72 Publikationen
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2964659
psi-Footprinting approach for the identification of protein synthesis inhibitor producers
Handel F, Kulik A, Wex KW, Berscheid A, Saur JS, Winkler A, Wibberg D, Kalinowski J, Broetz-Oesterhelt H, Mast Y (2022)
NAR: Genomics and Bioinformatics 4(3): lqac055.
PUB | DOI | WoS | PubMed | Europe PMC
Handel F, Kulik A, Wex KW, Berscheid A, Saur JS, Winkler A, Wibberg D, Kalinowski J, Broetz-Oesterhelt H, Mast Y (2022)
NAR: Genomics and Bioinformatics 4(3): lqac055.
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956428
A Regulator Based "Semi-Targeted" Approach to Activate Silent Biosynthetic Gene Clusters
Mingyar E, Muhling L, Kulik A, Winkler A, Wibberg D, Kalinowski J, Blin K, Weber T, Wohlleben W, Stegmann E (2021)
International journal of molecular sciences 22(14): 7567.
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Mingyar E, Muhling L, Kulik A, Winkler A, Wibberg D, Kalinowski J, Blin K, Weber T, Wohlleben W, Stegmann E (2021)
International journal of molecular sciences 22(14): 7567.
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955526
Pseudomonas paraversuta sp. nov. isolated from refrigerated dry-aged beef.
Lick S, Wibberg D, Winkler A, Blom J, Grimmler C, Goesmann A, Kalinowski J, Krockel L (2021)
International journal of systematic and evolutionary microbiology 71(6).
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Lick S, Wibberg D, Winkler A, Blom J, Grimmler C, Goesmann A, Kalinowski J, Krockel L (2021)
International journal of systematic and evolutionary microbiology 71(6).
2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2951146
Streptomyces dysideae sp. nov., isolated from a marine Mediterranean sponge Dysidea tupha.
Glaeser SP, Rückert C, Abdelmohsen UR, Winkler A, Blom J, Goesmann A, Kalinowski J, Hentschel U, Busse H-J, Kampfer P (2021)
International journal of systematic and evolutionary microbiology.
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Glaeser SP, Rückert C, Abdelmohsen UR, Winkler A, Blom J, Goesmann A, Kalinowski J, Hentschel U, Busse H-J, Kampfer P (2021)
International journal of systematic and evolutionary microbiology.
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950292

Phytoplankton consortia as a blueprint for mutually beneficial eukaryote-bacteria ecosystems based on the biocoenosis of Botryococcus consortia
Blifernez-Klassen O, Klassen V, Wibberg D, Cebeci E, Henke C, Rückert C, Chaudhari S, Rupp O, Blom J, Winkler A, Al-Dilaimi A, et al. (2021)
Scientific Reports 11(1): 1726.
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Blifernez-Klassen O, Klassen V, Wibberg D, Cebeci E, Henke C, Rückert C, Chaudhari S, Rupp O, Blom J, Winkler A, Al-Dilaimi A, et al. (2021)
Scientific Reports 11(1): 1726.
2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2949961
Global transcriptome analysis of Rhizobium favelukesii LPU83 in response to acid stress
Nilsson JF, Castellani LG, Draghi WO, Mogro EG, Wibberg D, Winkler A, Hansen LH, Schlüter A, Pühler A, Kalinowski J, Torres Tejerizo GA, et al. (2021)
FEMS Microbiology Ecology 97(1): fiaa235.
PUB | DOI | WoS | PubMed | Europe PMC
Nilsson JF, Castellani LG, Draghi WO, Mogro EG, Wibberg D, Winkler A, Hansen LH, Schlüter A, Pühler A, Kalinowski J, Torres Tejerizo GA, et al. (2021)
FEMS Microbiology Ecology 97(1): fiaa235.
2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2948760
Genome sequence of Bradyrhizobium yuanmingense strain P10 130, a highly efficient nitrogen-fixing bacterium that could be used for Desmodium incanum inoculation.
Toniutti MA, Albicoro FJ, Castellani LG, Lopez Garcia SL, Fornasero LV, Zuber NE, Vera LM, Vacca C, Cafiero JH, Winkler A, Kalinowski J, et al. (2020)
Gene.
PUB | DOI | WoS | PubMed | Europe PMC
Toniutti MA, Albicoro FJ, Castellani LG, Lopez Garcia SL, Fornasero LV, Zuber NE, Vera LM, Vacca C, Cafiero JH, Winkler A, Kalinowski J, et al. (2020)
Gene.
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937242
Whole-Genome Sequence of Pseudoalteromonas sp. NC201, a Probiotic Strain for Litopenaeus stylirostris Hatcheries in New Caledonia
Sorieul L, Rückert C, Al-Dilaimi A, Winkler A, Kalinowski J, Pham D, Wabete N, Boulo V (2019)
Microbiology resource announcements 8(34): e00477-19.
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Sorieul L, Rückert C, Al-Dilaimi A, Winkler A, Kalinowski J, Pham D, Wabete N, Boulo V (2019)
Microbiology resource announcements 8(34): e00477-19.
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2938561
Pseudomonas bubulae sp. nov., isolated from beef.
Lick S, Krockel L, Wibberg D, Winkler A, Blom J, Goesmann A, Kalinowski J (2019)
International journal of systematic and evolutionary microbiology 70(1): 292-301.
PUB | DOI | WoS | PubMed | Europe PMC
Lick S, Krockel L, Wibberg D, Winkler A, Blom J, Goesmann A, Kalinowski J (2019)
International journal of systematic and evolutionary microbiology 70(1): 292-301.
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936839

Genetic Potential of the Biocontrol Agent Pseudomonas brassicacearum (Formerly P. trivialis) 3Re2-7 Unraveled by Genome Sequencing and Mining, Comparative Genomics and Transcriptomics
Nelkner J, Tejerizo GT, Hassa J, Lin TW, Witte J, Verwaaijen B, Winkler A, Bunk B, Spröer C, Overmann J, Grosch R, et al. (2019)
Genes 10(8): 601.
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Nelkner J, Tejerizo GT, Hassa J, Lin TW, Witte J, Verwaaijen B, Winkler A, Bunk B, Spröer C, Overmann J, Grosch R, et al. (2019)
Genes 10(8): 601.
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935556

A comprehensive analysis of the Lactuca sativa, L. transcriptome during different stages of the compatible interaction with Rhizoctonia solani
Verwaaijen B, Wibberg D, Winkler A, Zrenner R, Bednarz H, Niehaus K, Grosch R, Pühler A, Schlüter A (2019)
Scientific Reports 9(1): 7221.
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Verwaaijen B, Wibberg D, Winkler A, Zrenner R, Bednarz H, Niehaus K, Grosch R, Pühler A, Schlüter A (2019)
Scientific Reports 9(1): 7221.
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932964
Harvest of the Oleaginous Microalgae Scenedesmus obtusiusculus by Flocculation From Culture Based on Natural Water Sources
Bracharz F, Helmdach D, Aschenbrenner I, Funck N, Wibberg D, Winkler A, Bohnen F, Kalinowski J, Mehlmer N, Brueck TB (2018)
FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY 6: 200.
PUB | DOI | WoS | PubMed | Europe PMC
Bracharz F, Helmdach D, Aschenbrenner I, Funck N, Wibberg D, Winkler A, Bohnen F, Kalinowski J, Mehlmer N, Brueck TB (2018)
FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY 6: 200.
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932979
Biodegradation of dispersed oil in natural seawaters from Western Greenland and a Norwegian fjord
Brakstad OG, Davies EJ, Ribicic D, Winkler A, Bronner U, Netzer R (2018)
POLAR BIOLOGY 41(12): 2435-2450.
PUB | DOI | WoS
Brakstad OG, Davies EJ, Ribicic D, Winkler A, Bronner U, Netzer R (2018)
POLAR BIOLOGY 41(12): 2435-2450.
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920777
Binning Enables Efficient Host Genome Reconstruction in Cnidarian Holobionts
Celis JS, Wibberg D, Ramírez-Portilla C, Rupp O, Sczyrba A, Winkler A, Kalinowski J, Wilke T (2018)
GigaScience 7(7): giy075.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Celis JS, Wibberg D, Ramírez-Portilla C, Rupp O, Sczyrba A, Winkler A, Kalinowski J, Wilke T (2018)
GigaScience 7(7): giy075.
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920680
Comparative genomics reveals phylogenetic distribution patterns of secondary metabolites in Amycolatopsis species
Adamek M, Alanjary M, Sales-Ortells H, Goodfellow M, Bull AT, Winkler A, Wibberg D, Kalinowski J, Ziemert N (2018)
BMC GENOMICS 19(1): 15.
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Adamek M, Alanjary M, Sales-Ortells H, Goodfellow M, Bull AT, Winkler A, Wibberg D, Kalinowski J, Ziemert N (2018)
BMC GENOMICS 19(1): 15.
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930633
Oil type and temperature dependent biodegradation dynamics - Combining chemical and microbial community data through multivariate analysis
Ribicic D, McFarlin KM, Netzer R, Brakstad OG, Winkler A, Throne-Holst M, Storseth TR (2018)
BMC MICROBIOLOGY 18(1): 83.
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Ribicic D, McFarlin KM, Netzer R, Brakstad OG, Winkler A, Throne-Holst M, Storseth TR (2018)
BMC MICROBIOLOGY 18(1): 83.
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919058
The secreted metabolome of Streptomyces chartreusis and implications for bacterial chemistry
Senges CHR, Al-Dilaimi A, Marchbank DH, Wibberg D, Winkler A, Haltli B, Nowrousian M, Kalinowski J, Kerr RG, Bandow JE (2018)
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 115(10): 2490-2495.
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Senges CHR, Al-Dilaimi A, Marchbank DH, Wibberg D, Winkler A, Haltli B, Nowrousian M, Kalinowski J, Kerr RG, Bandow JE (2018)
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 115(10): 2490-2495.
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916925
Individual- and Species-Specific Skin Microbiomes in Three Different Estrildid Finch Species Revealed by 16S Amplicon Sequencing
Engel K, Sauer J, Jünemann S, Winkler A, Wibberg D, Kalinowski J, Tauch A, Caspers B (2018)
Microbial Ecology 76(2): 518-529.
PUB | DOI | WoS | PubMed | Europe PMC
Engel K, Sauer J, Jünemann S, Winkler A, Wibberg D, Kalinowski J, Tauch A, Caspers B (2018)
Microbial Ecology 76(2): 518-529.
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918969

Complete Genome Sequence of Streptomyces lavendulae subsp. lavendulae CCM 3239 (Formerly “Streptomyces aureofaciens CCM 3239”), a Producer of the Angucycline-Type Antibiotic Auricin
Busche T, Novakova R, Al'Dilaimi A, Homerova D, Feckova L, Rezuchova B, Mingyar E, Csolleiova D, Bekeova C, Winkler A, Sevcikova B, et al. (2018)
Genome Announcements 6(9): e00103-18.
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Busche T, Novakova R, Al'Dilaimi A, Homerova D, Feckova L, Rezuchova B, Mingyar E, Csolleiova D, Bekeova C, Winkler A, Sevcikova B, et al. (2018)
Genome Announcements 6(9): e00103-18.
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917037
Assembly of the Lactuca sativa, L. cv. Tizian draft genome sequence reveals differences within major resistance complex 1 as compared to the cv. Salinas reference genome
Verwaaijen B, Wibberg D, Nelkner J, Gordin M, Rupp O, Winkler A, Bremges A, Blom J, Grosch R, Pühler A, Schlüter A (2018)
Journal of Biotechology 267: 12-18.
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Verwaaijen B, Wibberg D, Nelkner J, Gordin M, Rupp O, Winkler A, Bremges A, Blom J, Grosch R, Pühler A, Schlüter A (2018)
Journal of Biotechology 267: 12-18.
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931970
Comparison of microbial community dynamics induced by distinct crude oil dispersions reveals compositional differences
Ribicic D, Netzer R, Winkler A, Brakstad OG (2018)
JOURNAL OF SEA RESEARCH 141: 112-118.
PUB | DOI | WoS
Ribicic D, Netzer R, Winkler A, Brakstad OG (2018)
JOURNAL OF SEA RESEARCH 141: 112-118.
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920334
Biodegradation of dispersed oil in seawater is not inhibited by a commercial oil spill dispersant
Brakstad OG, Ribicic D, Winkler A, Netzer R (2018)
MARINE POLLUTION BULLETIN 129(2): 555-561.
PUB | DOI | WoS | PubMed | Europe PMC
Brakstad OG, Ribicic D, Winkler A, Netzer R (2018)
MARINE POLLUTION BULLETIN 129(2): 555-561.
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920701
Microbial communities in seawater from an Arctic and a temperate Norwegian fjord and their potentials for biodegradation of chemically dispersed oil at low seawater temperatures
Ribicic D, Netzer R, Winkler A, Brakstad OG (2018)
MARINE POLLUTION BULLETIN 129(1): 308-317.
PUB | DOI | WoS | PubMed | Europe PMC
Ribicic D, Netzer R, Winkler A, Brakstad OG (2018)
MARINE POLLUTION BULLETIN 129(1): 308-317.
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920259
On the Enigma of Glutathione-Dependent Styrene Degradation in Gordonia rubripertincta CWB2
Heine T, Zimmerling J, Ballmann A, Kleeberg SB, Rückert C, Busche T, Winkler A, Kalinowski J, Poetsch A, Scholtissek A, Oelschlaegel M, et al. (2018)
APPLIED AND ENVIRONMENTAL MICROBIOLOGY 84(9): 16.
PUB | DOI | WoS | PubMed | Europe PMC
Heine T, Zimmerling J, Ballmann A, Kleeberg SB, Rückert C, Busche T, Winkler A, Kalinowski J, Poetsch A, Scholtissek A, Oelschlaegel M, et al. (2018)
APPLIED AND ENVIRONMENTAL MICROBIOLOGY 84(9): 16.
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918672
Differential transcriptomic analysis reveals hidden light response in Streptomyces lividans
Koepff J, Morschett H, Busche T, Winkler A, Kalinowski J, Wiechert W, Oldiges M (2018)
BIOTECHNOLOGY PROGRESS 34(1): 287-292.
PUB | DOI | WoS | PubMed | Europe PMC
Koepff J, Morschett H, Busche T, Winkler A, Kalinowski J, Wiechert W, Oldiges M (2018)
BIOTECHNOLOGY PROGRESS 34(1): 287-292.
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912114

The Rhizoctonia solani AG1-IB (isolate 7/3/14) transcriptome during interaction with the host plant lettuce (Lactuca sativa L.)
Verwaaijen B, Wibberg D, Kröber M, Winkler A, Zrenner R, Bednarz H, Niehaus K, Grosch R, Pühler A, Schlüter A (2017)
PLOS ONE 12(5): e0177278.
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Verwaaijen B, Wibberg D, Kröber M, Winkler A, Zrenner R, Bednarz H, Niehaus K, Grosch R, Pühler A, Schlüter A (2017)
PLOS ONE 12(5): e0177278.
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913386

Time-resolved transcriptome analysis and lipid pathway reconstruction of the oleaginous green microalga Monoraphidium neglectum reveal a model for triacylglycerol and lipid hyperaccumulation
Jaeger D, Winkler A, Mussgnug JH, Kalinowski J, Goesmann A, Kruse O (2017)
Biotechnology for Biofuels 10(1): 197.
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Jaeger D, Winkler A, Mussgnug JH, Kalinowski J, Goesmann A, Kruse O (2017)
Biotechnology for Biofuels 10(1): 197.
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913038

Highly efficient methane generation from untreated microalgae biomass
Klassen V, Blifernez-Klassen O, Wibberg D, Winkler A, Kalinowski J, Posten C, Kruse O (2017)
Biotechnology for Biofuels 10(1): 186.
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Klassen V, Blifernez-Klassen O, Wibberg D, Winkler A, Kalinowski J, Posten C, Kruse O (2017)
Biotechnology for Biofuels 10(1): 186.
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910668

A Mitochondrial Autonomously Replicating Sequence from Pichia pastoris for Uniform High Level Recombinant Protein Production
Friehs K, Schwarzhans JP, Luttermann T, Wibberg D, Winkler A, Hübner W, Huser T, Kalinowski J (2017)
Frontiers in Microbiology 8: 780.
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Friehs K, Schwarzhans JP, Luttermann T, Wibberg D, Winkler A, Hübner W, Huser T, Kalinowski J (2017)
Frontiers in Microbiology 8: 780.
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908419

Genome Sequence of the Symbiotic Type Strain Rhizobium tibeticum CCBAU85039T
Torres Tejerizo GA, Wibberg D, Winkler A, Ormeño-Orrillo E, Martínez-Romero E, Niehaus K, Pühler A, Kalinowski J, Lagares A, Schlüter A, Pistorio M (2017)
Genome Announcements 5(4): e01513-16.
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Torres Tejerizo GA, Wibberg D, Winkler A, Ormeño-Orrillo E, Martínez-Romero E, Niehaus K, Pühler A, Kalinowski J, Lagares A, Schlüter A, Pistorio M (2017)
Genome Announcements 5(4): e01513-16.
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910373
Identification of a novel mycovirus isolated from Rhizoctonia solani (AG 2-2 IV) provides further information about genome plasticity within the order Tymovirales
Bartholomäus A, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M (2017)
Archives of Virology 162(2): 555-559.
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Bartholomäus A, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M (2017)
Archives of Virology 162(2): 555-559.
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914537
Isolation and whole genome analysis of endospore-forming bacteria from heroin.
Kalinowski J, Ahrens B, Al-Dilaimi A, Winkler A, Wibberg D, Schleenbecker U, Rückert C, Wölfel R, Grass G (2017)
Forensic Sci Int Genet 32: 1-6.
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Kalinowski J, Ahrens B, Al-Dilaimi A, Winkler A, Wibberg D, Schleenbecker U, Rückert C, Wölfel R, Grass G (2017)
Forensic Sci Int Genet 32: 1-6.
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913403
Linking secondary metabolites to biosynthesis genes in the fungal endophyte Cyanodermella asteris: The anti-cancer bisanthraquinone skyrin.
Jahn L, Schafhauser T, Wibberg D, Rückert C, Winkler A, Kulik A, Weber T, Flor L, van Pée K-H, Kalinowski J, Ludwig-Müller J, et al. (2017)
Journal of Biotechnology 257: 233-239.
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Jahn L, Schafhauser T, Wibberg D, Rückert C, Winkler A, Kulik A, Weber T, Flor L, van Pée K-H, Kalinowski J, Ludwig-Müller J, et al. (2017)
Journal of Biotechnology 257: 233-239.
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911777
Genome sequence of Methanobacterium congolense strain Buetzberg, a hydrogenotrophic, methanogenic archaeon, isolated from a mesophilic industrial-scale biogas plant utilizing bio-waste
Torres Tejerizo GA, Kim YS, Maus I, Wibberg D, Winkler A, Off S, Pühler A, Scherer P, Schlüter A (2017)
Journal of Biotechnology 247: 1-5.
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Torres Tejerizo GA, Kim YS, Maus I, Wibberg D, Winkler A, Off S, Pühler A, Scherer P, Schlüter A (2017)
Journal of Biotechnology 247: 1-5.
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907431
Deep Sequencing Analysis Reveals the Mycoviral Diversity of the Virome of an Avirulent Isolate of Rhizoctonia solani AG-2-2 IV
Bartholomaeus A, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M (2016)
PLOS ONE 11(11): e0165965.
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Bartholomaeus A, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M (2016)
PLOS ONE 11(11): e0165965.
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905634
Deciphering the Transcriptional Response Mediated by the Redox-Sensing System HbpS-SenS-SenR from Streptomycetes
Busche T, Winkler A, Wedderhoff I, Rückert C, Kalinowski J, Lucana DO de O (2016)
PLOS ONE 11(8): e0159873.
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Busche T, Winkler A, Wedderhoff I, Rückert C, Kalinowski J, Lucana DO de O (2016)
PLOS ONE 11(8): e0159873.
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901383
Isolation and genome sequencing of four Arctic marine Psychrobacter strains exhibiting multicopper oxidase activity.
Moghadam MS, Albersmeier A, Winkler A, Cimmino L, Rise K, Hohmann-Marriott MF, Kalinowski J, Rückert C, Wentzel A, Lale R (2016)
BMC Genomics 17(1): 117.
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Moghadam MS, Albersmeier A, Winkler A, Cimmino L, Rise K, Hohmann-Marriott MF, Kalinowski J, Rückert C, Wentzel A, Lale R (2016)
BMC Genomics 17(1): 117.
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903655

Integration event induced changes in recombinant protein productivity in Pichia pastoris discovered by whole genome sequencing and derived vector optimization
Schwarzhans JP, Wibberg D, Winkler A, Luttermann T, Kalinowski J, Friehs K (2016)
Microbial Cell Factories 15(1): 84.
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Schwarzhans JP, Wibberg D, Winkler A, Luttermann T, Kalinowski J, Friehs K (2016)
Microbial Cell Factories 15(1): 84.
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904993

Complete Genome Sequence of Herbinix luporumSD1D, a New Cellulose-Degrading Bacterium Isolated from a Thermophilic Biogas Reactor
Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2016)
Genome Announcements 4(4): e00687-16.
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Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2016)
Genome Announcements 4(4): e00687-16.
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904970

Complete Genome Sequence of the MethanogenMethanoculleus bourgensisBA1 Isolated from a Biogas Reactor
Maus I, Wibberg D, Winkler A, Pühler A, Schnürer A, Schlüter A (2016)
Genome Announcements 4(3): e00568-16.
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Maus I, Wibberg D, Winkler A, Pühler A, Schnürer A, Schlüter A (2016)
Genome Announcements 4(3): e00568-16.
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904978

Draft Genome Sequence of Propionisporasp. Strain 2/2-37, a New Xylan-Degrading Bacterium Isolated from a Mesophilic Biogas Reactor
Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2016)
Genome Announcements 4(3): e00609-16.
PUB
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Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2016)
Genome Announcements 4(3): e00609-16.
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907676

Complete Genome Sequence of the Barley Pathogen Xanthomonas translucens pv. translucens DSM 18974 T (ATCC 19319 T)
Jaenicke S, Bunk B, Wibberg D, Spröer C, Hersemann L, Blom J, Winkler A, Schatschneider S, Albaum S, Kölliker R, Goesmann A, et al. (2016)
Genome Announcements 4(6): e01334-16.
PUB
| PDF | DOI | WoS | PubMed | Europe PMC
Jaenicke S, Bunk B, Wibberg D, Spröer C, Hersemann L, Blom J, Winkler A, Schatschneider S, Albaum S, Kölliker R, Goesmann A, et al. (2016)
Genome Announcements 4(6): e01334-16.
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907679

Non-canonical integration events in Pichia pastoris encountered during standard transformation analysed with genome sequencing
Schwarzhans JP, Wibberg D, Winkler A, Luttermann T, Kalinowski J, Friehs K (2016)
Scientific Reports 6(1): 38952.
PUB
| PDF | DOI | WoS | PubMed | Europe PMC
Schwarzhans JP, Wibberg D, Winkler A, Luttermann T, Kalinowski J, Friehs K (2016)
Scientific Reports 6(1): 38952.
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907685

Complete genome sequence of the actinomycete Actinoalloteichus hymeniacidonis type strain HPA 177T isolated from a marine sponge
Schaffert L, Albersmeier A, Winkler A, Kalinowski J, Zotchev SB, Rückert C (2016)
Standards in Genomic Sciences 11(1): 91.
PUB
| PDF | DOI | WoS | PubMed | Europe PMC
Schaffert L, Albersmeier A, Winkler A, Kalinowski J, Zotchev SB, Rückert C (2016)
Standards in Genomic Sciences 11(1): 91.
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904976

Complete Chloroplast and Mitochondrial Genome Sequences of the Hydrocarbon Oil-Producing Green MicroalgaBotryococcus brauniiRace B (Showa)
Blifernez-Klassen O, Wibberg D, Winkler A, Blom J, Goesmann A, Kalinowski J, Kruse O (2016)
Genome Announcements 4(3): e00524-16.
PUB
| PDF | DOI | WoS | PubMed | Europe PMC
Blifernez-Klassen O, Wibberg D, Winkler A, Blom J, Goesmann A, Kalinowski J, Kruse O (2016)
Genome Announcements 4(3): e00524-16.
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906715
Corrigendum to "Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant (J. Biotechnol. 188 (2014) 136–137)")"
Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2016)
Journal of Biotechnology 237: 35.
PUB | DOI | WoS | PubMed | Europe PMC
Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2016)
Journal of Biotechnology 237: 35.
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904704
Complete mitochondrial genome of the scleractinian coral Porites rus
Celis JS, Wibberg D, Winkler A, Wilke T, Kalinowski J (2016)
Mitochondrial DNA 27(5): 3695-3696.
PUB | DOI | WoS | PubMed | Europe PMC
Celis JS, Wibberg D, Winkler A, Wilke T, Kalinowski J (2016)
Mitochondrial DNA 27(5): 3695-3696.
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2902126
Taxonomic analysis of the microbial community in stored sugar beets using high-throughput sequencing of different marker genes
Liebe S, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M (2016)
FEMS Microbiology Ecology 92(2): fiw004.
PUB | DOI | WoS | PubMed | Europe PMC
Liebe S, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M (2016)
FEMS Microbiology Ecology 92(2): fiw004.
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901675
Intraspecies transfer of the chromosomally encoded Acinetobacter baumannii blaNDM-1 carbapenemase gene.
Krahn T, Wibberg D, Maus I, Winkler A, Bontron S, Sczyrba A, Nordmann P, Pühler A, Poirel L, Schlüter A (2016)
Antimicrobial Agents and Chemotherapy 60(5): 3032-3040.
PUB | DOI | WoS | PubMed | Europe PMC
Krahn T, Wibberg D, Maus I, Winkler A, Bontron S, Sczyrba A, Nordmann P, Pühler A, Poirel L, Schlüter A (2016)
Antimicrobial Agents and Chemotherapy 60(5): 3032-3040.
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905504
Comparative transcriptome analysis of the biocontrol strain Bacillus amyloliquefaciens FZB42 as response to biofilm formation analyzed by RNA sequencing
Kröber M, Verwaaijen B, Wibberg D, Winkler A, Pühler A, Schlüter A (2016)
Journal of Biotechnology 231: 212-223.
PUB | DOI | WoS | PubMed | Europe PMC
Kröber M, Verwaaijen B, Wibberg D, Winkler A, Pühler A, Schlüter A (2016)
Journal of Biotechnology 231: 212-223.
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764906

Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant
Bremges A, Maus I, Belmann P, Eikmeyer FG, Winkler A, Albersmeier A, Pühler A, Schlüter A, Sczyrba A (2015)
GigaScience 4(1): 33.
PUB
| PDF | DOI | WoS | PubMed | Europe PMC
Bremges A, Maus I, Belmann P, Eikmeyer FG, Winkler A, Albersmeier A, Pühler A, Schlüter A, Sczyrba A (2015)
GigaScience 4(1): 33.
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911748
Complete Genome Sequence ofAcinetobacter baumanniiCIP 70.10, a Susceptible Reference Strain for Comparative Genome Analyses
Krahn T, Wibberg D, Maus I, Winkler A, Pühler A, Poirel L, Schlüter A (2015)
Genome Announcements 3(4): e00850-15.
PUB | DOI | WoS | PubMed | Europe PMC
Krahn T, Wibberg D, Maus I, Winkler A, Pühler A, Poirel L, Schlüter A (2015)
Genome Announcements 3(4): e00850-15.
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2753051
Complete Genome Sequence of Corynebacterium kutscheri DSM 20755, a Corynebacterial Type Strain with Remarkably Low G+C Content of Chromosomal DNA
Rückert C, Albersmeier A, Winkler A, Tauch A (2015)
Genome announcements 3(3): e00571-15.
PUB | DOI | WoS | PubMed | Europe PMC
Rückert C, Albersmeier A, Winkler A, Tauch A (2015)
Genome announcements 3(3): e00571-15.
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2753057
Complete Genome Sequence of Corynebacterium camporealensis DSM 44610, Isolated from the Milk of a Manchega Sheep with Subclinical Mastitis
Rückert C, Albersmeier A, Winkler A, Tauch A (2015)
Genome announcements 3(3): e00572-15.
PUB | DOI | WoS | PubMed | Europe PMC
Rückert C, Albersmeier A, Winkler A, Tauch A (2015)
Genome announcements 3(3): e00572-15.
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2761035
Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum
Arnold M, Wibberg D, Blom J, Schatschneider S, Winkler A, Kutter Y, Rückert C, Albersmeier A, Albaum S, Goesmann A, Zange S, et al. (2015)
Genome announcements 3(4): e00680-15.
PUB | DOI | WoS | PubMed | Europe PMC
Arnold M, Wibberg D, Blom J, Schatschneider S, Winkler A, Kutter Y, Rückert C, Albersmeier A, Albaum S, Goesmann A, Zange S, et al. (2015)
Genome announcements 3(4): e00680-15.
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2769395
Complete Genome Sequence of the Type Strain Corynebacterium epidermidicanis DSM 45586, Isolated from the Skin of a Dog Suffering from Pruritus
Rückert C, Eimer J, Winkler A, Tauch A (2015)
Genome announcements 3(4): e00959-15.
PUB | DOI | WoS | PubMed | Europe PMC
Rückert C, Eimer J, Winkler A, Tauch A (2015)
Genome announcements 3(4): e00959-15.
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2765190
Virulence Factor Genes Detected in the Complete Genome Sequence of Corynebacterium uterequi DSM 45634, Isolated from the Uterus of a Maiden Mare
Rückert C, Kriete M, Jaenicke S, Winkler A, Tauch A (2015)
Genome announcements 3(4): e00783-15.
PUB | DOI | WoS | PubMed | Europe PMC
Rückert C, Kriete M, Jaenicke S, Winkler A, Tauch A (2015)
Genome announcements 3(4): e00783-15.
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2765197
Complete Genome Sequence of the Type Strain Corynebacterium testudinoris DSM 44614, Recovered from Necrotic Lesions in the Mouth of a Tortoise
Rückert C, Kriete M, Jaenicke S, Winkler A, Tauch A (2015)
Genome announcements 3(4): e00784-15.
PUB | DOI | WoS | PubMed | Europe PMC
Rückert C, Kriete M, Jaenicke S, Winkler A, Tauch A (2015)
Genome announcements 3(4): e00784-15.
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2775257
Complete Genome Sequence of the Type Strain Corynebacterium mustelae DSM 45274, Isolated from Various Tissues of a Male Ferret with Lethal Sepsis
Rückert C, Eimer J, Winkler A, Tauch A (2015)
Genome announcements 3(5): e01012-15.
PUB | DOI | WoS | PubMed | Europe PMC
Rückert C, Eimer J, Winkler A, Tauch A (2015)
Genome announcements 3(5): e01012-15.
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2785064

Complete Genome Sequence of the Clinical Strain Acinetobacter baumannii R2090 Carrying the Chromosomally Encoded Metallo-β-Lactamase GeneblaNDM-1
Krahn T, Wibberg D, Maus I, Winkler A, Nordmann P, Pühler A, Poirel L, Schlüter A (2015)
Genome Announcements 3(5): e01008-15.
PUB
| PDF | DOI | WoS | PubMed | Europe PMC
Krahn T, Wibberg D, Maus I, Winkler A, Nordmann P, Pühler A, Poirel L, Schlüter A (2015)
Genome Announcements 3(5): e01008-15.
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758144
Improved genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 as established by deep mate-pair sequencing on the MiSeq (Illumina) system
Wibberg D, Rupp O, Jelonek L, Kröber M, Verwaaijen B, Blom J, Winkler A, Goesmann A, Grosch R, Pühler A, Schlüter A (2015)
Journal of Biotechnology 203: 19-21.
PUB | DOI | WoS | PubMed | Europe PMC
Wibberg D, Rupp O, Jelonek L, Kröber M, Verwaaijen B, Blom J, Winkler A, Goesmann A, Grosch R, Pühler A, Schlüter A (2015)
Journal of Biotechnology 203: 19-21.
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764512
Complete genome sequence of Rhodococcus erythropolis BG43 (DSM 46869), a degrader of Pseudomonas aeruginosa quorum sensing signal molecules
Rückert C, Birmes FS, Müller C, Niewerth H, Winkler A, Fetzner S, Kalinowski J (2015)
Journal of biotechnology 211: 99-100.
PUB | DOI | WoS | PubMed | Europe PMC
Rückert C, Birmes FS, Müller C, Niewerth H, Winkler A, Fetzner S, Kalinowski J (2015)
Journal of biotechnology 211: 99-100.
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2709783
Complete Genome Sequence of the Actinobacterium Streptomyces glaucescens GLA.O (DSM 40922) consisting of a linear chromosome and one linear plasmid
Ortseifen V, Winkler A, Albersmeier A, Wendler S, Pühler A, Kalinowski J, Rückert C (2015)
Journal of Biotechnology 194: 81-83.
PUB | DOI | WoS | PubMed | Europe PMC
Ortseifen V, Winkler A, Albersmeier A, Wendler S, Pühler A, Kalinowski J, Rückert C (2015)
Journal of Biotechnology 194: 81-83.
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758122
Draft genome of the xanthan producer Xanthomonas campestris NRRL B-1459 (ATCC 13951)
Wibberg D, Alkhateeb R, Winkler A, Albersmeier A, Schatschneider S, Albaum S, Niehaus K, Hublik G, Pühler A, Vorhölter F-J (2015)
Journal of Biotechnology 204: 45-46.
PUB | DOI | WoS | PubMed | Europe PMC
Wibberg D, Alkhateeb R, Winkler A, Albersmeier A, Schatschneider S, Albaum S, Niehaus K, Hublik G, Pühler A, Vorhölter F-J (2015)
Journal of Biotechnology 204: 45-46.
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758134
Complete genome sequence of the strain Defluviitoga tunisiensis L3, isolated from a thermophilic, production-scale biogas plant
Maus I, Cibis KG, Wibberg D, Winkler A, Stolze Y, König H, Pühler A, Schlüter A (2015)
Journal of Biotechnology 203: 17-18.
PUB | DOI | WoS | PubMed | Europe PMC
Maus I, Cibis KG, Wibberg D, Winkler A, Stolze Y, König H, Pühler A, Schlüter A (2015)
Journal of Biotechnology 203: 17-18.
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2719877
Complete genome sequence of Streptomyces lividans TK24
Rückert C, Albersmeier A, Busche T, Jaenicke S, Winkler A, Friðjónsson ÓH, Hreggviðsson GÓ, Lambert C, Badcock D, Bernaerts K, Anne J, et al. (2015)
Journal of Biotechnology 199: 21-22.
PUB | DOI | WoS | PubMed | Europe PMC
Rückert C, Albersmeier A, Busche T, Jaenicke S, Winkler A, Friðjónsson ÓH, Hreggviðsson GÓ, Lambert C, Badcock D, Bernaerts K, Anne J, et al. (2015)
Journal of Biotechnology 199: 21-22.
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901214
Draft genome sequence of Herbinix hemicellulosilytica T3/55(T), a new thermophilic cellulose degrading bacterium isolated from a thermophilic biogas reactor
Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2015)
Journal of Biotechnology 214: 59-60.
PUB | DOI | WoS | PubMed | Europe PMC
Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2015)
Journal of Biotechnology 214: 59-60.
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764185
Draft genome sequence of Talaromyces islandicus ("Penicillium islandicum") WF-38-12, a neglected mold with significant biotechnological potential
Schafhauser T, Wibberg D, Rückert C, Winkler A, Flor L, van Pée K-H, Fewer DP, Sivonen K, Jahn L, Ludwig-Müller J, Caradec T, et al. (2015)
Journal of Biotechnology 211: 101-102.
PUB | DOI | WoS | PubMed | Europe PMC
Schafhauser T, Wibberg D, Rückert C, Winkler A, Flor L, van Pée K-H, Fewer DP, Sivonen K, Jahn L, Ludwig-Müller J, Caradec T, et al. (2015)
Journal of Biotechnology 211: 101-102.
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689746
Complete genome sequence of Bacillus methanolicus MGA3, a thermotolerant amino acid producing methylotroph
Irla M, Neshat A, Winkler A, Albersmeier A, Heggeset TM, Brautaset T, Kalinowski J, Wendisch VF, Rückert C (2014)
Journal of Biotechnology 188: 110-111.
PUB | DOI | WoS | PubMed | Europe PMC
Irla M, Neshat A, Winkler A, Albersmeier A, Heggeset TM, Brautaset T, Kalinowski J, Wendisch VF, Rückert C (2014)
Journal of Biotechnology 188: 110-111.
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717539
Complete genome sequence of the methanogenic neotype strain Methanobacterium formicicum MFT
Maus I, Stantscheff R, Wibberg D, Stolze Y, Winkler A, Pühler A, König H, Schlüter A (2014)
Journal of Biotechnology 192: 40-41.
PUB | DOI | WoS | PubMed | Europe PMC
Maus I, Stantscheff R, Wibberg D, Stolze Y, Winkler A, Pühler A, König H, Schlüter A (2014)
Journal of Biotechnology 192: 40-41.
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2707731
Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant
Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2014)
Journal of Biotechnology 188: 136-137.
PUB | DOI | WoS | PubMed | Europe PMC
Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2014)
Journal of Biotechnology 188: 136-137.
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2633427
Draft Genome Sequence of Sinorhizobium meliloti RU11/001, a model organism for flagellum structure, motility and chemotaxis
Wibberg D, Blom J, Rückert C, Winkler A, Albersmeier A, Pühler A, Schlüter A, Scharf BE (2013)
Journal of Biotechnology 168(4): 731-733.
PUB | DOI | WoS | PubMed | Europe PMC
Wibberg D, Blom J, Rückert C, Winkler A, Albersmeier A, Pühler A, Schlüter A, Scharf BE (2013)
Journal of Biotechnology 168(4): 731-733.
72 Publikationen
2022 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2964659
psi-Footprinting approach for the identification of protein synthesis inhibitor producers
Handel F, Kulik A, Wex KW, Berscheid A, Saur JS, Winkler A, Wibberg D, Kalinowski J, Broetz-Oesterhelt H, Mast Y (2022)
NAR: Genomics and Bioinformatics 4(3): lqac055.
PUB | DOI | WoS | PubMed | Europe PMC
Handel F, Kulik A, Wex KW, Berscheid A, Saur JS, Winkler A, Wibberg D, Kalinowski J, Broetz-Oesterhelt H, Mast Y (2022)
NAR: Genomics and Bioinformatics 4(3): lqac055.
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2956428
A Regulator Based "Semi-Targeted" Approach to Activate Silent Biosynthetic Gene Clusters
Mingyar E, Muhling L, Kulik A, Winkler A, Wibberg D, Kalinowski J, Blin K, Weber T, Wohlleben W, Stegmann E (2021)
International journal of molecular sciences 22(14): 7567.
PUB | DOI | WoS | PubMed | Europe PMC
Mingyar E, Muhling L, Kulik A, Winkler A, Wibberg D, Kalinowski J, Blin K, Weber T, Wohlleben W, Stegmann E (2021)
International journal of molecular sciences 22(14): 7567.
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2955526
Pseudomonas paraversuta sp. nov. isolated from refrigerated dry-aged beef.
Lick S, Wibberg D, Winkler A, Blom J, Grimmler C, Goesmann A, Kalinowski J, Krockel L (2021)
International journal of systematic and evolutionary microbiology 71(6).
PUB | DOI | WoS | PubMed | Europe PMC
Lick S, Wibberg D, Winkler A, Blom J, Grimmler C, Goesmann A, Kalinowski J, Krockel L (2021)
International journal of systematic and evolutionary microbiology 71(6).
2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2951146
Streptomyces dysideae sp. nov., isolated from a marine Mediterranean sponge Dysidea tupha.
Glaeser SP, Rückert C, Abdelmohsen UR, Winkler A, Blom J, Goesmann A, Kalinowski J, Hentschel U, Busse H-J, Kampfer P (2021)
International journal of systematic and evolutionary microbiology.
PUB | DOI | WoS | PubMed | Europe PMC
Glaeser SP, Rückert C, Abdelmohsen UR, Winkler A, Blom J, Goesmann A, Kalinowski J, Hentschel U, Busse H-J, Kampfer P (2021)
International journal of systematic and evolutionary microbiology.
2021 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2950292

Phytoplankton consortia as a blueprint for mutually beneficial eukaryote-bacteria ecosystems based on the biocoenosis of Botryococcus consortia
Blifernez-Klassen O, Klassen V, Wibberg D, Cebeci E, Henke C, Rückert C, Chaudhari S, Rupp O, Blom J, Winkler A, Al-Dilaimi A, et al. (2021)
Scientific Reports 11(1): 1726.
PUB
| PDF | DOI | WoS | PubMed | Europe PMC
Blifernez-Klassen O, Klassen V, Wibberg D, Cebeci E, Henke C, Rückert C, Chaudhari S, Rupp O, Blom J, Winkler A, Al-Dilaimi A, et al. (2021)
Scientific Reports 11(1): 1726.
2021 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2949961
Global transcriptome analysis of Rhizobium favelukesii LPU83 in response to acid stress
Nilsson JF, Castellani LG, Draghi WO, Mogro EG, Wibberg D, Winkler A, Hansen LH, Schlüter A, Pühler A, Kalinowski J, Torres Tejerizo GA, et al. (2021)
FEMS Microbiology Ecology 97(1): fiaa235.
PUB | DOI | WoS | PubMed | Europe PMC
Nilsson JF, Castellani LG, Draghi WO, Mogro EG, Wibberg D, Winkler A, Hansen LH, Schlüter A, Pühler A, Kalinowski J, Torres Tejerizo GA, et al. (2021)
FEMS Microbiology Ecology 97(1): fiaa235.
2020 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2948760
Genome sequence of Bradyrhizobium yuanmingense strain P10 130, a highly efficient nitrogen-fixing bacterium that could be used for Desmodium incanum inoculation.
Toniutti MA, Albicoro FJ, Castellani LG, Lopez Garcia SL, Fornasero LV, Zuber NE, Vera LM, Vacca C, Cafiero JH, Winkler A, Kalinowski J, et al. (2020)
Gene.
PUB | DOI | WoS | PubMed | Europe PMC
Toniutti MA, Albicoro FJ, Castellani LG, Lopez Garcia SL, Fornasero LV, Zuber NE, Vera LM, Vacca C, Cafiero JH, Winkler A, Kalinowski J, et al. (2020)
Gene.
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2937242
Whole-Genome Sequence of Pseudoalteromonas sp. NC201, a Probiotic Strain for Litopenaeus stylirostris Hatcheries in New Caledonia
Sorieul L, Rückert C, Al-Dilaimi A, Winkler A, Kalinowski J, Pham D, Wabete N, Boulo V (2019)
Microbiology resource announcements 8(34): e00477-19.
PUB | DOI | WoS | PubMed | Europe PMC
Sorieul L, Rückert C, Al-Dilaimi A, Winkler A, Kalinowski J, Pham D, Wabete N, Boulo V (2019)
Microbiology resource announcements 8(34): e00477-19.
2019 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2938561
Pseudomonas bubulae sp. nov., isolated from beef.
Lick S, Krockel L, Wibberg D, Winkler A, Blom J, Goesmann A, Kalinowski J (2019)
International journal of systematic and evolutionary microbiology 70(1): 292-301.
PUB | DOI | WoS | PubMed | Europe PMC
Lick S, Krockel L, Wibberg D, Winkler A, Blom J, Goesmann A, Kalinowski J (2019)
International journal of systematic and evolutionary microbiology 70(1): 292-301.
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2936839

Genetic Potential of the Biocontrol Agent Pseudomonas brassicacearum (Formerly P. trivialis) 3Re2-7 Unraveled by Genome Sequencing and Mining, Comparative Genomics and Transcriptomics
Nelkner J, Tejerizo GT, Hassa J, Lin TW, Witte J, Verwaaijen B, Winkler A, Bunk B, Spröer C, Overmann J, Grosch R, et al. (2019)
Genes 10(8): 601.
PUB
| PDF | DOI | WoS | PubMed | Europe PMC
Nelkner J, Tejerizo GT, Hassa J, Lin TW, Witte J, Verwaaijen B, Winkler A, Bunk B, Spröer C, Overmann J, Grosch R, et al. (2019)
Genes 10(8): 601.
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2935556

A comprehensive analysis of the Lactuca sativa, L. transcriptome during different stages of the compatible interaction with Rhizoctonia solani
Verwaaijen B, Wibberg D, Winkler A, Zrenner R, Bednarz H, Niehaus K, Grosch R, Pühler A, Schlüter A (2019)
Scientific Reports 9(1): 7221.
PUB
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Verwaaijen B, Wibberg D, Winkler A, Zrenner R, Bednarz H, Niehaus K, Grosch R, Pühler A, Schlüter A (2019)
Scientific Reports 9(1): 7221.
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932964
Harvest of the Oleaginous Microalgae Scenedesmus obtusiusculus by Flocculation From Culture Based on Natural Water Sources
Bracharz F, Helmdach D, Aschenbrenner I, Funck N, Wibberg D, Winkler A, Bohnen F, Kalinowski J, Mehlmer N, Brueck TB (2018)
FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY 6: 200.
PUB | DOI | WoS | PubMed | Europe PMC
Bracharz F, Helmdach D, Aschenbrenner I, Funck N, Wibberg D, Winkler A, Bohnen F, Kalinowski J, Mehlmer N, Brueck TB (2018)
FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY 6: 200.
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932979
Biodegradation of dispersed oil in natural seawaters from Western Greenland and a Norwegian fjord
Brakstad OG, Davies EJ, Ribicic D, Winkler A, Bronner U, Netzer R (2018)
POLAR BIOLOGY 41(12): 2435-2450.
PUB | DOI | WoS
Brakstad OG, Davies EJ, Ribicic D, Winkler A, Bronner U, Netzer R (2018)
POLAR BIOLOGY 41(12): 2435-2450.
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920777
Binning Enables Efficient Host Genome Reconstruction in Cnidarian Holobionts
Celis JS, Wibberg D, Ramírez-Portilla C, Rupp O, Sczyrba A, Winkler A, Kalinowski J, Wilke T (2018)
GigaScience 7(7): giy075.
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Celis JS, Wibberg D, Ramírez-Portilla C, Rupp O, Sczyrba A, Winkler A, Kalinowski J, Wilke T (2018)
GigaScience 7(7): giy075.
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920680
Comparative genomics reveals phylogenetic distribution patterns of secondary metabolites in Amycolatopsis species
Adamek M, Alanjary M, Sales-Ortells H, Goodfellow M, Bull AT, Winkler A, Wibberg D, Kalinowski J, Ziemert N (2018)
BMC GENOMICS 19(1): 15.
PUB | DOI | WoS | PubMed | Europe PMC
Adamek M, Alanjary M, Sales-Ortells H, Goodfellow M, Bull AT, Winkler A, Wibberg D, Kalinowski J, Ziemert N (2018)
BMC GENOMICS 19(1): 15.
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930633
Oil type and temperature dependent biodegradation dynamics - Combining chemical and microbial community data through multivariate analysis
Ribicic D, McFarlin KM, Netzer R, Brakstad OG, Winkler A, Throne-Holst M, Storseth TR (2018)
BMC MICROBIOLOGY 18(1): 83.
PUB | DOI | WoS | PubMed | Europe PMC
Ribicic D, McFarlin KM, Netzer R, Brakstad OG, Winkler A, Throne-Holst M, Storseth TR (2018)
BMC MICROBIOLOGY 18(1): 83.
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919058
The secreted metabolome of Streptomyces chartreusis and implications for bacterial chemistry
Senges CHR, Al-Dilaimi A, Marchbank DH, Wibberg D, Winkler A, Haltli B, Nowrousian M, Kalinowski J, Kerr RG, Bandow JE (2018)
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 115(10): 2490-2495.
PUB | DOI | WoS | PubMed | Europe PMC
Senges CHR, Al-Dilaimi A, Marchbank DH, Wibberg D, Winkler A, Haltli B, Nowrousian M, Kalinowski J, Kerr RG, Bandow JE (2018)
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 115(10): 2490-2495.
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916925
Individual- and Species-Specific Skin Microbiomes in Three Different Estrildid Finch Species Revealed by 16S Amplicon Sequencing
Engel K, Sauer J, Jünemann S, Winkler A, Wibberg D, Kalinowski J, Tauch A, Caspers B (2018)
Microbial Ecology 76(2): 518-529.
PUB | DOI | WoS | PubMed | Europe PMC
Engel K, Sauer J, Jünemann S, Winkler A, Wibberg D, Kalinowski J, Tauch A, Caspers B (2018)
Microbial Ecology 76(2): 518-529.
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918969

Complete Genome Sequence of Streptomyces lavendulae subsp. lavendulae CCM 3239 (Formerly “Streptomyces aureofaciens CCM 3239”), a Producer of the Angucycline-Type Antibiotic Auricin
Busche T, Novakova R, Al'Dilaimi A, Homerova D, Feckova L, Rezuchova B, Mingyar E, Csolleiova D, Bekeova C, Winkler A, Sevcikova B, et al. (2018)
Genome Announcements 6(9): e00103-18.
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Busche T, Novakova R, Al'Dilaimi A, Homerova D, Feckova L, Rezuchova B, Mingyar E, Csolleiova D, Bekeova C, Winkler A, Sevcikova B, et al. (2018)
Genome Announcements 6(9): e00103-18.
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2917037
Assembly of the Lactuca sativa, L. cv. Tizian draft genome sequence reveals differences within major resistance complex 1 as compared to the cv. Salinas reference genome
Verwaaijen B, Wibberg D, Nelkner J, Gordin M, Rupp O, Winkler A, Bremges A, Blom J, Grosch R, Pühler A, Schlüter A (2018)
Journal of Biotechology 267: 12-18.
PUB | DOI | WoS | PubMed | Europe PMC
Verwaaijen B, Wibberg D, Nelkner J, Gordin M, Rupp O, Winkler A, Bremges A, Blom J, Grosch R, Pühler A, Schlüter A (2018)
Journal of Biotechology 267: 12-18.
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2931970
Comparison of microbial community dynamics induced by distinct crude oil dispersions reveals compositional differences
Ribicic D, Netzer R, Winkler A, Brakstad OG (2018)
JOURNAL OF SEA RESEARCH 141: 112-118.
PUB | DOI | WoS
Ribicic D, Netzer R, Winkler A, Brakstad OG (2018)
JOURNAL OF SEA RESEARCH 141: 112-118.
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920334
Biodegradation of dispersed oil in seawater is not inhibited by a commercial oil spill dispersant
Brakstad OG, Ribicic D, Winkler A, Netzer R (2018)
MARINE POLLUTION BULLETIN 129(2): 555-561.
PUB | DOI | WoS | PubMed | Europe PMC
Brakstad OG, Ribicic D, Winkler A, Netzer R (2018)
MARINE POLLUTION BULLETIN 129(2): 555-561.
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920701
Microbial communities in seawater from an Arctic and a temperate Norwegian fjord and their potentials for biodegradation of chemically dispersed oil at low seawater temperatures
Ribicic D, Netzer R, Winkler A, Brakstad OG (2018)
MARINE POLLUTION BULLETIN 129(1): 308-317.
PUB | DOI | WoS | PubMed | Europe PMC
Ribicic D, Netzer R, Winkler A, Brakstad OG (2018)
MARINE POLLUTION BULLETIN 129(1): 308-317.
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2920259
On the Enigma of Glutathione-Dependent Styrene Degradation in Gordonia rubripertincta CWB2
Heine T, Zimmerling J, Ballmann A, Kleeberg SB, Rückert C, Busche T, Winkler A, Kalinowski J, Poetsch A, Scholtissek A, Oelschlaegel M, et al. (2018)
APPLIED AND ENVIRONMENTAL MICROBIOLOGY 84(9): 16.
PUB | DOI | WoS | PubMed | Europe PMC
Heine T, Zimmerling J, Ballmann A, Kleeberg SB, Rückert C, Busche T, Winkler A, Kalinowski J, Poetsch A, Scholtissek A, Oelschlaegel M, et al. (2018)
APPLIED AND ENVIRONMENTAL MICROBIOLOGY 84(9): 16.
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918672
Differential transcriptomic analysis reveals hidden light response in Streptomyces lividans
Koepff J, Morschett H, Busche T, Winkler A, Kalinowski J, Wiechert W, Oldiges M (2018)
BIOTECHNOLOGY PROGRESS 34(1): 287-292.
PUB | DOI | WoS | PubMed | Europe PMC
Koepff J, Morschett H, Busche T, Winkler A, Kalinowski J, Wiechert W, Oldiges M (2018)
BIOTECHNOLOGY PROGRESS 34(1): 287-292.
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912114

The Rhizoctonia solani AG1-IB (isolate 7/3/14) transcriptome during interaction with the host plant lettuce (Lactuca sativa L.)
Verwaaijen B, Wibberg D, Kröber M, Winkler A, Zrenner R, Bednarz H, Niehaus K, Grosch R, Pühler A, Schlüter A (2017)
PLOS ONE 12(5): e0177278.
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Verwaaijen B, Wibberg D, Kröber M, Winkler A, Zrenner R, Bednarz H, Niehaus K, Grosch R, Pühler A, Schlüter A (2017)
PLOS ONE 12(5): e0177278.
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913386

Time-resolved transcriptome analysis and lipid pathway reconstruction of the oleaginous green microalga Monoraphidium neglectum reveal a model for triacylglycerol and lipid hyperaccumulation
Jaeger D, Winkler A, Mussgnug JH, Kalinowski J, Goesmann A, Kruse O (2017)
Biotechnology for Biofuels 10(1): 197.
PUB
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Jaeger D, Winkler A, Mussgnug JH, Kalinowski J, Goesmann A, Kruse O (2017)
Biotechnology for Biofuels 10(1): 197.
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913038

Highly efficient methane generation from untreated microalgae biomass
Klassen V, Blifernez-Klassen O, Wibberg D, Winkler A, Kalinowski J, Posten C, Kruse O (2017)
Biotechnology for Biofuels 10(1): 186.
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Klassen V, Blifernez-Klassen O, Wibberg D, Winkler A, Kalinowski J, Posten C, Kruse O (2017)
Biotechnology for Biofuels 10(1): 186.
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910668

A Mitochondrial Autonomously Replicating Sequence from Pichia pastoris for Uniform High Level Recombinant Protein Production
Friehs K, Schwarzhans JP, Luttermann T, Wibberg D, Winkler A, Hübner W, Huser T, Kalinowski J (2017)
Frontiers in Microbiology 8: 780.
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Friehs K, Schwarzhans JP, Luttermann T, Wibberg D, Winkler A, Hübner W, Huser T, Kalinowski J (2017)
Frontiers in Microbiology 8: 780.
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908419

Genome Sequence of the Symbiotic Type Strain Rhizobium tibeticum CCBAU85039T
Torres Tejerizo GA, Wibberg D, Winkler A, Ormeño-Orrillo E, Martínez-Romero E, Niehaus K, Pühler A, Kalinowski J, Lagares A, Schlüter A, Pistorio M (2017)
Genome Announcements 5(4): e01513-16.
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Torres Tejerizo GA, Wibberg D, Winkler A, Ormeño-Orrillo E, Martínez-Romero E, Niehaus K, Pühler A, Kalinowski J, Lagares A, Schlüter A, Pistorio M (2017)
Genome Announcements 5(4): e01513-16.
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2910373
Identification of a novel mycovirus isolated from Rhizoctonia solani (AG 2-2 IV) provides further information about genome plasticity within the order Tymovirales
Bartholomäus A, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M (2017)
Archives of Virology 162(2): 555-559.
PUB | DOI | WoS | PubMed | Europe PMC
Bartholomäus A, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M (2017)
Archives of Virology 162(2): 555-559.
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2914537
Isolation and whole genome analysis of endospore-forming bacteria from heroin.
Kalinowski J, Ahrens B, Al-Dilaimi A, Winkler A, Wibberg D, Schleenbecker U, Rückert C, Wölfel R, Grass G (2017)
Forensic Sci Int Genet 32: 1-6.
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Kalinowski J, Ahrens B, Al-Dilaimi A, Winkler A, Wibberg D, Schleenbecker U, Rückert C, Wölfel R, Grass G (2017)
Forensic Sci Int Genet 32: 1-6.
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913403
Linking secondary metabolites to biosynthesis genes in the fungal endophyte Cyanodermella asteris: The anti-cancer bisanthraquinone skyrin.
Jahn L, Schafhauser T, Wibberg D, Rückert C, Winkler A, Kulik A, Weber T, Flor L, van Pée K-H, Kalinowski J, Ludwig-Müller J, et al. (2017)
Journal of Biotechnology 257: 233-239.
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Jahn L, Schafhauser T, Wibberg D, Rückert C, Winkler A, Kulik A, Weber T, Flor L, van Pée K-H, Kalinowski J, Ludwig-Müller J, et al. (2017)
Journal of Biotechnology 257: 233-239.
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911777
Genome sequence of Methanobacterium congolense strain Buetzberg, a hydrogenotrophic, methanogenic archaeon, isolated from a mesophilic industrial-scale biogas plant utilizing bio-waste
Torres Tejerizo GA, Kim YS, Maus I, Wibberg D, Winkler A, Off S, Pühler A, Scherer P, Schlüter A (2017)
Journal of Biotechnology 247: 1-5.
PUB | DOI | WoS | PubMed | Europe PMC
Torres Tejerizo GA, Kim YS, Maus I, Wibberg D, Winkler A, Off S, Pühler A, Scherer P, Schlüter A (2017)
Journal of Biotechnology 247: 1-5.
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907431
Deep Sequencing Analysis Reveals the Mycoviral Diversity of the Virome of an Avirulent Isolate of Rhizoctonia solani AG-2-2 IV
Bartholomaeus A, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M (2016)
PLOS ONE 11(11): e0165965.
PUB | DOI | WoS | PubMed | Europe PMC
Bartholomaeus A, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M (2016)
PLOS ONE 11(11): e0165965.
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905634
Deciphering the Transcriptional Response Mediated by the Redox-Sensing System HbpS-SenS-SenR from Streptomycetes
Busche T, Winkler A, Wedderhoff I, Rückert C, Kalinowski J, Lucana DO de O (2016)
PLOS ONE 11(8): e0159873.
PUB | DOI | WoS | PubMed | Europe PMC
Busche T, Winkler A, Wedderhoff I, Rückert C, Kalinowski J, Lucana DO de O (2016)
PLOS ONE 11(8): e0159873.
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901383
Isolation and genome sequencing of four Arctic marine Psychrobacter strains exhibiting multicopper oxidase activity.
Moghadam MS, Albersmeier A, Winkler A, Cimmino L, Rise K, Hohmann-Marriott MF, Kalinowski J, Rückert C, Wentzel A, Lale R (2016)
BMC Genomics 17(1): 117.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Moghadam MS, Albersmeier A, Winkler A, Cimmino L, Rise K, Hohmann-Marriott MF, Kalinowski J, Rückert C, Wentzel A, Lale R (2016)
BMC Genomics 17(1): 117.
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2903655

Integration event induced changes in recombinant protein productivity in Pichia pastoris discovered by whole genome sequencing and derived vector optimization
Schwarzhans JP, Wibberg D, Winkler A, Luttermann T, Kalinowski J, Friehs K (2016)
Microbial Cell Factories 15(1): 84.
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Schwarzhans JP, Wibberg D, Winkler A, Luttermann T, Kalinowski J, Friehs K (2016)
Microbial Cell Factories 15(1): 84.
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904993

Complete Genome Sequence of Herbinix luporumSD1D, a New Cellulose-Degrading Bacterium Isolated from a Thermophilic Biogas Reactor
Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2016)
Genome Announcements 4(4): e00687-16.
PUB
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Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2016)
Genome Announcements 4(4): e00687-16.
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904970

Complete Genome Sequence of the MethanogenMethanoculleus bourgensisBA1 Isolated from a Biogas Reactor
Maus I, Wibberg D, Winkler A, Pühler A, Schnürer A, Schlüter A (2016)
Genome Announcements 4(3): e00568-16.
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Maus I, Wibberg D, Winkler A, Pühler A, Schnürer A, Schlüter A (2016)
Genome Announcements 4(3): e00568-16.
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904978

Draft Genome Sequence of Propionisporasp. Strain 2/2-37, a New Xylan-Degrading Bacterium Isolated from a Mesophilic Biogas Reactor
Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2016)
Genome Announcements 4(3): e00609-16.
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Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2016)
Genome Announcements 4(3): e00609-16.
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907676

Complete Genome Sequence of the Barley Pathogen Xanthomonas translucens pv. translucens DSM 18974 T (ATCC 19319 T)
Jaenicke S, Bunk B, Wibberg D, Spröer C, Hersemann L, Blom J, Winkler A, Schatschneider S, Albaum S, Kölliker R, Goesmann A, et al. (2016)
Genome Announcements 4(6): e01334-16.
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Jaenicke S, Bunk B, Wibberg D, Spröer C, Hersemann L, Blom J, Winkler A, Schatschneider S, Albaum S, Kölliker R, Goesmann A, et al. (2016)
Genome Announcements 4(6): e01334-16.
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907679

Non-canonical integration events in Pichia pastoris encountered during standard transformation analysed with genome sequencing
Schwarzhans JP, Wibberg D, Winkler A, Luttermann T, Kalinowski J, Friehs K (2016)
Scientific Reports 6(1): 38952.
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Schwarzhans JP, Wibberg D, Winkler A, Luttermann T, Kalinowski J, Friehs K (2016)
Scientific Reports 6(1): 38952.
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2907685

Complete genome sequence of the actinomycete Actinoalloteichus hymeniacidonis type strain HPA 177T isolated from a marine sponge
Schaffert L, Albersmeier A, Winkler A, Kalinowski J, Zotchev SB, Rückert C (2016)
Standards in Genomic Sciences 11(1): 91.
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Schaffert L, Albersmeier A, Winkler A, Kalinowski J, Zotchev SB, Rückert C (2016)
Standards in Genomic Sciences 11(1): 91.
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904976

Complete Chloroplast and Mitochondrial Genome Sequences of the Hydrocarbon Oil-Producing Green MicroalgaBotryococcus brauniiRace B (Showa)
Blifernez-Klassen O, Wibberg D, Winkler A, Blom J, Goesmann A, Kalinowski J, Kruse O (2016)
Genome Announcements 4(3): e00524-16.
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Blifernez-Klassen O, Wibberg D, Winkler A, Blom J, Goesmann A, Kalinowski J, Kruse O (2016)
Genome Announcements 4(3): e00524-16.
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2906715
Corrigendum to "Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant (J. Biotechnol. 188 (2014) 136–137)")"
Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2016)
Journal of Biotechnology 237: 35.
PUB | DOI | WoS | PubMed | Europe PMC
Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2016)
Journal of Biotechnology 237: 35.
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2904704
Complete mitochondrial genome of the scleractinian coral Porites rus
Celis JS, Wibberg D, Winkler A, Wilke T, Kalinowski J (2016)
Mitochondrial DNA 27(5): 3695-3696.
PUB | DOI | WoS | PubMed | Europe PMC
Celis JS, Wibberg D, Winkler A, Wilke T, Kalinowski J (2016)
Mitochondrial DNA 27(5): 3695-3696.
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2902126
Taxonomic analysis of the microbial community in stored sugar beets using high-throughput sequencing of different marker genes
Liebe S, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M (2016)
FEMS Microbiology Ecology 92(2): fiw004.
PUB | DOI | WoS | PubMed | Europe PMC
Liebe S, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M (2016)
FEMS Microbiology Ecology 92(2): fiw004.
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901675
Intraspecies transfer of the chromosomally encoded Acinetobacter baumannii blaNDM-1 carbapenemase gene.
Krahn T, Wibberg D, Maus I, Winkler A, Bontron S, Sczyrba A, Nordmann P, Pühler A, Poirel L, Schlüter A (2016)
Antimicrobial Agents and Chemotherapy 60(5): 3032-3040.
PUB | DOI | WoS | PubMed | Europe PMC
Krahn T, Wibberg D, Maus I, Winkler A, Bontron S, Sczyrba A, Nordmann P, Pühler A, Poirel L, Schlüter A (2016)
Antimicrobial Agents and Chemotherapy 60(5): 3032-3040.
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905504
Comparative transcriptome analysis of the biocontrol strain Bacillus amyloliquefaciens FZB42 as response to biofilm formation analyzed by RNA sequencing
Kröber M, Verwaaijen B, Wibberg D, Winkler A, Pühler A, Schlüter A (2016)
Journal of Biotechnology 231: 212-223.
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Kröber M, Verwaaijen B, Wibberg D, Winkler A, Pühler A, Schlüter A (2016)
Journal of Biotechnology 231: 212-223.
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764906

Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant
Bremges A, Maus I, Belmann P, Eikmeyer FG, Winkler A, Albersmeier A, Pühler A, Schlüter A, Sczyrba A (2015)
GigaScience 4(1): 33.
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Bremges A, Maus I, Belmann P, Eikmeyer FG, Winkler A, Albersmeier A, Pühler A, Schlüter A, Sczyrba A (2015)
GigaScience 4(1): 33.
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911748
Complete Genome Sequence ofAcinetobacter baumanniiCIP 70.10, a Susceptible Reference Strain for Comparative Genome Analyses
Krahn T, Wibberg D, Maus I, Winkler A, Pühler A, Poirel L, Schlüter A (2015)
Genome Announcements 3(4): e00850-15.
PUB | DOI | WoS | PubMed | Europe PMC
Krahn T, Wibberg D, Maus I, Winkler A, Pühler A, Poirel L, Schlüter A (2015)
Genome Announcements 3(4): e00850-15.
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2753051
Complete Genome Sequence of Corynebacterium kutscheri DSM 20755, a Corynebacterial Type Strain with Remarkably Low G+C Content of Chromosomal DNA
Rückert C, Albersmeier A, Winkler A, Tauch A (2015)
Genome announcements 3(3): e00571-15.
PUB | DOI | WoS | PubMed | Europe PMC
Rückert C, Albersmeier A, Winkler A, Tauch A (2015)
Genome announcements 3(3): e00571-15.
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2753057
Complete Genome Sequence of Corynebacterium camporealensis DSM 44610, Isolated from the Milk of a Manchega Sheep with Subclinical Mastitis
Rückert C, Albersmeier A, Winkler A, Tauch A (2015)
Genome announcements 3(3): e00572-15.
PUB | DOI | WoS | PubMed | Europe PMC
Rückert C, Albersmeier A, Winkler A, Tauch A (2015)
Genome announcements 3(3): e00572-15.
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2761035
Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum
Arnold M, Wibberg D, Blom J, Schatschneider S, Winkler A, Kutter Y, Rückert C, Albersmeier A, Albaum S, Goesmann A, Zange S, et al. (2015)
Genome announcements 3(4): e00680-15.
PUB | DOI | WoS | PubMed | Europe PMC
Arnold M, Wibberg D, Blom J, Schatschneider S, Winkler A, Kutter Y, Rückert C, Albersmeier A, Albaum S, Goesmann A, Zange S, et al. (2015)
Genome announcements 3(4): e00680-15.
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2769395
Complete Genome Sequence of the Type Strain Corynebacterium epidermidicanis DSM 45586, Isolated from the Skin of a Dog Suffering from Pruritus
Rückert C, Eimer J, Winkler A, Tauch A (2015)
Genome announcements 3(4): e00959-15.
PUB | DOI | WoS | PubMed | Europe PMC
Rückert C, Eimer J, Winkler A, Tauch A (2015)
Genome announcements 3(4): e00959-15.
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2765190
Virulence Factor Genes Detected in the Complete Genome Sequence of Corynebacterium uterequi DSM 45634, Isolated from the Uterus of a Maiden Mare
Rückert C, Kriete M, Jaenicke S, Winkler A, Tauch A (2015)
Genome announcements 3(4): e00783-15.
PUB | DOI | WoS | PubMed | Europe PMC
Rückert C, Kriete M, Jaenicke S, Winkler A, Tauch A (2015)
Genome announcements 3(4): e00783-15.
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2765197
Complete Genome Sequence of the Type Strain Corynebacterium testudinoris DSM 44614, Recovered from Necrotic Lesions in the Mouth of a Tortoise
Rückert C, Kriete M, Jaenicke S, Winkler A, Tauch A (2015)
Genome announcements 3(4): e00784-15.
PUB | DOI | WoS | PubMed | Europe PMC
Rückert C, Kriete M, Jaenicke S, Winkler A, Tauch A (2015)
Genome announcements 3(4): e00784-15.
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2775257
Complete Genome Sequence of the Type Strain Corynebacterium mustelae DSM 45274, Isolated from Various Tissues of a Male Ferret with Lethal Sepsis
Rückert C, Eimer J, Winkler A, Tauch A (2015)
Genome announcements 3(5): e01012-15.
PUB | DOI | WoS | PubMed | Europe PMC
Rückert C, Eimer J, Winkler A, Tauch A (2015)
Genome announcements 3(5): e01012-15.
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2785064

Complete Genome Sequence of the Clinical Strain Acinetobacter baumannii R2090 Carrying the Chromosomally Encoded Metallo-β-Lactamase GeneblaNDM-1
Krahn T, Wibberg D, Maus I, Winkler A, Nordmann P, Pühler A, Poirel L, Schlüter A (2015)
Genome Announcements 3(5): e01008-15.
PUB
| PDF | DOI | WoS | PubMed | Europe PMC
Krahn T, Wibberg D, Maus I, Winkler A, Nordmann P, Pühler A, Poirel L, Schlüter A (2015)
Genome Announcements 3(5): e01008-15.
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758144
Improved genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 as established by deep mate-pair sequencing on the MiSeq (Illumina) system
Wibberg D, Rupp O, Jelonek L, Kröber M, Verwaaijen B, Blom J, Winkler A, Goesmann A, Grosch R, Pühler A, Schlüter A (2015)
Journal of Biotechnology 203: 19-21.
PUB | DOI | WoS | PubMed | Europe PMC
Wibberg D, Rupp O, Jelonek L, Kröber M, Verwaaijen B, Blom J, Winkler A, Goesmann A, Grosch R, Pühler A, Schlüter A (2015)
Journal of Biotechnology 203: 19-21.
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764512
Complete genome sequence of Rhodococcus erythropolis BG43 (DSM 46869), a degrader of Pseudomonas aeruginosa quorum sensing signal molecules
Rückert C, Birmes FS, Müller C, Niewerth H, Winkler A, Fetzner S, Kalinowski J (2015)
Journal of biotechnology 211: 99-100.
PUB | DOI | WoS | PubMed | Europe PMC
Rückert C, Birmes FS, Müller C, Niewerth H, Winkler A, Fetzner S, Kalinowski J (2015)
Journal of biotechnology 211: 99-100.
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2709783
Complete Genome Sequence of the Actinobacterium Streptomyces glaucescens GLA.O (DSM 40922) consisting of a linear chromosome and one linear plasmid
Ortseifen V, Winkler A, Albersmeier A, Wendler S, Pühler A, Kalinowski J, Rückert C (2015)
Journal of Biotechnology 194: 81-83.
PUB | DOI | WoS | PubMed | Europe PMC
Ortseifen V, Winkler A, Albersmeier A, Wendler S, Pühler A, Kalinowski J, Rückert C (2015)
Journal of Biotechnology 194: 81-83.
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758122
Draft genome of the xanthan producer Xanthomonas campestris NRRL B-1459 (ATCC 13951)
Wibberg D, Alkhateeb R, Winkler A, Albersmeier A, Schatschneider S, Albaum S, Niehaus K, Hublik G, Pühler A, Vorhölter F-J (2015)
Journal of Biotechnology 204: 45-46.
PUB | DOI | WoS | PubMed | Europe PMC
Wibberg D, Alkhateeb R, Winkler A, Albersmeier A, Schatschneider S, Albaum S, Niehaus K, Hublik G, Pühler A, Vorhölter F-J (2015)
Journal of Biotechnology 204: 45-46.
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758134
Complete genome sequence of the strain Defluviitoga tunisiensis L3, isolated from a thermophilic, production-scale biogas plant
Maus I, Cibis KG, Wibberg D, Winkler A, Stolze Y, König H, Pühler A, Schlüter A (2015)
Journal of Biotechnology 203: 17-18.
PUB | DOI | WoS | PubMed | Europe PMC
Maus I, Cibis KG, Wibberg D, Winkler A, Stolze Y, König H, Pühler A, Schlüter A (2015)
Journal of Biotechnology 203: 17-18.
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2719877
Complete genome sequence of Streptomyces lividans TK24
Rückert C, Albersmeier A, Busche T, Jaenicke S, Winkler A, Friðjónsson ÓH, Hreggviðsson GÓ, Lambert C, Badcock D, Bernaerts K, Anne J, et al. (2015)
Journal of Biotechnology 199: 21-22.
PUB | DOI | WoS | PubMed | Europe PMC
Rückert C, Albersmeier A, Busche T, Jaenicke S, Winkler A, Friðjónsson ÓH, Hreggviðsson GÓ, Lambert C, Badcock D, Bernaerts K, Anne J, et al. (2015)
Journal of Biotechnology 199: 21-22.
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901214
Draft genome sequence of Herbinix hemicellulosilytica T3/55(T), a new thermophilic cellulose degrading bacterium isolated from a thermophilic biogas reactor
Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2015)
Journal of Biotechnology 214: 59-60.
PUB | DOI | WoS | PubMed | Europe PMC
Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2015)
Journal of Biotechnology 214: 59-60.
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764185
Draft genome sequence of Talaromyces islandicus ("Penicillium islandicum") WF-38-12, a neglected mold with significant biotechnological potential
Schafhauser T, Wibberg D, Rückert C, Winkler A, Flor L, van Pée K-H, Fewer DP, Sivonen K, Jahn L, Ludwig-Müller J, Caradec T, et al. (2015)
Journal of Biotechnology 211: 101-102.
PUB | DOI | WoS | PubMed | Europe PMC
Schafhauser T, Wibberg D, Rückert C, Winkler A, Flor L, van Pée K-H, Fewer DP, Sivonen K, Jahn L, Ludwig-Müller J, Caradec T, et al. (2015)
Journal of Biotechnology 211: 101-102.
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689746
Complete genome sequence of Bacillus methanolicus MGA3, a thermotolerant amino acid producing methylotroph
Irla M, Neshat A, Winkler A, Albersmeier A, Heggeset TM, Brautaset T, Kalinowski J, Wendisch VF, Rückert C (2014)
Journal of Biotechnology 188: 110-111.
PUB | DOI | WoS | PubMed | Europe PMC
Irla M, Neshat A, Winkler A, Albersmeier A, Heggeset TM, Brautaset T, Kalinowski J, Wendisch VF, Rückert C (2014)
Journal of Biotechnology 188: 110-111.
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717539
Complete genome sequence of the methanogenic neotype strain Methanobacterium formicicum MFT
Maus I, Stantscheff R, Wibberg D, Stolze Y, Winkler A, Pühler A, König H, Schlüter A (2014)
Journal of Biotechnology 192: 40-41.
PUB | DOI | WoS | PubMed | Europe PMC
Maus I, Stantscheff R, Wibberg D, Stolze Y, Winkler A, Pühler A, König H, Schlüter A (2014)
Journal of Biotechnology 192: 40-41.
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2707731
Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant
Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2014)
Journal of Biotechnology 188: 136-137.
PUB | DOI | WoS | PubMed | Europe PMC
Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2014)
Journal of Biotechnology 188: 136-137.
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2633427
Draft Genome Sequence of Sinorhizobium meliloti RU11/001, a model organism for flagellum structure, motility and chemotaxis
Wibberg D, Blom J, Rückert C, Winkler A, Albersmeier A, Pühler A, Schlüter A, Scharf BE (2013)
Journal of Biotechnology 168(4): 731-733.
PUB | DOI | WoS | PubMed | Europe PMC
Wibberg D, Blom J, Rückert C, Winkler A, Albersmeier A, Pühler A, Schlüter A, Scharf BE (2013)
Journal of Biotechnology 168(4): 731-733.