Anika Winkler

awinkler [at] cebitec.uni-bielefeld.de
PEVZ-ID
37406548

52 Publications

Mark all

[52]
2018 | Journal Article | PUB-ID: 2919058
The secreted metabolome of Streptomyces chartreusis and implications for bacterial chemistry
Senges CHR, Al-Dilaimi A, Marchbank DH, Wibberg D, Winkler A, Haltli B, Nowrousian M, Kalinowski J, Kerr RG, Bandow JE (2018)
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 115(10): 2490-2495.
PUB | DOI | WoS | PubMed | Europe PMC
 
[51]
2018 | Journal Article | PUB-ID: 2918969
Complete Genome Sequence of Streptomyces lavendulae subsp. lavendulae CCM 3239 (Formerly “Streptomyces aureofaciens CCM 3239”), a Producer of the Angucycline-Type Antibiotic Auricin
Busche T, Novakova R, Al'Dilaimi A, Homerova D, Feckova L, Rezuchova B, Mingyar E, Csolleiova D, Bekeova C, Winkler A, Sevcikova B, et al. (2018)
Genome Announcements 6(9): e00103-18.
PUB | PDF | DOI
 
[50]
2018 | Journal Article | PUB-ID: 2918672
Differential transcriptomic analysis reveals hidden light response in Streptomyces lividans
Koepff J, Morschett H, Busche T, Winkler A, Kalinowski J, Wiechert W, Oldiges M (2018)
BIOTECHNOLOGY PROGRESS 34(1): 287-292.
PUB | DOI | WoS | PubMed | Europe PMC
 
[49]
2018 | Journal Article | PUB-ID: 2917037
Assembly of the Lactuca sativa, L. cv. Tizian draft genome sequence reveals differences within major resistance complex 1 as compared to the cv. Salinas reference genome
Verwaaijen B, Wibberg D, Nelkner J, Gordin M, Rupp O, Winkler A, Bremges A, Blom J, Grosch R, Pühler A, Schlüter A (2018)
JOURNAL OF BIOTECHNOLOGY 267: 12-18.
PUB | DOI | WoS | PubMed | Europe PMC
 
[48]
2017 | Journal Article | PUB-ID: 2916925
Individual- and Species-Specific Skin Microbiomes in Three Different Estrildid Finch Species Revealed by 16S Amplicon Sequencing
Engel K, Sauer J, Jünemann S, Winkler A, Wibberg D, Kalinowski J, Tauch A, Caspers B (2017)
Microbial Ecology.
PUB | DOI | PubMed | Europe PMC
 
[47]
2017 | Journal Article | PUB-ID: 2914537
Isolation and whole genome analysis of endospore-forming bacteria from heroin.
Kalinowski J, Ahrens B, Al-Dilaimi A, Winkler A, Wibberg D, Schleenbecker U, Rückert C, Wölfel R, Grass G (2017)
Forensic Sci Int Genet 32: 1-6.
PUB | DOI | WoS | PubMed | Europe PMC
 
[46]
2017 | Journal Article | PUB-ID: 2910668
A Mitochondrial Autonomously Replicating Sequence from Pichia pastoris for Uniform High Level Recombinant Protein Production
Friehs K, Schwarzhans JP, Luttermann T, Wibberg D, Winkler A, Hübner W, Huser T, Kalinowski J (2017)
Frontiers in Microbiology 8: 780.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[45]
2017 | Journal Article | PUB-ID: 2912114
The Rhizoctonia solani AG1-IB (isolate 7/3/14) transcriptome during interaction with the host plant lettuce (Lactuca sativa L.)
Verwaaijen B, Wibberg D, Kröber M, Winkler A, Zrenner R, Bednarz H, Niehaus K, Grosch R, Pühler A, Schlüter A (2017)
PLOS ONE 12(5): e0177278.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[44]
2017 | Journal Article | PUB-ID: 2908419
Genome Sequence of the Symbiotic Type Strain Rhizobium tibeticum CCBAU85039T
Torres Tejerizo GA, Wibberg D, Winkler A, Ormeño-Orrillo E, Martínez-Romero E, Niehaus K, Pühler A, Kalinowski J, Lagares A, Schlüter A, Pistorio M (2017)
Genome Announcements 5(4): e01513-16.
PUB | PDF | DOI
 
[43]
2017 | Journal Article | PUB-ID: 2913038
Highly efficient methane generation from untreated microalgae biomass
Klassen V, Blifernez-Klassen O, Wibberg D, Winkler A, Kalinowski J, Posten C, Kruse O (2017)
Biotechnology for Biofuels 10(1): 186.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[42]
2017 | Journal Article | PUB-ID: 2913386
Time-resolved transcriptome analysis and lipid pathway reconstruction of the oleaginous green microalga Monoraphidium neglectum reveal a model for triacylglycerol and lipid hyperaccumulation
Jaeger D, Winkler A, Mussgnug JH, Kalinowski J, Goesmann A, Kruse O (2017)
Biotechnology for Biofuels 10: 197.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[41]
2017 | Journal Article | PUB-ID: 2913403
Linking secondary metabolites to biosynthesis genes in the fungal endophyte Cyanodermella asteris: The anti-cancer bisanthraquinone skyrin.
Jahn L, Schafhauser T, Wibberg D, Rückert C, Winkler A, Kulik A, Weber T, Flor L, van Pée K-H, Kalinowski J, Ludwig-Müller J, et al. (2017)
Journal of Biotechnology 257: 233-239.
PUB | DOI | WoS | PubMed | Europe PMC
 
[40]
2017 | Journal Article | PUB-ID: 2911777
Genome sequence of Methanobacterium congolense strain Buetzberg, a hydrogenotrophic, methanogenic archaeon, isolated from a mesophilic industrial-scale biogas plant utilizing bio-waste
Torres Tejerizo GA, Kim YS, Maus I, Wibberg D, Winkler A, Off S, Pühler A, Scherer P, Schlüter A (2017)
JOURNAL OF BIOTECHNOLOGY 247: 1-5.
PUB | DOI | WoS | PubMed | Europe PMC
 
[39]
2017 | Journal Article | PUB-ID: 2910373
Identification of a novel mycovirus isolated from Rhizoctonia solani (AG 2-2 IV) provides further information about genome plasticity within the order Tymovirales
Bartholomaus A, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M (2017)
ARCHIVES OF VIROLOGY 162(2): 555-559.
PUB | DOI | WoS | PubMed | Europe PMC
 
[38]
2016 | Journal Article | PUB-ID: 2904976
Complete Chloroplast and Mitochondrial Genome Sequences of the Hydrocarbon Oil-Producing Green MicroalgaBotryococcus brauniiRace B (Showa)
Blifernez-Klassen O, Wibberg D, Winkler A, Blom J, Goesmann A, Kalinowski J, Kruse O (2016)
Genome Announcements 4(3): e00524-16.
PUB | PDF | DOI
 
[37]
2016 | Journal Article | PUB-ID: 2907685
Complete genome sequence of the actinomycete Actinoalloteichus hymeniacidonis type strain HPA 177T isolated from a marine sponge
Schaffert L, Albersmeier A, Winkler A, Kalinowski J, Zotchev SB, Rückert C (2016)
Standards in Genomic Sciences 11: 91.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[36]
2016 | Journal Article | PUB-ID: 2907679
Non-canonical integration events in Pichia pastoris encountered during standard transformation analysed with genome sequencing
Schwarzhans JP, Wibberg D, Winkler A, Luttermann T, Kalinowski J, Friehs K (2016)
Scientific Reports 6: 38952.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[35]
2016 | Journal Article | PUB-ID: 2907676
Complete Genome Sequence of the Barley Pathogen Xanthomonas translucens pv. translucens DSM 18974 T (ATCC 19319 T)
Jaenicke S, Bunk B, Wibberg D, Spröer C, Hersemann L, Blom J, Winkler A, Schatschneider S, Albaum S, Kölliker R, Goesmann A, et al. (2016)
Genome Announcements 4(6): e01334-16.
PUB | PDF | DOI
 
[34]
2016 | Journal Article | PUB-ID: 2907431
Deep Sequencing Analysis Reveals the Mycoviral Diversity of the Virome of an Avirulent Isolate of Rhizoctonia solani AG-2-2 IV
Bartholomaeus A, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M (2016)
PLOS ONE 11(11): e0165965.
PUB | DOI | WoS | PubMed | Europe PMC
 
[33]
2016 | Journal Article | PUB-ID: 2904704
Complete mitochondrial genome of the scleractinian coral Porites rus
Celis JS, Wibberg D, Winkler A, Wilke T, Kalinowski J (2016)
Mitochondrial DNA 27(5): 3695-3696.
PUB | DOI | WoS | PubMed | Europe PMC
 
[32]
2016 | Journal Article | PUB-ID: 2902126
Taxonomic analysis of the microbial community in stored sugar beets using high-throughput sequencing of different marker genes
Liebe S, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M (2016)
FEMS Microbiology Ecology 92(2): fiw004.
PUB | DOI | WoS
 
[31]
2016 | Journal Article | PUB-ID: 2905504
Comparative transcriptome analysis of the biocontrol strain Bacillus amyloliquefaciens FZB42 as response to biofilm formation analyzed by RNA sequencing
Kröber M, Verwaaijen B, Wibberg D, Winkler A, Pühler A, Schlüter A (2016)
Journal of Biotechnology 231: 212-223.
PUB | DOI | WoS | PubMed | Europe PMC
 
[30]
2016 | Journal Article | PUB-ID: 2903655
Integration event induced changes in recombinant protein productivity in Pichia pastoris discovered by whole genome sequencing and derived vector optimization
Schwarzhans JP, Wibberg D, Winkler A, Luttermann T, Kalinowski J, Friehs K (2016)
Microbial Cell Factories 15: 84.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[29]
2016 | Journal Article | PUB-ID: 2901675
Intraspecies transfer of the chromosomally encoded Acinetobacter baumannii blaNDM-1 carbapenemase gene.
Krahn T, Wibberg D, Maus I, Winkler A, Bontron S, Sczyrba A, Nordmann P, Pühler A, Poirel L, Schlüter A (2016)
Antimicrobial Agents and Chemotherapy 60(5): 3032-3040.
PUB | DOI | WoS | PubMed | Europe PMC
 
[28]
2016 | Journal Article | PUB-ID: 2904993
Complete Genome Sequence of Herbinix luporumSD1D, a New Cellulose-Degrading Bacterium Isolated from a Thermophilic Biogas Reactor
Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2016)
Genome Announcements 4(4): e00687-16.
PUB | PDF | DOI
 
[27]
2016 | Journal Article | PUB-ID: 2904978
Draft Genome Sequence of Propionisporasp. Strain 2/2-37, a New Xylan-Degrading Bacterium Isolated from a Mesophilic Biogas Reactor
Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2016)
Genome Announcements 4(3): e00609-16.
PUB | PDF | DOI
 
[26]
2016 | Journal Article | PUB-ID: 2904970
Complete Genome Sequence of the MethanogenMethanoculleus bourgensisBA1 Isolated from a Biogas Reactor
Maus I, Wibberg D, Winkler A, Pühler A, Schnürer A, Schlüter A (2016)
Genome Announcements 4(3): e00568-16.
PUB | PDF | DOI
 
[25]
2016 | Journal Article | PUB-ID: 2906715
Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant (vol 188, pg 136, 2014)
Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2016)
Journal of Biotechnology 237: 35.
PUB | DOI | WoS | PubMed | Europe PMC
 
[24]
2016 | Journal Article | PUB-ID: 2905634
Deciphering the Transcriptional Response Mediated by the Redox-Sensing System HbpS-SenS-SenR from Streptomycetes
Busche T, Winkler A, Wedderhoff I, Rückert C, Kalinowski J, Lucana DO de O (2016)
PLOS ONE 11(8): e0159873.
PUB | DOI | WoS | PubMed | Europe PMC
 
[23]
2016 | Journal Article | PUB-ID: 2901383
Isolation and genome sequencing of four Arctic marine Psychrobacter strains exhibiting multicopper oxidase activity.
Moghadam MS, Albersmeier A, Winkler A, Cimmino L, Rise K, Hohmann-Marriott MF, Kalinowski J, Rückert C, Wentzel A, Lale R (2016)
BMC Genomics 17(1): 117.
PUB | DOI | WoS | PubMed | Europe PMC
 
[22]
2015 | Journal Article | PUB-ID: 2911748
Complete Genome Sequence ofAcinetobacter baumanniiCIP 70.10, a Susceptible Reference Strain for Comparative Genome Analyses
Krahn T, Wibberg D, Maus I, Winkler A, Pühler A, Poirel L, Schlüter A (2015)
Genome Announcements 3(4): e00850-15.
PUB | DOI
 
[21]
2015 | Journal Article | PUB-ID: 2764906
Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant
Bremges A, Maus I, Belmann P, Eikmeyer FG, Winkler A, Albersmeier A, Pühler A, Schlüter A, Sczyrba A (2015)
GigaScience 4: 33.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[20]
2015 | Journal Article | PUB-ID: 2764185
Draft genome sequence of Talaromyces islandicus ("Penicillium islandicum") WF-38-12, a neglected mold with significant biotechnological potential
Schafhauser T, Wibberg D, Rückert C, Winkler A, Flor L, van Pée K-H, Fewer DP, Sivonen K, Jahn L, Ludwig-Müller J, Caradec T, et al. (2015)
Journal of Biotechnology 211: 101-102.
PUB | DOI | WoS | PubMed | Europe PMC
 
[19]
2015 | Journal Article | PUB-ID: 2761035
Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum
Arnold M, Wibberg D, Blom J, Schatschneider S, Winkler A, Kutter Y, Rückert C, Albersmeier A, Albaum S, Goesmann A, Zange S, et al. (2015)
Genome announcements 3(4).
PUB | DOI | PubMed | Europe PMC
 
[18]
2015 | Journal Article | PUB-ID: 2758122
Draft genome of the xanthan producer Xanthomonas campestris NRRL B-1459 (ATCC 13951)
Wibberg D, Alkhateeb R, Winkler A, Albersmeier A, Schatschneider S, Albaum S, Niehaus K, Hublik G, Pühler A, Vorhölter F-J (2015)
Journal of Biotechnology 204: 45-46.
PUB | DOI | WoS | PubMed | Europe PMC
 
[17]
2015 | Journal Article | PUB-ID: 2709783
Complete Genome Sequence of the Actinobacterium Streptomyces glaucescens GLA.O (DSM 40922) consisting of a linear chromosome and one linear plasmid
Ortseifen V, Winkler A, Albersmeier A, Wendler S, Pühler A, Kalinowski J, Rückert C (2015)
Journal of Biotechnology 194: 81-83.
PUB | DOI | WoS | PubMed | Europe PMC
 
[16]
2015 | Journal Article | PUB-ID: 2901214
Draft genome sequence of Herbinix hemicellulosilytica T3/55(T), a new thermophilic cellulose degrading bacterium isolated from a thermophilic biogas reactor
Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2015)
Journal of Biotechnology 214: 59-60.
PUB | DOI | WoS | PubMed | Europe PMC
 
[15]
2015 | Journal Article | PUB-ID: 2758134
Complete genome sequence of the strain Defluviitoga tunisiensis L3, isolated from a thermophilic, production-scale biogas plant
Maus I, Cibis KG, Wibberg D, Winkler A, Stolze Y, König H, Pühler A, Schlüter A (2015)
Journal of Biotechnology 203: 17-18.
PUB | DOI | WoS | PubMed | Europe PMC
 
[14]
2015 | Journal Article | PUB-ID: 2785064
Complete Genome Sequence of the Clinical Strain Acinetobacter baumannii R2090 Carrying the Chromosomally Encoded Metallo-β-Lactamase GeneblaNDM-1
Krahn T, Wibberg D, Maus I, Winkler A, Nordmann P, Pühler A, Poirel L, Schlüter A (2015)
Genome Announcements 3(5): e01008-15.
PUB | PDF | DOI
 
[13]
2015 | Journal Article | PUB-ID: 2758144
Improved genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 as established by deep mate-pair sequencing on the MiSeq (Illumina) system
Wibberg D, Rupp O, Jelonek L, Kröber M, Verwaaijen B, Blom J, Winkler A, Goesmann A, Grosch R, Pühler A, Schlüter A (2015)
Journal of Biotechnology 203: 19-21.
PUB | DOI | WoS | PubMed | Europe PMC
 
[12]
2015 | Journal Article | PUB-ID: 2719877
Complete genome sequence of Streptomyces lividans TK24
Rückert C, Albersmeier A, Busche T, Jaenicke S, Winkler A, Friðjónsson ÓH, Hreggviðsson GÓ, Lambert C, Badcock D, Bernaerts K, Anne J, et al. (2015)
Journal of Biotechnology 199: 21-22.
PUB | DOI | WoS | PubMed | Europe PMC
 
[11]
2015 | Journal Article | PUB-ID: 2764512
Complete genome sequence of Rhodococcus erythropolis BG43 (DSM 46869), a degrader of Pseudomonas aeruginosa quorum sensing signal molecules
Rückert C, Birmes FS, Müller C, Niewerth H, Winkler A, Fetzner S, Kalinowski J (2015)
Journal of biotechnology 211: 99-100.
PUB | DOI | WoS | PubMed | Europe PMC
 
[10]
2015 | Journal Article | PUB-ID: 2765197
Complete Genome Sequence of the Type Strain Corynebacterium testudinoris DSM 44614, Recovered from Necrotic Lesions in the Mouth of a Tortoise
Rückert C, Kriete M, Jaenicke S, Winkler A, Tauch A (2015)
Genome announcements 3(4).
PUB | DOI | PubMed | Europe PMC
 
[9]
2015 | Journal Article | PUB-ID: 2765190
Virulence Factor Genes Detected in the Complete Genome Sequence of Corynebacterium uterequi DSM 45634, Isolated from the Uterus of a Maiden Mare
Rückert C, Kriete M, Jaenicke S, Winkler A, Tauch A (2015)
Genome announcements 3(4).
PUB | DOI | PubMed | Europe PMC
 
[8]
2015 | Journal Article | PUB-ID: 2775257
Complete Genome Sequence of the Type Strain Corynebacterium mustelae DSM 45274, Isolated from Various Tissues of a Male Ferret with Lethal Sepsis
Rückert C, Eimer J, Winkler A, Tauch A (2015)
Genome announcements 3(5).
PUB | DOI | PubMed | Europe PMC
 
[7]
2015 | Journal Article | PUB-ID: 2753057
Complete Genome Sequence of Corynebacterium camporealensis DSM 44610, Isolated from the Milk of a Manchega Sheep with Subclinical Mastitis
Rückert C, Albersmeier A, Winkler A, Tauch A (2015)
Genome announcements 3(3).
PUB | DOI | PubMed | Europe PMC
 
[6]
2015 | Journal Article | PUB-ID: 2769395
Complete Genome Sequence of the Type Strain Corynebacterium epidermidicanis DSM 45586, Isolated from the Skin of a Dog Suffering from Pruritus
Rückert C, Eimer J, Winkler A, Tauch A (2015)
Genome announcements 3(4).
PUB | DOI | PubMed | Europe PMC
 
[5]
2015 | Journal Article | PUB-ID: 2753051
Complete Genome Sequence of Corynebacterium kutscheri DSM 20755, a Corynebacterial Type Strain with Remarkably Low G+C Content of Chromosomal DNA
Rückert C, Albersmeier A, Winkler A, Tauch A (2015)
Genome announcements 3(3).
PUB | DOI | PubMed | Europe PMC
 
[4]
2014 | Journal Article | PUB-ID: 2707731
Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant
Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2014)
Journal of Biotechnology 188: 136-137.
PUB | DOI | WoS | PubMed | Europe PMC
 
[3]
2014 | Journal Article | PUB-ID: 2717539
Complete genome sequence of the methanogenic neotype strain Methanobacterium formicicum MFT
Maus I, Stantscheff R, Wibberg D, Stolze Y, Winkler A, Pühler A, König H, Schlüter A (2014)
Journal of Biotechnology 192: 40-41.
PUB | DOI | WoS | PubMed | Europe PMC
 
[2]
2014 | Journal Article | PUB-ID: 2689746
Complete genome sequence of *Bacillus methanolicus* MGA3, a thermotolerant amino acid producing methylotroph
Irla M, Neshat A, Winkler A, Albersmeier A, Heggeset TM, Brautaset T, Kalinowski J, Wendisch VF, Rückert C (2014)
Journal of Biotechnology 188: 110-111.
PUB | DOI | WoS | PubMed | Europe PMC
 
[1]
2013 | Journal Article | PUB-ID: 2633427
Draft Genome Sequence of Sinorhizobium meliloti RU11/001, a model organism for flagellum structure, motility and chemotaxis
Wibberg D, Blom J, Rückert C, Winkler A, Albersmeier A, Pühler A, Schlüter A, Scharf BE (2013)
Journal of Biotechnology 168(4): 731-733.
PUB | DOI | WoS | PubMed | Europe PMC
 
0Marked Publication(s)

Search

Filter Publications

Display / Sort

Export / Embed

52 Data Publications

Mark all

[52]
2018 | Journal Article | PUB-ID: 2919058
The secreted metabolome of Streptomyces chartreusis and implications for bacterial chemistry
Senges CHR, Al-Dilaimi A, Marchbank DH, Wibberg D, Winkler A, Haltli B, Nowrousian M, Kalinowski J, Kerr RG, Bandow JE (2018)
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 115(10): 2490-2495.
PUB | DOI | WoS | PubMed | Europe PMC
 
[51]
2018 | Journal Article | PUB-ID: 2918969
Complete Genome Sequence of Streptomyces lavendulae subsp. lavendulae CCM 3239 (Formerly “Streptomyces aureofaciens CCM 3239”), a Producer of the Angucycline-Type Antibiotic Auricin
Busche T, Novakova R, Al'Dilaimi A, Homerova D, Feckova L, Rezuchova B, Mingyar E, Csolleiova D, Bekeova C, Winkler A, Sevcikova B, et al. (2018)
Genome Announcements 6(9): e00103-18.
PUB | PDF | DOI
 
[50]
2018 | Journal Article | PUB-ID: 2918672
Differential transcriptomic analysis reveals hidden light response in Streptomyces lividans
Koepff J, Morschett H, Busche T, Winkler A, Kalinowski J, Wiechert W, Oldiges M (2018)
BIOTECHNOLOGY PROGRESS 34(1): 287-292.
PUB | DOI | WoS | PubMed | Europe PMC
 
[49]
2018 | Journal Article | PUB-ID: 2917037
Assembly of the Lactuca sativa, L. cv. Tizian draft genome sequence reveals differences within major resistance complex 1 as compared to the cv. Salinas reference genome
Verwaaijen B, Wibberg D, Nelkner J, Gordin M, Rupp O, Winkler A, Bremges A, Blom J, Grosch R, Pühler A, Schlüter A (2018)
JOURNAL OF BIOTECHNOLOGY 267: 12-18.
PUB | DOI | WoS | PubMed | Europe PMC
 
[48]
2017 | Journal Article | PUB-ID: 2916925
Individual- and Species-Specific Skin Microbiomes in Three Different Estrildid Finch Species Revealed by 16S Amplicon Sequencing
Engel K, Sauer J, Jünemann S, Winkler A, Wibberg D, Kalinowski J, Tauch A, Caspers B (2017)
Microbial Ecology.
PUB | DOI | PubMed | Europe PMC
 
[47]
2017 | Journal Article | PUB-ID: 2914537
Isolation and whole genome analysis of endospore-forming bacteria from heroin.
Kalinowski J, Ahrens B, Al-Dilaimi A, Winkler A, Wibberg D, Schleenbecker U, Rückert C, Wölfel R, Grass G (2017)
Forensic Sci Int Genet 32: 1-6.
PUB | DOI | WoS | PubMed | Europe PMC
 
[46]
2017 | Journal Article | PUB-ID: 2910668
A Mitochondrial Autonomously Replicating Sequence from Pichia pastoris for Uniform High Level Recombinant Protein Production
Friehs K, Schwarzhans JP, Luttermann T, Wibberg D, Winkler A, Hübner W, Huser T, Kalinowski J (2017)
Frontiers in Microbiology 8: 780.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[45]
2017 | Journal Article | PUB-ID: 2912114
The Rhizoctonia solani AG1-IB (isolate 7/3/14) transcriptome during interaction with the host plant lettuce (Lactuca sativa L.)
Verwaaijen B, Wibberg D, Kröber M, Winkler A, Zrenner R, Bednarz H, Niehaus K, Grosch R, Pühler A, Schlüter A (2017)
PLOS ONE 12(5): e0177278.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[44]
2017 | Journal Article | PUB-ID: 2908419
Genome Sequence of the Symbiotic Type Strain Rhizobium tibeticum CCBAU85039T
Torres Tejerizo GA, Wibberg D, Winkler A, Ormeño-Orrillo E, Martínez-Romero E, Niehaus K, Pühler A, Kalinowski J, Lagares A, Schlüter A, Pistorio M (2017)
Genome Announcements 5(4): e01513-16.
PUB | PDF | DOI
 
[43]
2017 | Journal Article | PUB-ID: 2913038
Highly efficient methane generation from untreated microalgae biomass
Klassen V, Blifernez-Klassen O, Wibberg D, Winkler A, Kalinowski J, Posten C, Kruse O (2017)
Biotechnology for Biofuels 10(1): 186.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[42]
2017 | Journal Article | PUB-ID: 2913386
Time-resolved transcriptome analysis and lipid pathway reconstruction of the oleaginous green microalga Monoraphidium neglectum reveal a model for triacylglycerol and lipid hyperaccumulation
Jaeger D, Winkler A, Mussgnug JH, Kalinowski J, Goesmann A, Kruse O (2017)
Biotechnology for Biofuels 10: 197.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[41]
2017 | Journal Article | PUB-ID: 2913403
Linking secondary metabolites to biosynthesis genes in the fungal endophyte Cyanodermella asteris: The anti-cancer bisanthraquinone skyrin.
Jahn L, Schafhauser T, Wibberg D, Rückert C, Winkler A, Kulik A, Weber T, Flor L, van Pée K-H, Kalinowski J, Ludwig-Müller J, et al. (2017)
Journal of Biotechnology 257: 233-239.
PUB | DOI | WoS | PubMed | Europe PMC
 
[40]
2017 | Journal Article | PUB-ID: 2911777
Genome sequence of Methanobacterium congolense strain Buetzberg, a hydrogenotrophic, methanogenic archaeon, isolated from a mesophilic industrial-scale biogas plant utilizing bio-waste
Torres Tejerizo GA, Kim YS, Maus I, Wibberg D, Winkler A, Off S, Pühler A, Scherer P, Schlüter A (2017)
JOURNAL OF BIOTECHNOLOGY 247: 1-5.
PUB | DOI | WoS | PubMed | Europe PMC
 
[39]
2017 | Journal Article | PUB-ID: 2910373
Identification of a novel mycovirus isolated from Rhizoctonia solani (AG 2-2 IV) provides further information about genome plasticity within the order Tymovirales
Bartholomaus A, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M (2017)
ARCHIVES OF VIROLOGY 162(2): 555-559.
PUB | DOI | WoS | PubMed | Europe PMC
 
[38]
2016 | Journal Article | PUB-ID: 2904976
Complete Chloroplast and Mitochondrial Genome Sequences of the Hydrocarbon Oil-Producing Green MicroalgaBotryococcus brauniiRace B (Showa)
Blifernez-Klassen O, Wibberg D, Winkler A, Blom J, Goesmann A, Kalinowski J, Kruse O (2016)
Genome Announcements 4(3): e00524-16.
PUB | PDF | DOI
 
[37]
2016 | Journal Article | PUB-ID: 2907685
Complete genome sequence of the actinomycete Actinoalloteichus hymeniacidonis type strain HPA 177T isolated from a marine sponge
Schaffert L, Albersmeier A, Winkler A, Kalinowski J, Zotchev SB, Rückert C (2016)
Standards in Genomic Sciences 11: 91.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[36]
2016 | Journal Article | PUB-ID: 2907679
Non-canonical integration events in Pichia pastoris encountered during standard transformation analysed with genome sequencing
Schwarzhans JP, Wibberg D, Winkler A, Luttermann T, Kalinowski J, Friehs K (2016)
Scientific Reports 6: 38952.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[35]
2016 | Journal Article | PUB-ID: 2907676
Complete Genome Sequence of the Barley Pathogen Xanthomonas translucens pv. translucens DSM 18974 T (ATCC 19319 T)
Jaenicke S, Bunk B, Wibberg D, Spröer C, Hersemann L, Blom J, Winkler A, Schatschneider S, Albaum S, Kölliker R, Goesmann A, et al. (2016)
Genome Announcements 4(6): e01334-16.
PUB | PDF | DOI
 
[34]
2016 | Journal Article | PUB-ID: 2907431
Deep Sequencing Analysis Reveals the Mycoviral Diversity of the Virome of an Avirulent Isolate of Rhizoctonia solani AG-2-2 IV
Bartholomaeus A, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M (2016)
PLOS ONE 11(11): e0165965.
PUB | DOI | WoS | PubMed | Europe PMC
 
[33]
2016 | Journal Article | PUB-ID: 2904704
Complete mitochondrial genome of the scleractinian coral Porites rus
Celis JS, Wibberg D, Winkler A, Wilke T, Kalinowski J (2016)
Mitochondrial DNA 27(5): 3695-3696.
PUB | DOI | WoS | PubMed | Europe PMC
 
[32]
2016 | Journal Article | PUB-ID: 2902126
Taxonomic analysis of the microbial community in stored sugar beets using high-throughput sequencing of different marker genes
Liebe S, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M (2016)
FEMS Microbiology Ecology 92(2): fiw004.
PUB | DOI | WoS
 
[31]
2016 | Journal Article | PUB-ID: 2905504
Comparative transcriptome analysis of the biocontrol strain Bacillus amyloliquefaciens FZB42 as response to biofilm formation analyzed by RNA sequencing
Kröber M, Verwaaijen B, Wibberg D, Winkler A, Pühler A, Schlüter A (2016)
Journal of Biotechnology 231: 212-223.
PUB | DOI | WoS | PubMed | Europe PMC
 
[30]
2016 | Journal Article | PUB-ID: 2903655
Integration event induced changes in recombinant protein productivity in Pichia pastoris discovered by whole genome sequencing and derived vector optimization
Schwarzhans JP, Wibberg D, Winkler A, Luttermann T, Kalinowski J, Friehs K (2016)
Microbial Cell Factories 15: 84.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[29]
2016 | Journal Article | PUB-ID: 2901675
Intraspecies transfer of the chromosomally encoded Acinetobacter baumannii blaNDM-1 carbapenemase gene.
Krahn T, Wibberg D, Maus I, Winkler A, Bontron S, Sczyrba A, Nordmann P, Pühler A, Poirel L, Schlüter A (2016)
Antimicrobial Agents and Chemotherapy 60(5): 3032-3040.
PUB | DOI | WoS | PubMed | Europe PMC
 
[28]
2016 | Journal Article | PUB-ID: 2904993
Complete Genome Sequence of Herbinix luporumSD1D, a New Cellulose-Degrading Bacterium Isolated from a Thermophilic Biogas Reactor
Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2016)
Genome Announcements 4(4): e00687-16.
PUB | PDF | DOI
 
[27]
2016 | Journal Article | PUB-ID: 2904978
Draft Genome Sequence of Propionisporasp. Strain 2/2-37, a New Xylan-Degrading Bacterium Isolated from a Mesophilic Biogas Reactor
Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2016)
Genome Announcements 4(3): e00609-16.
PUB | PDF | DOI
 
[26]
2016 | Journal Article | PUB-ID: 2904970
Complete Genome Sequence of the MethanogenMethanoculleus bourgensisBA1 Isolated from a Biogas Reactor
Maus I, Wibberg D, Winkler A, Pühler A, Schnürer A, Schlüter A (2016)
Genome Announcements 4(3): e00568-16.
PUB | PDF | DOI
 
[25]
2016 | Journal Article | PUB-ID: 2906715
Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant (vol 188, pg 136, 2014)
Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2016)
Journal of Biotechnology 237: 35.
PUB | DOI | WoS | PubMed | Europe PMC
 
[24]
2016 | Journal Article | PUB-ID: 2905634
Deciphering the Transcriptional Response Mediated by the Redox-Sensing System HbpS-SenS-SenR from Streptomycetes
Busche T, Winkler A, Wedderhoff I, Rückert C, Kalinowski J, Lucana DO de O (2016)
PLOS ONE 11(8): e0159873.
PUB | DOI | WoS | PubMed | Europe PMC
 
[23]
2016 | Journal Article | PUB-ID: 2901383
Isolation and genome sequencing of four Arctic marine Psychrobacter strains exhibiting multicopper oxidase activity.
Moghadam MS, Albersmeier A, Winkler A, Cimmino L, Rise K, Hohmann-Marriott MF, Kalinowski J, Rückert C, Wentzel A, Lale R (2016)
BMC Genomics 17(1): 117.
PUB | DOI | WoS | PubMed | Europe PMC
 
[22]
2015 | Journal Article | PUB-ID: 2911748
Complete Genome Sequence ofAcinetobacter baumanniiCIP 70.10, a Susceptible Reference Strain for Comparative Genome Analyses
Krahn T, Wibberg D, Maus I, Winkler A, Pühler A, Poirel L, Schlüter A (2015)
Genome Announcements 3(4): e00850-15.
PUB | DOI
 
[21]
2015 | Journal Article | PUB-ID: 2764906
Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant
Bremges A, Maus I, Belmann P, Eikmeyer FG, Winkler A, Albersmeier A, Pühler A, Schlüter A, Sczyrba A (2015)
GigaScience 4: 33.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[20]
2015 | Journal Article | PUB-ID: 2764185
Draft genome sequence of Talaromyces islandicus ("Penicillium islandicum") WF-38-12, a neglected mold with significant biotechnological potential
Schafhauser T, Wibberg D, Rückert C, Winkler A, Flor L, van Pée K-H, Fewer DP, Sivonen K, Jahn L, Ludwig-Müller J, Caradec T, et al. (2015)
Journal of Biotechnology 211: 101-102.
PUB | DOI | WoS | PubMed | Europe PMC
 
[19]
2015 | Journal Article | PUB-ID: 2761035
Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum
Arnold M, Wibberg D, Blom J, Schatschneider S, Winkler A, Kutter Y, Rückert C, Albersmeier A, Albaum S, Goesmann A, Zange S, et al. (2015)
Genome announcements 3(4).
PUB | DOI | PubMed | Europe PMC
 
[18]
2015 | Journal Article | PUB-ID: 2758122
Draft genome of the xanthan producer Xanthomonas campestris NRRL B-1459 (ATCC 13951)
Wibberg D, Alkhateeb R, Winkler A, Albersmeier A, Schatschneider S, Albaum S, Niehaus K, Hublik G, Pühler A, Vorhölter F-J (2015)
Journal of Biotechnology 204: 45-46.
PUB | DOI | WoS | PubMed | Europe PMC
 
[17]
2015 | Journal Article | PUB-ID: 2709783
Complete Genome Sequence of the Actinobacterium Streptomyces glaucescens GLA.O (DSM 40922) consisting of a linear chromosome and one linear plasmid
Ortseifen V, Winkler A, Albersmeier A, Wendler S, Pühler A, Kalinowski J, Rückert C (2015)
Journal of Biotechnology 194: 81-83.
PUB | DOI | WoS | PubMed | Europe PMC
 
[16]
2015 | Journal Article | PUB-ID: 2901214
Draft genome sequence of Herbinix hemicellulosilytica T3/55(T), a new thermophilic cellulose degrading bacterium isolated from a thermophilic biogas reactor
Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2015)
Journal of Biotechnology 214: 59-60.
PUB | DOI | WoS | PubMed | Europe PMC
 
[15]
2015 | Journal Article | PUB-ID: 2758134
Complete genome sequence of the strain Defluviitoga tunisiensis L3, isolated from a thermophilic, production-scale biogas plant
Maus I, Cibis KG, Wibberg D, Winkler A, Stolze Y, König H, Pühler A, Schlüter A (2015)
Journal of Biotechnology 203: 17-18.
PUB | DOI | WoS | PubMed | Europe PMC
 
[14]
2015 | Journal Article | PUB-ID: 2785064
Complete Genome Sequence of the Clinical Strain Acinetobacter baumannii R2090 Carrying the Chromosomally Encoded Metallo-β-Lactamase GeneblaNDM-1
Krahn T, Wibberg D, Maus I, Winkler A, Nordmann P, Pühler A, Poirel L, Schlüter A (2015)
Genome Announcements 3(5): e01008-15.
PUB | PDF | DOI
 
[13]
2015 | Journal Article | PUB-ID: 2758144
Improved genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 as established by deep mate-pair sequencing on the MiSeq (Illumina) system
Wibberg D, Rupp O, Jelonek L, Kröber M, Verwaaijen B, Blom J, Winkler A, Goesmann A, Grosch R, Pühler A, Schlüter A (2015)
Journal of Biotechnology 203: 19-21.
PUB | DOI | WoS | PubMed | Europe PMC
 
[12]
2015 | Journal Article | PUB-ID: 2719877
Complete genome sequence of Streptomyces lividans TK24
Rückert C, Albersmeier A, Busche T, Jaenicke S, Winkler A, Friðjónsson ÓH, Hreggviðsson GÓ, Lambert C, Badcock D, Bernaerts K, Anne J, et al. (2015)
Journal of Biotechnology 199: 21-22.
PUB | DOI | WoS | PubMed | Europe PMC
 
[11]
2015 | Journal Article | PUB-ID: 2764512
Complete genome sequence of Rhodococcus erythropolis BG43 (DSM 46869), a degrader of Pseudomonas aeruginosa quorum sensing signal molecules
Rückert C, Birmes FS, Müller C, Niewerth H, Winkler A, Fetzner S, Kalinowski J (2015)
Journal of biotechnology 211: 99-100.
PUB | DOI | WoS | PubMed | Europe PMC
 
[10]
2015 | Journal Article | PUB-ID: 2765197
Complete Genome Sequence of the Type Strain Corynebacterium testudinoris DSM 44614, Recovered from Necrotic Lesions in the Mouth of a Tortoise
Rückert C, Kriete M, Jaenicke S, Winkler A, Tauch A (2015)
Genome announcements 3(4).
PUB | DOI | PubMed | Europe PMC
 
[9]
2015 | Journal Article | PUB-ID: 2765190
Virulence Factor Genes Detected in the Complete Genome Sequence of Corynebacterium uterequi DSM 45634, Isolated from the Uterus of a Maiden Mare
Rückert C, Kriete M, Jaenicke S, Winkler A, Tauch A (2015)
Genome announcements 3(4).
PUB | DOI | PubMed | Europe PMC
 
[8]
2015 | Journal Article | PUB-ID: 2775257
Complete Genome Sequence of the Type Strain Corynebacterium mustelae DSM 45274, Isolated from Various Tissues of a Male Ferret with Lethal Sepsis
Rückert C, Eimer J, Winkler A, Tauch A (2015)
Genome announcements 3(5).
PUB | DOI | PubMed | Europe PMC
 
[7]
2015 | Journal Article | PUB-ID: 2753057
Complete Genome Sequence of Corynebacterium camporealensis DSM 44610, Isolated from the Milk of a Manchega Sheep with Subclinical Mastitis
Rückert C, Albersmeier A, Winkler A, Tauch A (2015)
Genome announcements 3(3).
PUB | DOI | PubMed | Europe PMC
 
[6]
2015 | Journal Article | PUB-ID: 2769395
Complete Genome Sequence of the Type Strain Corynebacterium epidermidicanis DSM 45586, Isolated from the Skin of a Dog Suffering from Pruritus
Rückert C, Eimer J, Winkler A, Tauch A (2015)
Genome announcements 3(4).
PUB | DOI | PubMed | Europe PMC
 
[5]
2015 | Journal Article | PUB-ID: 2753051
Complete Genome Sequence of Corynebacterium kutscheri DSM 20755, a Corynebacterial Type Strain with Remarkably Low G+C Content of Chromosomal DNA
Rückert C, Albersmeier A, Winkler A, Tauch A (2015)
Genome announcements 3(3).
PUB | DOI | PubMed | Europe PMC
 
[4]
2014 | Journal Article | PUB-ID: 2707731
Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant
Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A (2014)
Journal of Biotechnology 188: 136-137.
PUB | DOI | WoS | PubMed | Europe PMC
 
[3]
2014 | Journal Article | PUB-ID: 2717539
Complete genome sequence of the methanogenic neotype strain Methanobacterium formicicum MFT
Maus I, Stantscheff R, Wibberg D, Stolze Y, Winkler A, Pühler A, König H, Schlüter A (2014)
Journal of Biotechnology 192: 40-41.
PUB | DOI | WoS | PubMed | Europe PMC
 
[2]
2014 | Journal Article | PUB-ID: 2689746
Complete genome sequence of *Bacillus methanolicus* MGA3, a thermotolerant amino acid producing methylotroph
Irla M, Neshat A, Winkler A, Albersmeier A, Heggeset TM, Brautaset T, Kalinowski J, Wendisch VF, Rückert C (2014)
Journal of Biotechnology 188: 110-111.
PUB | DOI | WoS | PubMed | Europe PMC
 
[1]
2013 | Journal Article | PUB-ID: 2633427
Draft Genome Sequence of Sinorhizobium meliloti RU11/001, a model organism for flagellum structure, motility and chemotaxis
Wibberg D, Blom J, Rückert C, Winkler A, Albersmeier A, Pühler A, Schlüter A, Scharf BE (2013)
Journal of Biotechnology 168(4): 731-733.
PUB | DOI | WoS | PubMed | Europe PMC
 
0Marked Publication(s)

Search

Filter Publications

Display / Sort

Export / Embed