Robust normalization protocols for multiplexed fluorescence bioimage analysis

Ahmed Raza SE, Langenkämper D, Sirinukunwattana K, Epstein D, Nattkemper TW, Rajpoot NM (2016)
BioData Mining 9(1): 11.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
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DOI
Autor*in
Ahmed Raza, Shan E; Langenkämper, DanielUniBi ; Sirinukunwattana, Korsuk; Epstein, David; Nattkemper, Tim WilhelmUniBi ; Rajpoot, Nasir M.
Einrichtung
Technische Fakultät > AG Genominformatik
Technische Fakultät > AG Biodata Mining
Erscheinungsjahr
2016
Zeitschriftentitel
BioData Mining
Band
9
Ausgabe
1
Art.-Nr.
11
Urheberrecht / Lizenzen
Creative Commons Namensnennung 4.0 International Public License (CC-BY 4.0)
ISSN
1756-0381
Page URI
https://pub.uni-bielefeld.de/record/2901477

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Ahmed Raza SE, Langenkämper D, Sirinukunwattana K, Epstein D, Nattkemper TW, Rajpoot NM. Robust normalization protocols for multiplexed fluorescence bioimage analysis. BioData Mining. 2016;9(1): 11.
Ahmed Raza, S. E., Langenkämper, D., Sirinukunwattana, K., Epstein, D., Nattkemper, T. W., & Rajpoot, N. M. (2016). Robust normalization protocols for multiplexed fluorescence bioimage analysis. BioData Mining, 9(1), 11. doi:10.1186/s13040-016-0088-2
Ahmed Raza, Shan E, Langenkämper, Daniel, Sirinukunwattana, Korsuk, Epstein, David, Nattkemper, Tim Wilhelm, and Rajpoot, Nasir M. 2016. “Robust normalization protocols for multiplexed fluorescence bioimage analysis”. BioData Mining 9 (1): 11.
Ahmed Raza, S. E., Langenkämper, D., Sirinukunwattana, K., Epstein, D., Nattkemper, T. W., and Rajpoot, N. M. (2016). Robust normalization protocols for multiplexed fluorescence bioimage analysis. BioData Mining 9:11.
Ahmed Raza, S.E., et al., 2016. Robust normalization protocols for multiplexed fluorescence bioimage analysis. BioData Mining, 9(1): 11.
S.E. Ahmed Raza, et al., “Robust normalization protocols for multiplexed fluorescence bioimage analysis”, BioData Mining, vol. 9, 2016, : 11.
Ahmed Raza, S.E., Langenkämper, D., Sirinukunwattana, K., Epstein, D., Nattkemper, T.W., Rajpoot, N.M.: Robust normalization protocols for multiplexed fluorescence bioimage analysis. BioData Mining. 9, : 11 (2016).
Ahmed Raza, Shan E, Langenkämper, Daniel, Sirinukunwattana, Korsuk, Epstein, David, Nattkemper, Tim Wilhelm, and Rajpoot, Nasir M. “Robust normalization protocols for multiplexed fluorescence bioimage analysis”. BioData Mining 9.1 (2016): 11.

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31 References

Daten bereitgestellt von Europe PubMed Central.

Toponome imaging system: multiplex biomarkers in oncology.
Evans RG, Naidu B, Rajpoot NM, Epstein D, Khan M., Trends Mol Med 18(12), 2012
PMID: 23122853
Analyzing proteome topology and function by automated multidimensional fluorescence microscopy.
Schubert W, Bonnekoh B, Pommer AJ, Philipsen L, Bockelmann R, Malykh Y, Gollnick H, Friedenberger M, Bode M, Dress AW., Nat. Biotechnol. 24(10), 2006
PMID: 17013374
Highly multiplexed single-cell analysis of formalin-fixed, paraffin-embedded cancer tissue.
Gerdes MJ, Sevinsky CJ, Sood A, Adak S, Bello MO, Bordwell A, Can A, Corwin A, Dinn S, Filkins RJ, Hollman D, Kamath V, Kaanumalle S, Kenny K, Larsen M, Lazare M, Li Q, Lowes C, McCulloch CC, McDonough E, Montalto MC, Pang Z, Rittscher J, Santamaria-Pang A, Sarachan BD, Seel ML, Seppo A, Shaikh K, Sui Y, Zhang J, Ginty F., Proc. Natl. Acad. Sci. U.S.A. 110(29), 2013
PMID: 23818604
A novel, automated technology for multiplex biomarker imaging and application to breast cancer.
Clarke GM, Zubovits JT, Shaikh KA, Wang D, Dinn SR, Corwin AD, Santamaria-Pang A, Li Q, Nofech-Mozes S, Liu K, Pang Z, Filkins RJ, Yaffe MJ., Histopathology 64(2), 2013
PMID: 24330149
Imaging mass spectrometry: a new technology for the analysis of protein expression in mammalian tissues.
Stoeckli M, Chaurand P, Hallahan DE, Caprioli RM., Nat. Med. 7(4), 2001
PMID: 11283679
Highly multiplexed imaging of tumor tissues with subcellular resolution by mass cytometry.
Giesen C, Wang HA, Schapiro D, Zivanovic N, Jacobs A, Hattendorf B, Schuffler PJ, Grolimund D, Buhmann JM, Brandt S, Varga Z, Wild PJ, Gunther D, Bodenmiller B., Nat. Methods 11(4), 2014
PMID: 24584193
Mass cytometry: technique for real time single cell multitarget immunoassay based on inductively coupled plasma time-of-flight mass spectrometry.
Bandura DR, Baranov VI, Ornatsky OI, Antonov A, Kinach R, Lou X, Pavlov S, Vorobiev S, Dick JE, Tanner SD., Anal. Chem. 81(16), 2009
PMID: 19601617
Single-cell Raman and fluorescence microscopy reveal the association of lipid bodies with phagosomes in leukocytes.
van Manen HJ, Kraan YM, Roos D, Otto C., Proc. Natl. Acad. Sci. U.S.A. 102(29), 2005
PMID: 16002471

AUTHOR UNKNOWN, 0
Sample preparation for mass spectrometry imaging: small mistakes can lead to big consequences.
Goodwin RJA., J Proteomics 75(16), 2012
PMID: 22554910
Next-generation biomarkers based on 100-parameter functional super-resolution microscopy TIS.
Schubert W, Gieseler A, Krusche A, Serocka P, Hillert R., N Biotechnol 29(5), 2011
PMID: 22209707
Toponome Imaging System (TIS): imaging the proteome with functional resolution
Bode M, Krusche A., 2007
Fluorescence detection of protein clusters in individual cells and tissue sections by using toponome imaging system: sample preparation and measuring procedures.
Friedenberger M, Bode M, Krusche A, Schubert W., Nat Protoc 2(9), 2007
PMID: 17853885
RAMTaB: robust alignment of multi-tag bioimages.
Raza SE, Humayun A, Abouna S, Nattkemper TW, Epstein DB, Khan M, Rajpoot NM., PLoS ONE 7(2), 2012
PMID: 22363510
A neural classifier enabling high-throughput topological analysis of lymphocytes in tissue sections.
Nattkemper TW, Ritter HJ, Schubert W., IEEE Trans Inf Technol Biomed 5(2), 2001
PMID: 11420992
A neural network architecture for automatic segmentation of fluorescence micrographs
Nattkemper TW, Wersing H, Schubert W, Ritter H., 2002
Automatic recognition of muscle-invasive t-lymphocytes expressing Dipeptidyl-Peptidase IV (CD26) and analysis of the associated cell surface phenotypes
Schubert W, Friedenberger M, Haars R, Bode M, Philipsen L, Nattkemper T., 2002
Automated detection and quantification of fluorescently labeled synapses in murine brain tissue sections for high throughput applications.
Herold J, Schubert W, Nattkemper TW., J. Biotechnol. 149(4), 2010
PMID: 20230863
Cell phenotyping in multi-tag fluorescent bioimages
Khan AM, Raza SEA, Khanm M, Rajpoot NM., 2014
BioIMAX: a Web 2.0 approach for easy exploratory and collaborative access to multivariate bioimage data.
Loyek C, Rajpoot NM, Khan M, Nattkemper TW., BMC Bioinformatics 12(), 2011
PMID: 21777450
WHIDE--a web tool for visual data mining colocation patterns in multivariate bioimages.
Kolling J, Langenkamper D, Abouna S, Khan M, Nattkemper TW., Bioinformatics 28(8), 2012
PMID: 22390938
DiSWOP: a novel measure for cell-level protein network analysis in localized proteomics image data.
Kovacheva VN, Khan AM, Khan M, Epstein DB, Rajpoot NM., Bioinformatics 30(3), 2013
PMID: 24273247
Toponomics analysis of drug-induced changes in arachidonic acid-dependent signaling pathways during spinal nociceptive processing.
Linke B, Pierre S, Coste O, Angioni C, Becker W, Maier TJ, Steinhilber D, Wittpoth C, Geisslinger G, Scholich K., J. Proteome Res. 8(10), 2009
PMID: 19697962
Robust data processing and normalization strategy for MALDI mass spectrometric imaging.
Fonville JM, Carter C, Cloarec O, Nicholson JK, Lindon JC, Bunch J, Holmes E., Anal. Chem. 84(3), 2012
PMID: 22148759
Automatic single cell segmentation on highly multiplexed tissue images.
Schuffler PJ, Schapiro D, Giesen C, Wang HA, Bodenmiller B, Buhmann JM., Cytometry A 87(10), 2015
PMID: 26147066
Toponome imaging system: in situ protein network mapping in normal and cancerous colon from the same patient reveals more than five-thousand cancer specific protein clusters and their subcellular annotation by using a three symbol code.
Bhattacharya S, Mathew G, Ruban E, Epstein DB, Krusche A, Hillert R, Schubert W, Khan M., J. Proteome Res. 9(12), 2010
PMID: 20822185
Bilateral filtering for gray and color images
Tomasi C, Manduchi R., 1998

González RC, Woods RE., 2008
Pattern. Pattern Recognition and Machine Learning
Bishop CM., 2006
Multivariate image mining
Herold J, Loyek C, Nattkemper TW., 2011

Bigi B., 2003
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