Comparative Methods for Reconstructing Ancient Genome Organization

Anselmetti Y, Luhmann N, Bérard S, Tannier E, Chauve C (2018)
In: Comparative Genomics: Methods and Protocols. Setubal JC, Stoye J, Stadler P (Eds); Methods in Molecular Biology, 1704. New York, NY: Humana Press: 343-362.

Sammelwerksbeitrag | Veröffentlicht | Englisch
 
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Autor*in
Anselmetti, Yoann; Luhmann, NinaUniBi ; Bérard, Sèverine; Tannier, Eric; Chauve, Cedric
Herausgeber*in
Setubal, João C.; Stoye, Jens; Stadler, Peter
Abstract / Bemerkung
Comparative genomics considers the detection of similarities and differences between extant genomes, and, based on more or less formalized hypotheses regarding the involved evolutionary processes, inferring ancestral states explaining the similarities and an evolutionary history explaining the differences. In this chapter, we focus on the reconstruction of the organization of ancient genomes into chromosomes. We review different methodological approaches and software, applied to a wide range of datasets from different kingdoms of life and at different evolutionary depths. We discuss relations with genome assembly, and potential approaches to validate computational predictions on ancient genomes that are almost always only accessible through these predictions.
Erscheinungsjahr
2018
Buchtitel
Comparative Genomics: Methods and Protocols
Band
1704
Seite(n)
343-362
ISBN
978-1-4939-7461-0
Page URI
https://pub.uni-bielefeld.de/record/2913924

Zitieren

Anselmetti Y, Luhmann N, Bérard S, Tannier E, Chauve C. Comparative Methods for Reconstructing Ancient Genome Organization. In: Setubal JC, Stoye J, Stadler P, eds. Comparative Genomics: Methods and Protocols. Methods in Molecular Biology. Vol 1704. New York, NY: Humana Press; 2018: 343-362.
Anselmetti, Y., Luhmann, N., Bérard, S., Tannier, E., & Chauve, C. (2018). Comparative Methods for Reconstructing Ancient Genome Organization. In J. C. Setubal, J. Stoye, & P. Stadler (Eds.), Methods in Molecular Biology: Vol. 1704. Comparative Genomics: Methods and Protocols (pp. 343-362). New York, NY: Humana Press. doi:10.1007/978-1-4939-7463-4_13
Anselmetti, Y., Luhmann, N., Bérard, S., Tannier, E., and Chauve, C. (2018). “Comparative Methods for Reconstructing Ancient Genome Organization” in Comparative Genomics: Methods and Protocols, Setubal, J. C., Stoye, J., and Stadler, P. eds. Methods in Molecular Biology, vol. 1704, (New York, NY: Humana Press), 343-362.
Anselmetti, Y., et al., 2018. Comparative Methods for Reconstructing Ancient Genome Organization. In J. C. Setubal, J. Stoye, & P. Stadler, eds. Comparative Genomics: Methods and Protocols. Methods in Molecular Biology. no.1704 New York, NY: Humana Press, pp. 343-362.
Y. Anselmetti, et al., “Comparative Methods for Reconstructing Ancient Genome Organization”, Comparative Genomics: Methods and Protocols, J.C. Setubal, J. Stoye, and P. Stadler, eds., Methods in Molecular Biology, vol. 1704, New York, NY: Humana Press, 2018, pp.343-362.
Anselmetti, Y., Luhmann, N., Bérard, S., Tannier, E., Chauve, C.: Comparative Methods for Reconstructing Ancient Genome Organization. In: Setubal, J.C., Stoye, J., and Stadler, P. (eds.) Comparative Genomics: Methods and Protocols. Methods in Molecular Biology. 1704, p. 343-362. Humana Press, New York, NY (2018).
Anselmetti, Yoann, Luhmann, Nina, Bérard, Sèverine, Tannier, Eric, and Chauve, Cedric. “Comparative Methods for Reconstructing Ancient Genome Organization”. Comparative Genomics: Methods and Protocols. Ed. João C. Setubal, Jens Stoye, and Peter Stadler. New York, NY: Humana Press, 2018.Vol. 1704. Methods in Molecular Biology. 343-362.

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