS | PubMed | Europe PMC
 
[20]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2753051
Complete Genome Sequence of Corynebacterium kutscheri DSM 20755, a Corynebacterial Type Strain with Remarkably Low G+C Content of Chromosomal DNA
Rückert C, Albersmeier A, Winkler A, Tauch A (2015)
Genome announcements 3(3): e00571-15.
PUB | DOI | WoS | PubMed | Europe PMC
 
[19]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2753057
Complete Genome Sequence of Corynebacterium camporealensis DSM 44610, Isolated from the Milk of a Manchega Sheep with Subclinical Mastitis
Rückert C, Albersmeier A, Winkler A, Tauch A (2015)
Genome announcements 3(3): e00572-15.
PUB | DOI | WoS | PubMed | Europe PMC
 
[18]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2761035
Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum
Arnold M, Wibberg D, Blom J, Schatschneider S, Winkler A, Kutter Y, Rückert C, Albersmeier A, Albaum S, Goesmann A, Zange S, et al. (2015)
Genome announcements 3(4): e00680-15.
PUB | DOI | WoS | PubMed | Europe PMC
 
[17]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2769395
Complete Genome Sequence of the Type Strain Corynebacterium epidermidicanis DSM 45586, Isolated from the Skin of a Dog Suffering from Pruritus
Rückert C, Eimer J, Winkler A, Tauch A (2015)
Genome announcements 3(4): e00959-15.
PUB | DOI | WoS | PubMed | Europe PMC
 
[16]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2765190
Virulence Factor Genes Detected in the Complete Genome Sequence of Corynebacterium uterequi DSM 45634, Isolated from the Uterus of a Maiden Mare
Rückert C, Kriete M, Jaenicke S, Winkler A, Tauch A (2015)
Genome announcements 3(4): e00783-15.
PUB | DOI | WoS | PubMed | Europe PMC
 
[15]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2765197
Complete Genome Sequence of the Type Strain Corynebacterium testudinoris DSM 44614, Recovered from Necrotic Lesions in the Mouth of a Tortoise
Rückert C, Kriete M, Jaenicke S, Winkler A, Tauch A (2015)
Genome announcements 3(4): e00784-15.
PUB | DOI | WoS | PubMed | Europe PMC
 
[14]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2775257
Complete Genome Sequence of the Type Strain Corynebacterium mustelae DSM 45274, Isolated from Various Tissues of a Male Ferret with Lethal Sepsis
Rückert C, Eimer J, Winkler A, Tauch A (2015)
Genome announcements 3(5): e01012-15.
PUB | DOI | WoS | PubMed | Europe PMC
 
[13]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2785064 OA
Complete Genome Sequence of the Clinical Strain Acinetobacter baumannii R2090 Carrying the Chromosomally Encoded Metallo-β-Lactamase GeneblaNDM-1
Krahn T, Wibberg D, Maus I, Winkler A, Nordmann P, Pühler A, Poirel L, Schlüter A (2015)
Genome Announcements 3(5): e01008-15.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[12]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758144
Improved genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 as established by deep mate-pair sequencing on the MiSeq (Illumina) system
Wibberg D, Rupp O, Jelonek L, Kröber M, Verwaaijen B, Blom J, Winkler A, Goesmann A, Grosch R, Pühler A, Schlüter A (2015)
Journal of Biotechnology 203: 19-21.
PUB | DOI | WoS | PubMed | Europe PMC
 
[11]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764512
Complete genome sequence of Rhodococcus erythropolis BG43 (DSM 46869), a degrader of Pseudomonas aeruginosa quorum sensing signal molecules
Rückert C, Birmes FS, Müller C, Niewerth H, Winkler A, Fetzner S, Kalinowski J (2015)
Journal of biotechnology 211: 99-100.
PUB | DOI | WoS | PubMed | Europe PMC
 
[10]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2709783
Complete Genome Sequence of the Actinobacterium Streptomyces glaucescens GLA.O (DSM 40922) consisting of a linear chromosome and one linear plasmid
Ortseifen V, Winkler A, Albersmeier A, Wendler S, Pühler A, Kalinowski J, Rückert C (2015)
Journal of Biotechnology 194: 81-83.
PUB | DOI | WoS | PubMed | Europe PMC
 
[9]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758122
Draft genome of the xanthan producer Xanthomonas campestris NRRL B-1459 (ATCC 13951)
Wibberg D, Alkhateeb R, Winkler A, Albersmeier A, Schatschneider S, Albaum S, Niehaus K, Hublik G, Pühler A, Vorhölter F-J (2015)
Journal of Biotechnology 204: 45-46.
PUB | DOI | WoS | PubMed | Europe PMC
 
[8]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758134
Complete genome sequence of the strain Defluviitoga tunisiensis L3, isolated from a thermophilic, production-scale biogas plant
Maus I, Cibis KG, Wibberg D, Winkler A, Stolze Y, König H, Pühler A, Schlüter A (2015)
Journal of Biotechnology 203: 17-18.
PUB | DOI | WoS | PubMed | Europe PMC
 
[7]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2719877
Complete genome sequence of Streptomyces lividans TK24
Rückert C, Albersmeier A, Busche T, Jaenicke S, Winkler A, Friðjónsson ÓH, Hreggviðsson GÓ, Lambert C, Badcock D, Bernaerts K, Anne J, et al. (2015)
Journal of Biotechnology 199: 21-22.
PUB | DOI | WoS | PubMed | Europe PMC
 
[6]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901214
Draft genome sequence of Herbinix hemicellulosilytica T3/55(T), a new thermophilic cellulose degrading bacterium isolated from a thermophilic biogas reactor
Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2015)
Journal of Biotechnology 214: 59-60.
PUB | DOI | WoS | PubMed | Europe PMC
 
[5]
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764185
Draft genome sequence of Talaromyces islandicus ("Penicillium islandicum") WF-38-12, a neglected mold with significant biotechnological potential
Schafhauser T, Wibberg D, Rückert C, Winkler A, Flor L, van Pée K-H, Fewer DP, Sivonen K, Jahn L, Ludwig-Müller J, Caradec T, et al. (2015)
Journal of Biotechnology 211: 101-102.
PUB | DOI | WoS | PubMed | Europe PMC
 
[4]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689746
Complete genome sequence of Bacillus methanolicus MGA3, a thermotolerant amino acid producing methylotroph
Irla M, Neshat A, Winkler A, Albersmeier A, Heggeset TM, Brautaset T, Kalinowski J, Wendisch VF, Rückert C (2014)
Journal of Biotechnology 188: 110-111.
PUB | DOI | WoS | PubMed | Europe PMC
 
[3]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717539
Complete genome sequence of the methanogenic neotype strain Methanobacterium formicicum MFT
Maus I, Stantscheff R, Wibberg D, Stolze Y, Winkler A, Pühler A, König H, Schlüter A (2014)
Journal of Biotechnology 192: 40-41.
PUB | DOI | WoS | PubMed | Europe PMC
 
[2]
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2707731
Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant
Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2014)
Journal of Biotechnology 188: 136-137.
PUB | DOI | WoS | PubMed | Europe PMC
 
[1]
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2633427
Draft Genome Sequence of Sinorhizobium meliloti RU11/001, a model organism for flagellum structure, motility and chemotaxis
Wibberg D, Blom J, Rückert C, Winkler A, Albersmeier A, Pühler A, Schlüter A, Scharf BE (2013)
Journal of Biotechnology 168(4): 731-733.
PUB | DOI | WoS | PubMed | Europe PMC
 
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