164 Publications

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[164]
2017 | Journal Article | PUB-ID: 2911830
ViCAR: An Adaptive and Landmark-Free Registration of Time Lapse Image Data from Microfluidics Experiments
Hattab G, Schlüter J-P, Becker A, Nattkemper TW (2017)
Frontiers in Genetics 8: 69.
PUB | PDF | DOI
 
[163]
2017 | Journal Article | PUB-ID: 2909190
BIIGLE 2.0 - Browsing and Annotating Large Marine Image Collections
Langenkämper D, Zurowietz M, Schoening T, Nattkemper TW (2017)
Frontiers in Marine Science 4: 83.
PUB | Files available | DOI
 
[162]
2017 | Conference Abstract | PUB-ID: 2908753
Extracting Scalar Quantities from Underwater Images - a Toolbox for Image Data from Fixed Observatories.
Osterloff J, Möller T, Nilssen I, Nattkemper TW (2017)
Presented at the Marine Imaging Workshop 2017, Kiel.
PUB | PDF
 
[161]
2016 | Journal Article | PUB-ID: 2905905
Current and future trends in marine image annotation software
Nuno Gomes-Pereira J, Auger V, Beisiegel K, Benjamin R, Bergmann M, Bowden D, Buhl-Mortensen P, De Leo FC, Dionísio G, Durden JM, Edwards L, et al. (2016)
Progress in Oceanography 149: 106-129.
PUB | DOI
 
[160]
2016 | Book Chapter | PUB-ID: 2903653
Perspectives in Visual Imaging for Marine Biology and Ecology: From Acquisition to Understanding
Durden J, Schoening T, Althaus F, Friedmann A, Garica R, Glover AG, Greinert J, Stout NJ, Jones DOB, Jordt A, Kaeli JW, et al. (2016)
In: Oceanography and Marine Biology: An Annual Review. Hughes RN, Hughes DJ, Smith IP, Dale AC (Eds); 54. Boca Raton: CRC Press: 1-72.
PUB | WoS
 
[159]
2016 | Journal Article | PUB-ID: 2907705
Omics Fusion - A Platform for Integrative Analysis of Omics Data
Brink B, Seidel A, Kleinbölting N, Nattkemper TW, Albaum S (2016)
Journal of Integrative Bioinformatics 13(4: SI): 296.
PUB | DOI | WoS | PubMed | Europe PMC
 
[158]
2016 | Conference Paper | PUB-ID: 2906522
Polyp activity estimation and monitoring for cold water corals with a deep learning approach
Osterloff J, Nilssen I, Järnegren J, Buhl-Mortensen P, Nattkemper TW (2016)
In: Proceedigs of CVAUI 2016 (ICPR Workshop).
PUB | DOI
 
[157]
2016 | Conference Paper | PUB-ID: 2903711
Computational Coral Feature Monitoring for the fixed underwater Observatory LoVe
Osterloff J, Nilssen I, Nattkemper TW (2016)
In: Proceedings of IEEE OCEANS 2016.
PUB | DOI
 
[156]
2016 | Journal Article | PUB-ID: 2900943
Comparison of Acceleration Techniques for Selected Low-Level Bioinformatics Operations
Langenkämper D, Jakobi T, Feld D, Jelonek L, Goesmann A, Nattkemper TW (2016)
Frontiers in Genetics 7: 5.
PUB | DOI | WoS | PubMed | Europe PMC
 
[155]
2016 | Journal Article | PUB-ID: 2901413
Spatio-Temporal Metabolite Profiling of the Barley Germination Process by MALDI MS Imaging
Gorzolka K, Kölling J, Nattkemper TW, Niehaus K (2016)
PLOS ONE 11(3): 0150208.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[154]
2016 | Conference Paper | PUB-ID: 2906524
Data-driven Long Term Change Analysis in Marine Observatory Image Streams
Möller T, Nilssen I, Nattkemper TW (Accepted)
In: Proceedings of CVAUI 2016.
PUB
 
[153]
2016 | Journal Article | PUB-ID: 2902750
RecoMIA - Recommendations for marine image annotation: Lessons learned and future directions
Schoening T, Osterloff J, Nattkemper TW (2016)
Frontiers in Marine Science 3: 59.
PUB | PDF | DOI
 
[152]
2016 | Journal Article | PUB-ID: 2903363
Comparison of image annotation data generated by multiple investigators for benthic ecology
Durden JM, Bett BJ, Schoening T, Morris KJ, Ruhl HA, Nattkemper TW (2016)
Marine Ecology Progress Series 552: 61-70.
PUB | DOI | WoS
 
[151]
2016 | Journal Article | PUB-ID: 2903712
Computational Visual Stress Level Analysis of Calcareous Algae Exposed to Sedimentation
Osterloff J, Nilssen I, Eide I, de Oliveira Figueiredo MA, de Souza Tâmega FT, Nattkemper TW (2016)
PLOS ONE 11(6): e0157329.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[150]
2016 | Conference Paper | PUB-ID: 2904670
COATL - A Learning Architecture for Online Real-Time Detection and Classification Assistance for Environmental Data
Langenkämper D, Nattkemper TW (Accepted)
In: Proceedings of the International Conference on Pattern Recognition (ICPR).
PUB
 
[149]
2016 | Conference Paper | PUB-ID: 2904671
Change Detection in Marine Observatory Image Streams using Bi-Domain Feature Clustering
Möller T, Nilssen I, Nattkemper TW (Accepted)
In: Proceedings of the International Conference on Pattern Recognition (ICPR).
PUB
 
[148]
2016 | Journal Article | PUB-ID: 2902857
Fully automated image segmentation for benthic resource assessment of poly-metallic nodules
Schoening T, Kuhn T, Jones DOB, Simon-Lledo E, Nattkemper TW (Accepted)
Methods in Oceanography.
PUB | DOI
 
[147]
2016 | Journal Article | PUB-ID: 2902749 PUB | DOI
 
[146]
2016 | Journal Article | PUB-ID: 2901477
Robust normalization protocols for multiplexed fluorescence bioimage analysis
Ahmed Raza SE, Langenkämper D, Sirinukunwattana K, Epstein D, Nattkemper TW, Rajpoot NM (2016)
BioData Mining 9(1): 11.
PUB | DOI | WoS
 
[145]
2015 | Journal Article | PUB-ID: 2722138
Learning to classify organic and conventional wheat - a machine-learning driven approach using the MeltDB 2.0 metabolomics analysis platform
Kessler N, Bonte A, Albaum S, Mäder P, Messmer M, Goesmann A, Niehaus K, Langenkämper G, Nattkemper TW (2015)
Frontiers in Bioinformatics and Computational Biology 3: 35.
PUB | PDF | DOI
 
[144]
2015 | Conference Paper | PUB-ID: 2775947
Rapid image processing and classification in underwater exploration using advanced high performance computing
Schoening T, Langenkämper D, Steinbrink B, Brün D, Nattkemper TW (In Press)
In: Proc. of the IEEE Oceans. Washington DC, USA: IEEE.
PUB
 
[143]
2015 | Conference Abstract | PUB-ID: 2775956
Integrated Digital Marine Image Analysis and Management - new solutions to handle large image collections in environmental monitoring and exploration
Steinbrink B, Schoening T, Brün D, Nattkemper TW (2015)
Presented at the GEOHAB, Salvador, Brazil.
PUB | PDF
 
[142]
2015 | Journal Article | PUB-ID: 2724431 PUB | PDF | DOI
 
[141]
2015 | Conference Abstract | PUB-ID: 2735538
Computational analysis of spatial species distribution for integrated stationary environmental monitoring
Osterloff J, Nilssen I, Möller T, Nattkemper TW (2015)
Presented at the Geohab 2015, Salvador, Bahia, Brazil.
PUB | PDF
 
[140]
2014 | Conference Paper | PUB-ID: 2683648
Ranking Color Correction Algorithms using Cluster Indices
Osterloff J, Schoening T, Bergmann M, Durden JM, Ruhl HA, Nattkemper TW (2014)
Presented at the ICPR Workshop on Computer Vision for Analysis of Underwater Imagery, Stockhom.
PUB | DOI
 
[139]
2014 | Conference Abstract | PUB-ID: 2690300
Interactive Exploration of Spatial Distribution in Mass Spectrometry Imaging
Kölling J, Zurowietz M, Nattkemper TW (2014)
Presented at the 4th Symposium on Biological Data Visualization (BioVis), Boston, MA, USA.
PUB
 
[138]
2014 | Conference Abstract | PUB-ID: 2690322
Interactive Exploration of Spatial Distribution in Mass Spectrometry Imaging
Kölling J, Zurowietz M, Nattkemper TW (2014)
Presented at the 22nd Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Boston, MA, USA.
PUB
 
[137]
2014 | Journal Article | PUB-ID: 2706029
ALLocator: An Interactive Web Platform for the Analysis of Metabolomic LC-ESI-MS Datasets, Enabling Semi-Automated, User-Revised Compound Annotation and Mass Isotopomer Ratio Analysis
Kessler N, Walter F, Persicke M, Albaum S, Kalinowski J, Goesmann A, Niehaus K, Nattkemper TW (2014)
PLoS ONE 9(11): e113909.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[136]
2014 | Conference Abstract | PUB-ID: 2690436
Spatio-temporal analysis of metabolite profiles during barley germination
Kölling J, Gorzolka K, Niehaus K, Nattkemper TW (In Press)
Presented at the German Conference on Bioinformatics (GCB), Bielefeld, Germany.
PUB | PDF
 
[135]
2014 | Conference Paper | PUB-ID: 2690335
Interactive and dynamic web-based visual exploration of high dimensional bioimages with real time clustering
Rathke M, Kölling J, Gorzolka K, Niehaus K, Nattkemper TW (In Press)
Presented at the German Conference on Bioinformatics (GCB), Bielefeld, Germany.
PUB
 
[134]
2014 | Conference Abstract | PUB-ID: 2775961
Image-based marine resource exploration and biodiversity assessment with MAMAS (Marine data Asset Management and Analysis System)
Schoening T, Brün D, Kuhn T, Nattkemper TW (2014)
Presented at the UMI (Underwater Mining Institute), Lisbon, Portugal.
PUB
 
[133]
2014 | Conference Abstract | PUB-ID: 2901695
German Conference on Bioinformatics 2014
Giegerich R, Hofestädt R, Nattkemper TW (2014) .
PUB
 
[132]
2014 | Journal Article | PUB-ID: 2705712
AKE - The Accelerated k-mer Exploration Web-Tool for Rapid Taxonomic Classification and Visualization
Langenkämper D, Goesmann A, Nattkemper TW (2014)
BMC Bioinformatics 15: 384.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[131]
2014 | Conference Abstract | PUB-ID: 2655889
An overview and rating of benthic image pre-processings for color constancy
Osterloff J, Schoening T, Bergmann M, Nattkemper TW (2014)
Presented at the Marine Imaging Workshop, National Oceanography Centre, Southampton, UK.
PUB
 
[130]
2014 | Conference Paper | PUB-ID: 2717407
Seabed Classification Using a Bag-of-Prototypes Feature Representation
Schoening T, Kuhn T, Nattkemper TW (2014)
In: Computer Vision for Analysis of Underwater Imagery (CVAUI), 2014 ICPR Workshop on. 17-24.
PUB | DOI
 
[129]
2014 | Conference Abstract | PUB-ID: 2676320
Automated Image based Biomass Quantification in Mesocosm Studies
Osterloff J, Nilssen I, de Oliveira Figueiredo MA, de Souza Tâmega FT, Möller T, Nattkemper TW (2014)
Presented at the Geohab 2014, Lorne, Victoria, Australia.
PUB | PDF
 
[128]
2014 | Conference Abstract | PUB-ID: 2676334
Novelty detection in time lapse image data
Möller T, Nilssen I, Sumida PYG, Elbers KL, Nattkemper TW (2014)
Presented at the Geohab 2014, Lorne, Victoria, Australia.
PUB
 
 
[126]
2013 | Conference Paper | PUB-ID: 2538625
Einsatz von Protein- und Metabolit-Profiling-Methoden zur Unterscheidung von ökologischem und konventionellem Weizen
Bonte A, Kessler N, Nattkemper TW, Goesmann A, Cecile T, Mäder P, Niehaus K, Langenkämper G (In Press)
Presented at the 12. Wissenschaftstagung Ökologischer Landbau „Ideal und Wirklichkeit – Perspektiven Ökologischer Landbewirtschaftung“, Bonn, Germany.
PUB
 
[125]
2013 | Journal Article | PUB-ID: 2610129
MeltDB 2.0 - Advances of the metabolomics software system
Kessler N, Bonte A, Langenkämper G, Niehaus K, Goesmann A, Nattkemper TW (2013)
Bioinformatics 29(19): 2452-2459.
PUB | DOI | WoS | PubMed | Europe PMC
 
[124]
2013 | Conference Abstract | PUB-ID: 2656093
Application of Hydro-Acoustic and Video Data for the Exploration of Manganese Nodule Fields
Kuhn T, Rühlemann C, Wiedicke-Hombach M, Schoening T, Nattkemper TW (2013)
Presented at the ISOPE OMS, Szczecin, Poland.
PUB
 
[123]
2013 | Conference Abstract | PUB-ID: 2656054
A machine-learning system for the automated detection of megafauna and its applicability unseen footage
Schoening T, Bergmann M, Nattkemper TW (2013)
Presented at the GEOHAB, Rome.
PUB
 
[122]
2013 | Journal Article | PUB-ID: 2625914
Categorization of two-photon microscopy images of human cartilage into states of osteoarthritis
Bergmann T, Maeder U, Fiebich M, Dickob M, Nattkemper TW, Anselmetti D (2013)
Osteoarthritis And Cartilage 21(8): 1074-1082.
PUB | DOI | WoS | PubMed | Europe PMC
 
[121]
2013 | Journal Article | PUB-ID: 2542584
Approaches to automatic parameter fitting in a microscopy image segmentation pipeline: An exploratory parameter space analysis
Held C, Nattkemper TW, Palmisano R, Wittenberg T (2013)
Journal of Pathology Informatics 4(2): 5.
PUB | DOI | PubMed | Europe PMC
 
[120]
2013 | Journal Article | PUB-ID: 2610505
Microhabitat and shrimp abundance within a Norwegian cold-water coral ecosystem
Purser A, Ontrup J, Schoening T, Thomsen L, Tong R, Unnithan V, Nattkemper TW (2013)
Biogeosciences 10(9): 5779-5791.
PUB | DOI | WoS
 
[119]
2013 | Book Chapter | PUB-ID: 2610762
Cluster Analysis
Nattkemper TW (2013)
In: Encyclopedia of Systems Biology. Dubitzky W, Wolkenhauer O, Cho K-H, Yokota H (Eds); Springer.
PUB
 
[118]
2013 | Conference Paper | PUB-ID: 2610134
Ultra-fast segmentation and quantification of poly-metallic nodule coverage in high-resolution digital images
Schoening T, Steinbrink B, Brün D, Kuhn T, Nattkemper TW (In Press)
In: Proceedings of the UMI 2013.
PUB
 
[117]
2013 | Conference Paper | PUB-ID: 2537912
Using random forest to find Nuclear Export Signals (NESs) in proteins of Arabidopsis thaliana
Rubiano Castellanos CC, Merkle T, Nattkemper TW (In Press)
Presented at the BIOINFORMATICS Conf., Barcelona, Spain.
PUB
 
[116]
2012 | Journal Article | PUB-ID: 2481783
WHIDE - A web tool for visual data mining colocation patterns in multivariate bioimages
Kölling J, Langenkämper D, Sylvie A, Michale K, Nattkemper TW (2012)
Bioinformatics 28(8): 1143-1150.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[115]
2012 | Conference Paper | PUB-ID: 2515687
Analyzing Multi-Tag Bioimages with BIOIMAX colocation mining tools
Kölling J, Rathke M, Abouna S, Khan M, Nattkemper TW (2012)
Presented at the IEEE International Symposium on BIOMEDICAL IMAGING (ISBI), Barcelona.
PUB | PDF
 
[114]
2012 | Conference Abstract | PUB-ID: 2656105
Effects of drill cuttings on a deep water rhodolith bed: an integrated approach
Figueiredo Creed M, Coutinho R, Reynier MV, Cesar Paiva P, Villas AB, Bôas AB, Tapajó s de Souza Tâmega F, Nattkemper TW, Eide I (2012)
Presented at the V International Rhodolith Workshop, Granada, Spain.
PUB
 
[113]
2012 | Conference Abstract | PUB-ID: 2656067
The impact of experts’ inter- and intra-observer agreements on computational object classification in images from the deep seafloor of the HAUSGARTEN observatory.
Schoening T, Bergmann M, Purser A, Gutt J, Dannheim J, Taylor J, Nattkemper TW, Boetius A (2012)
Presented at the 13th International Deep-Sea Biology Symposium, Wellington, New Zealand.
PUB
 
[112]
2012 | Conference Paper | PUB-ID: 2656050
Estimation of poly-metallic nodule coverage in benthic images
Schoening T, Kuhn T, Nattkemper TW (2012)
In: Proc. of the 41st Conference of the Underwater Mining Institute (UMI).
PUB
 
[111]
2012 | Journal Article | PUB-ID: 2455753
RAMTaB: Robust Alignment of Multi-Tag Bioimages
Raza S-E-A, Epstein D, Nattkemper TW, Rajpoot N (2012)
PLoS ONE 7(2): e30894.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[110]
2012 | Conference Paper | PUB-ID: 2515671
Approaches to automatic parameter fitting in a microscopy image segmentation pipeline: An exploratory parameter space analysis
Held C, Nattkemper TW, Wittenberg T (2012)
Presented at the Histopathology Image Analysis (HIMA) workshop at MICCAI 2012, Nizza.
PUB
 
[109]
2012 | Journal Article | PUB-ID: 2536156
Re-Expression of IGF-II Is Important for Beta Cell Regeneration in Adult Mice
Zhou L, Pelengaris S, Abouna S, Young J, Epstein D, Herold J, Nattkemper TW, Nakhai H, Khan M (2012)
PLoS ONE 7(9): e43623.
PUB | DOI | WoS | PubMed | Europe PMC
 
[108]
2012 | Journal Article | PUB-ID: 2498232
Protein turnover quantification in a multi-labeling approach - from data calculation to evaluation
Trötschel C, Albaum S, Wolff D, Schröder S, Goesmann A, Nattkemper TW, Poetsch A (2012)
Molecular & Cellular Proteomics 11(8): 512-526.
PUB | DOI | WoS | PubMed | Europe PMC
 
[107]
2012 | Journal Article | PUB-ID: 2494458
Semi-automated image analysis for the assessment of megafaunal densities at the Arctic deep-sea observatory HAUSGARTEN
Schoening T, Bergmann M, Purser A, Dannheim J, Gutt J, Nattkemper TW (2012)
PLoS ONE 7(6): e38179.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[106]
2012 | Conference Paper | PUB-ID: 2515596
Are we ready for Science 2.0?
Nattkemper TW (In Press)
Presented at the 4th International Conference on Knowledge Management and Information Sharing (KMIS), Barcelona.
PUB | PDF
 
[105]
2012 | Conference Paper | PUB-ID: 2515700
Investigation of hidden parameters influencing the automated object detection in benthic images
Schoening T, Bergmann M, Boetius A, Nattkemper TW (2012)
Presented at the IEEE OCEANS 2012 MTS/IEEE, Hampton Roads, Virginia, USA.
PUB
 
[104]
2011 | Conference Paper | PUB-ID: 2323705
TICAL - a web-tool for multivariate image clustering and data topology preserving visualization
Langenkämper D, Kölling J, Abouna S, Khan M, Niehaus K, Nattkemper TW (2011)
Presented at the Microscopic Image Analysis with Applications in Biology (MIAAB), Heidelberg, Germany.
PUB | PDF
 
[103]
2011 | Conference Paper | PUB-ID: 2300232
A Web2.0 Strategy for the Collaborative Analysis of Complex Bioimages
Loyek C, Kölling J, Langenkämper D, Niehaus K, Nattkemper TW (2011)
In: Advances in Intelligent Data Analysis X: 10th International Symposium, IDA 2011, Porto, Portugal, October 29-31, 2011. Proceedings. Gama J, Bradley E, Hollmén J (Eds); Lecture Notes in Computer Science, 7014. Berlin, Heidelberg: Springer: 258-269.
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[102]
2011 | Journal Article | PUB-ID: 2300102
Quantification of Cell Infection Caused by Listeria monocytogenes Invasion
Arif M, Rajpoot N, Technow U, Chakraborty T, Fisch N, Jensen NA, Niehaus K, Nattkemper TW (2011)
Journal of Biotechnology 154(1): 76-83.
PUB | DOI | PubMed | Europe PMC
 
[101]
2011 | Journal Article | PUB-ID: 2300114
Web2.0 paves new ways for collaborative and exploratory analysis of Chemical Compounds in Spectrometry Data
Loyek C, Bunkowski A, Vautz W, Nattkemper TW (2011)
Journal of Integrative Bioinformatics 8(2).
PUB | DOI | PubMed | Europe PMC
 
[100]
2011 | Journal Article | PUB-ID: 2300092
Megafaunal assemblages from two shelf stations west of Svalbard
Bergmann M, Langwald N, Ontrup J, Soltwedel T, Schewe I, Klages M, Nattkemper TW (2011)
Marine Biology Research 7(6): 525-539.
PUB | DOI | WoS
 
[99]
2011 | Conference Paper | PUB-ID: 2300235
Towards improved epilepsia diagnosis by unsupervised segmentation of neuropathology tissue sections using Ripley’s-L features
Schoening T, Hans V, Nattkemper TW (2011)
In: Bildverarbeitung für die Medizin 2011:Algorithmen - Systeme - Anwendungen Proceedings des Workshops vom 20. - 22. März 2011 in Lübeck. Informatik aktuell. Berlin, Heidelberg: Springer: 44-48.
PUB | DOI
 
[98]
2011 | Conference Abstract | PUB-ID: 2656082
How to squeeze even more from your Terabytes of video data!
Purser A, Ontrup J, Schoening T, Thomsen L, Unnithan V, Nattkemper TW (2011) .
PUB
 
[97]
2011 | Conference Paper | PUB-ID: 2300237
Towards Protein Network Analysis using TIS Imaging and Exploratory Data Analysis
Langenkämper D, Jan K, Khan M, Rajpoot N, Nattkemper TW (2011)
Presented at the Workshop on Computational Systems Biology (WCSB), Zürich, Switzerland.
PUB | PDF
 
[96]
2011 | Journal Article | PUB-ID: 2300073
A Normalized Tree Index for identification of correlated clinical parameters in microarray data
Martin C, Tauchen A, Becker A, Nattkemper TW (2011)
BioData Mining 4(1): 2.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[95]
2011 | Journal Article | PUB-ID: 2300082
BIOIMAX - A Web 2.0 approach for easy exploratory and collaborative access to multivariate bioimage data
Loyek C, Khan M, Rajpoot N, Nattkemper TW (2011)
BMC Bioinformatics 12(1): 297.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[94]
2011 | Journal Article | PUB-ID: 2300063
A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study
Albaum S, Hahne H, Otto A, Haußmann U, Becher D, Poetsch A, Goesmann A, Nattkemper TW (2011)
Proteome Science 9(1): 30.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[93]
2011 | Conference Paper | PUB-ID: 2315356
Categorization of 2-photon microscopy images of human articular cartilage into states of arthritis
Bergmann T, Fiebich TM, Nattkemper TW, Anselmetti D (In Press)
Presented at the Tagung der Biomedizinischen Technik (BMT), Freiburg, Germany.
PUB
 
[92]
2011 | Journal Article | PUB-ID: 2373808
Multivariate Image Mining
Herold J, Loyek C, Nattkemper TW (2011)
Wiley Interdisciplinary Reviews: DATA MINING AND KNOWLEDGE DISCOVERY 1(1): 2-13.
PUB | DOI | WoS
 
[91]
2011 | Journal Article | PUB-ID: 2093532
Looking inside self-organizing map ensembles with resampling and negative correlation learning
Scherbart A, Nattkemper TW (2011)
Neural Networks 24(1): 130-141.
PUB | DOI | WoS | PubMed | Europe PMC
 
[90]
2010 | Journal Article | PUB-ID: 1929311
BioImaging: Contributions from biology, physics and informatics
Gölzhäuser A, Nattkemper TW, Niehaus K, Pühler A, Sauer M (2010)
Journal of Biotechnology 149(4): 227-228.
PUB | DOI | WoS | PubMed | Europe PMC
 
[89]
2010 | Journal Article | PUB-ID: 1929340
CellViCAM-Cell viability classification for animal cell cultures using dark field micrographs
Burgemeister S, Nattkemper TW, Noll T, Hoffrogge R, Flaschel E (2010)
JOURNAL OF BIOTECHNOLOGY 149(4): 310-316.
PUB | DOI | WoS | PubMed | Europe PMC
 
[88]
2010 | Journal Article | PUB-ID: 1794419
Integrating semantic annotation and information visualization for the analysis of multichannel fluorescence micrographs from pancreatic tissue
Herold J, Zhou L, Abouna S, Pelengaris S, Epstein D, Khan M, Nattkemper TW (2010)
Computerized Medical Imaging and Graphics 34(6): 446-452.
PUB | DOI | WoS | PubMed | Europe PMC
 
[87]
2010 | Journal Article | PUB-ID: 1929335 PUB | DOI | WoS | PubMed | Europe PMC
 
[86]
2009 | Conference Paper | PUB-ID: 1591448
On the application of (topographic) independent and tree-dependent component analysis for the examination of DCE-MRI data
Saalbach A, Lange O, Nattkemper TW, Meyer-Baese A (2009)
BIOMEDICAL SIGNAL PROCESSING AND CONTROL 4(3): 247-253.
PUB | DOI | WoS | PubMed | Europe PMC
 
[85]
2009 | Journal Article | PUB-ID: 1588783
Use of machine-learning algorithms for the automated detection of cold-water coral habitats: a pilot study
Purser A, Bergmann M, Ontrup J, Nattkemper TW (2009)
Marine Ecology Progress Series 397: 241-251.
PUB | DOI | WoS
 
[84]
2009 | Journal Article | PUB-ID: 1635314
TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach
Diaz NN, Krause L, Goesmann A, Niehaus K, Nattkemper TW (2009)
BMC Bioinformatics 10(1): 56.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[83]
2009 | Conference Paper | PUB-ID: 2018422
BIIGLE - Web 2.0 enabled labelling and exploring of images from the Arctic deep-sea observatory HAUSGARTEN
Ontrup J, Ehnert N, Bergmann M, Nattkemper TW (2009)
In: OCEANS 2009 - Europe. Bremen.
PUB | DOI
 
[82]
2009 | Journal Article | PUB-ID: 1589531
Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments
Albaum S, Neuweger H, Fraenzel B, Lange S, Mertens D, Troetschel C, Wolters D, Kalinowski J, Nattkemper TW, Goesmann A (2009)
Bioinformatics 25(23): 3128-3134.
PUB | DOI | WoS | PubMed | Europe PMC
 
[81]
2009 | Conference Paper | PUB-ID: 2018440
BIIGLE Tools - A Web 2.0 Approach for Visual Bioimage Database Mining
Schoening T, Ehnert N, Ontrup J, Nattkemper TW (2009)
In: IV 09 - Intl. Conference on Information Visualization.
PUB | DOI
 
[80]
2009 | Conference Paper | PUB-ID: 2018427
A Robust Adaptive Wavelet-based Method for Classification of Meningioma Histology Images
Qureshi H, Rajpoot N, Nattkemper TW, Hans V (2009)
In: MICCAI«2009 Workshop on Optical Tissue Image Analysis in Microscopy, Histology, and Endoscopy.
PUB
 
[79]
2009 | Conference Paper | PUB-ID: 2018390
A way towards analyzing high-content bioimage data by means of semantic annotation and visual data mining
Herold J, Abouna S, Zhou L, Pelengaris S, Epstein DBA, Khan M, Nattkemper TW (2009)
In: SPIE Medical Imaging.
PUB | DOI
 
[78]
2008 | Journal Article | PUB-ID: 1783364
Phylogenetic classification of short environmental DNA fragments
Krause L, Diaz NN, Goesmann A, Kelley S, Nattkemper TW, Rohwer F, Edwards RA, Stoye J (2008)
Nucleic Acids Research 36(7): 2230-2239.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[77]
2008 | Conference Paper | PUB-ID: 2018409
A Tree Index to Support Clustering Based Exploratory Data Analysis
Martin C, Nattkemper TW (2008)
In: Bioinformatics Research and Development : Second International Conference, BIRD 2008 Vienna, Austria, July 7-9, 2008 Proceedings. Communications in Computer and Information Science, 13. Berlin, Heidelberg: Springer: 1-15.
PUB | DOI
 
[76]
2008 | Journal Article | PUB-ID: 1585611 PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[75]
2008 | Journal Article | PUB-ID: 1636280
Peak intensity prediction in MALDI-TOF mass spectrometry: A machine learning study to support quantitative proteomics
Timm W, Scherbart A, Boecker S, Kohlbacher O, Nattkemper TW (2008)
BMC Bioinformatics 9(1): 443.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[74]
2008 | Conference Paper | PUB-ID: 2018381
ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract)
Albaum S, Neuweger H, Lange S, Mertens D, Runte K, Kalinowski J, Nattkemper TW, Goesmann A (2008)
In: HUPO 7th Annual World Congress.
PUB
 
[73]
2008 | Conference Paper | PUB-ID: 2018405
Detection of Focal Cortical Dysplasia in MRI Using Textural Features
Loyek C, Woermann FG, Nattkemper TW (2008)
In: Proceedings of BVM 2008. Berlin, Heidelberg: Springer Verlag: 432-436.
PUB | DOI
 
[72]
2008 | Journal Article | PUB-ID: 1630738
Identification of genes relevant to symbiosis and competitiveness in Sinorhizobium meliloti using signature-tagged mutants
Pobigaylo N, Szymczak S, Nattkemper TW, Becker A (2008)
MOLECULAR PLANT-MICROBE INTERACTIONS 21(2): 219-231.
PUB | DOI | WoS | PubMed | Europe PMC
 
[71]
2008 | Conference Paper | PUB-ID: 2018435
Improved Mass Spectrometry Peak Intensity Prediction by Adaptive Feature Weighting
Scherbart A, Timm W, Böcker S, Nattkemper TW (2008)
In: International Conference on Neural Information Processing. Auckland, New Zealand.
PUB | DOI
 
[70]
2008 | Conference Paper | PUB-ID: 2018398
Flexible Synapse Detection in Fluorescence Micrographs by Modeling Human Expert Grading
Herold J, Friedenberger M, Bode M, Rajpoot N, Schubert W, Nattkemper TW (2008)
In: Proc. of 2008 IEEE International Symposium on Biomedical Imaging.
PUB | DOI
 
[69]
2008 | Conference Paper | PUB-ID: 2018432
The Diversity of Regression Ensembles Combining Bagging and Random Subspace Method
Scherbart A, Nattkemper TW (2008)
In: International Conference on Neural Information Processing.
PUB | DOI
 
[68]
2008 | Journal Article | PUB-ID: 1588286
Model-free visualization of suspicious lesions in breast MRI based on supervised and unsupervised learning
Twellmann T, Meyer-Baese A, Lange O, Foo S, Nattkemper TW (2008)
ENGINEERING APPLICATIONS OF ARTIFICIAL INTELLIGENCE 21(2): 129-140.
PUB | DOI | WoS | PubMed | Europe PMC
 
[67]
2008 | Journal Article | PUB-ID: 1587052
Hyperbolic SOM-based clustering of DNA fragment features for taxonomic visualization and classification
Martin C, Diaz NN, Ontrup J, Nattkemper TW (2008)
Bioinformatics 24(14): 1568-1574.
PUB | DOI | WoS | PubMed | Europe PMC
 
[66]
2007 | Journal Article | PUB-ID: 1593120 PUB | DOI | WoS | PubMed | Europe PMC
 
[65]
2007 | Journal Article | PUB-ID: 1783345
GISMO - gene identification using a support vector machine for ORF classification
Krause L, McHardy AC, Nattkemper TW, Pühler A, Stoye J, Meyer F (2007)
Nucleic Acids Research 35(2): 540-549.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[64]
2007 | Book Chapter | PUB-ID: 2714021
Breast Tumor Classification and Visualization with Machine-Learning Approaches
Nattkemper TW, Degenhard A, Twellmann T (2007)
In: Cancer Imaging - Lung and breast carcinomas. Hayat MA (Ed); , 1. Academic Press: 309-321.
PUB
 
[63]
2007 | Book Chapter | PUB-ID: 2714040
Neural Network Approach for Mass Spectrometry Prediction by Peptide Prototyping
Scherbart A, Timm W, Boecker S, Nattkemper TW (2007)
In: Artificial Neural Networks – ICANN 2007 - 17th International Conference, Porto, Portugal, September 9-13, 2007, Proceedings, Part II. Sá de JM (Ed); Lecture Notes in Computer Science, 4669. Berlin: Springer: 90-99.
PUB | DOI
 
[62]
2007 | Conference Abstract | PUB-ID: 2714002
Use of automated image analysis to detect changes in megafaunal densities at HAUSGARTEN (79°N west off Svalbard) between 2002 and 2004
Lessmann B, Wang Y, Bergmann M, Kämpfe T, Nattkemper TW (2007)
Presented at the EMBS - 42nd European Marine Biology Symposium, Kiel, Germany.
PUB
 
[61]
2007 | Journal Article | PUB-ID: 2714032
Multiscale Analysis of MR Mammography Data
Lessmann B, Nattkemper TW, Kessar P, Pointon L, Khazen M, Leach MO, Degenhard A (2007)
Zeitschrift für Medizinische Physik (german journal of medical physics) 17(3): 166-171.
PUB
 
[60]
2007 | Conference Paper | PUB-ID: 2714045
SOM-based Peptide Prototyping for Mass Spectrometry Peak Intensity Prediction
Scherbart A, Timm W, Boecker S, Nattkemper TW (2007)
In: Proceedings of the 6th Workshop on Self-Organizing Maps (WSOM 07). Bielefeld, Germany.
PUB | DOI
 
[59]
2007 | Journal Article | PUB-ID: 1595739
In situ dark field microscopy for on-line monitoring of yeast cultures
Wei N, You J, Friehs K, Flaschel E, Nattkemper TW (2007)
BIOTECHNOLOGY LETTERS 29(3): 373-378.
PUB | DOI | WoS | PubMed | Europe PMC
 
[58]
2007 | Book Chapter | PUB-ID: 2018416
Breas
Nattkemper TW, Degenhard A, Twellmann T (2007)
In: Cancer Imaging - Lung and breast carcinomas. Hayat MA (Ed); , 1. Academic Press: 309-324.
PUB
 
[57]
2007 | Conference Paper | PUB-ID: 2018412
Genome feature exploration using hyperbolic Self-Organizing Maps
Martin C, Díaz Solórzano NN, Ontrup J, Nattkemper TW (2007)
In: WSOM.
PUB
 
[56]
2007 | Journal Article | PUB-ID: 1588474
Multiscale analysis of MR-mammography
Lessmann B, Nattkemper TW, Kessar P, Pointon L, Khazen M, Leach MO, Degenhard A (2007)
ZEITSCHRIFT FUR MEDIZINISCHE PHYSIK 17(3): 166-171.
PUB | DOI | WoS | PubMed | Europe PMC
 
[55]
2007 | Journal Article | PUB-ID: 1630749
A method for linking computed image features to histological semantics in neuropathology
Lessmann B, Nattkemper TW, Hans VH, Degenhard A (2007)
Journal of Biomedical Informatics 40(6): 631-641.
PUB | DOI | WoS | PubMed | Europe PMC
 
[54]
2006 | Journal Article | PUB-ID: 1598535
ISOLLE: LLE with geodesic distance
Varini C, Degenhard A, Nattkemper TW (2006)
NEUROCOMPUTING 69(13-15): 1768-1771.
PUB | DOI | WoS
 
[53]
2006 | Journal Article | PUB-ID: 1596731
Visual exploratory analysis of DCE-MRI data in breast cancer by dimensional data reduction: A comparative study
Varini C, Degenhard A, Nattkemper TW (2006)
BIOMEDICAL SIGNAL PROCESSING AND CONTROL 1(1): 56-63.
PUB | DOI | WoS
 
[52]
2006 | Journal Article | PUB-ID: 1598838
Construction of a large signature-tagged mini-Tn5 transposon library and its application to mutagenesis of Sinorhizobium meliloti
Pobigaylo N, Wetter D, Szymczak S, Schiller U, Kurtz S, Meyer F, Nattkemper TW, Becker A (2006)
APPLIED AND ENVIRONMENTAL MICROBIOLOGY 72(6): 4329-4337.
PUB | DOI | WoS | PubMed | Europe PMC
 
[51]
2006 | Conference Paper | PUB-ID: 2714065
Histologic Characterization of DCE-MRI Tumors with Dimensional Data Reduction
Varini C, Degenhard A, Nattkemper TW (2006)
In: Medical Imaging 2006: Image Processing. Proceedings of SPIE, 6144. San Diego, CA: SPIE.
PUB | DOI
 
[50]
2006 | Conference Paper | PUB-ID: 2714060
Feature space exploration of pathology images using Content-Based Database Visualization
Lessmann B, Hans V, Degenhard A, Nattkemper TW (2006)
In: Medical Imaging 2006: Image Processing. Proceedings of SPIE, 6144. San Diego, CA: SPIE.
PUB | DOI
 
[49]
2006 | Conference Paper | PUB-ID: 2714148
Visualizations of Suspicious Lesions in Breast MRI Based on Intelligent Neural Systems
Twellmann T, Lange O, Nattkemper TW, Meyer A (2006)
In: Intelligent Computing: Theory and Applications IV. Proceedings of SPIE, 6229. San Diego, CA: SPIE.
PUB | DOI
 
[48]
2006 | Journal Article | PUB-ID: 2714075 PUB
 
[47]
2006 | Conference Paper | PUB-ID: 2374232
Visual Exploration of Pathology Images by a Discrete Wavelet Transform Preprocessed Locally Linear Embedding.
Varini C, Lessmann B, Degenhard A, Hans VH, Nattkemper TW (2006)
In: Bildverarbeitung für die Medizin. Handels H, Ehrhardt J, Horsch A, Meinzer H-P, Tolxdorff T (Eds); Springer: 66-70.
PUB
 
[46]
2006 | Conference Paper | PUB-ID: 2374494
Peak intensity prediction for pmf mass spectra using support vector regression
Timm W, Böcker S, Twellmann T, Nattkemper TW (2006)
In: Proc. of the 7th International FLINS Conference on Applied Artificial Intelligence. 565-572.
PUB | DOI
 
[45]
2006 | Conference Paper | PUB-ID: 2374254
Content Based Image Retrieval for Dynamic Time Series Data
Lessmann B, Nattkemper TW, Huth J, Loyek C, Kessar P, Khazen M, Pointon L, Leach MO, Degenhard A (2006)
In: Proceedings of BVM. 61-65.
PUB
 
[44]
2006 | Conference Paper | PUB-ID: 1597259
Fusing biomedical multi-modal data for exploratory data analysis
Martin C, Deters H grosse, Nattkemper TW (2006)
In: ARTIFICIAL NEURAL NETWORKS - ICANN 2006, PT 2., 4132. SPRINGER-VERLAG BERLIN: 798-807.
PUB | DOI | WoS
 
[43]
2006 | Journal Article | PUB-ID: 1600329
A rapid reporter system using GFP as a reporter protein for identification and screening of synthetic stationary-phase promoters in Escherichia coli
Miksch G, Bettenworth F, Friehs K, Flaschel E, Saalbach A, Nattkemper TW (2006)
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 70(2): 229-236.
PUB | DOI | WoS | PubMed | Europe PMC
 
[42]
2005 | Conference Paper | PUB-ID: 1601906
SOM-based wavelet filtering for the exploration of medical images
Lessmann B, Degenhard A, Kessar P, Pointon L, Khazen M, Leach MO, Nattkemper TW (2005)
In: ARTIFICIAL NEURAL NETWORKS: BIOLOGICAL INSPIRATIONS - ICANN 2005, PT 1, PROCEEDINGS., 3696. SPRINGER-VERLAG BERLIN: 671-676.
PUB | DOI | WoS
 
[41]
2005 | Journal Article | PUB-ID: 1603560
Evaluation of radiological features for breast tumour classification in clinical screening with machine learning methods
Nattkemper TW, Arnrich B, Lichte O, Timm W, Degenhard A, Pointon L, Hayes C, Leach MO (2005)
ARTIFICIAL INTELLIGENCE IN MEDICINE 34(2): 129-139.
PUB | DOI | WoS | PubMed | Europe PMC
 
[40]
2005 | Book | PUB-ID: 2714309
An Online Monitoring System for the Screening of Stationary-Phase Promoters in E. Coli using GFP as a Reporter Protein
Bettenworth F, Miksch G, Fries K, Flaschel E, Saalbach A, Eickmeyer J, Nattkemper TW (2005) .
PUB
 
[39]
2005 | Conference Paper | PUB-ID: 2714331
Spectral Clustering for Data Categorization based on Self-Organizing Maps
Saalbach A, Twellmann T, Nattkemper TW (2005)
In: Applications of Neural Networks and Machine Learning in Image Processing IX. Nasser M. N (Ed); , 5673. San Jose, CA: 12-18.
PUB
 
[38]
2005 | Conference Paper | PUB-ID: 2714153
Clustering approach for wavelet transformed MR image data
Lessmann B, Nattkemper TW, Degenhard A, Pointon L, Kessar P, Khazen M, Leach MO (2005)
In: Proceedings of the 14th International Conference of Medical Physics. 1412.
PUB
 
[37]
2005 | Journal Article | PUB-ID: 2714263
An Adaptive Tissue Characterisation Network for Model-Free Visualisation of Dynamic Contrast-Enhanced Magnetic Resonance Image Data
Twellmann T, Lichte O, Nattkemper TW (2005)
IEEE Transactions on Medical Imaging 24(10): 1256-1266.
PUB | DOI | WoS | PubMed | Europe PMC
 
[36]
2005 | Journal Article | PUB-ID: 2714340
Tumour feature analysis with unsupervised machine learning
Nattkemper TW, Wismüller A (2005)
Medical Image Analysis 9(4): 344-351.
PUB | DOI | WoS | PubMed | Europe PMC
 
[35]
2005 | Journal Article | PUB-ID: 2374187
Image fusion based on topographic mappings using the hyperbolic space
Saalbach A, Ontrup J, Ritter H, Nattkemper TW (2005)
Information Visualization 4(4): 266-275.
PUB | DOI
 
[34]
2005 | Conference Paper | PUB-ID: 2374666
An Adaptive Colour Scale for Comparison of Pseudo Colouring Techniques for DCE-MRI Data
Twellmann T, Lichte O, Saalbach A, Wismüller A, Nattkemper TW (2005)
Presented at the Workshop für Bildverarbeiteung für die Medzin.
PUB
 
[33]
2005 | Conference Paper | PUB-ID: 2374546
A hyperbolic topographic mapping for proximity data
Saalbach A, Twellmann T, Nattkemper TW, Wismüller A, Ontrup J, Ritter H (2005)
In: Proc. of the IASTED International Conference of Artificial Intelligence and Applications., 2005. 106-111.
PUB
 
[32]
2005 | Journal Article | PUB-ID: 1946602
Reagent-free automatic cell viability determination using neural networks based machine vision and dark-field microscopy in Saccharomyces cerevisiae
Wei N, Flaschel E, Saalbach A, Twellmann T, Nattkemper TW (2005)
Conf Proc IEEE Eng Med Biol Soc 6.
PUB | DOI | PubMed | Europe PMC
 
[31]
2005 | Conference Paper | PUB-ID: 1601519
ISOLLE: Locally linear embedding with geodesic distance
Varini C, Degenhard A, Nattkemper TW (2005)
In: KNOWLEDGE DISCOVERY IN DATABASES: PKDD 2005., 3721. SPRINGER-VERLAG BERLIN: 331-342.
PUB | DOI | WoS
 
[30]
2005 | Journal Article | PUB-ID: 1602177
An adaptive tissue characterization network for model-free visualization of dynamic contrast-enhanced magnetic resonance image data
Twellmann T, Lichte O, Nattkemper TW (2005)
IEEE TRANSACTIONS ON MEDICAL IMAGING 24(10): 1256-1266.
PUB | DOI | WoS | PubMed | Europe PMC
 
[29]
2005 | Conference Paper | PUB-ID: 1601848
Libraries of synthetic stationary-phase and stress promoters as a tool for fine-tuning of expression of recombinant proteins in Escherichia coli
Miksch G, Bettenworth F, Friehs K, Flaschel E, Saalbach A, Twellmann T, Nattkemper TW (2005)
JOURNAL OF BIOTECHNOLOGY 120(1): 25-37.
PUB | DOI | WoS | PubMed | Europe PMC
 
[28]
2005 | Journal Article | PUB-ID: 1603030
Tumor feature visualization with unsupervised learning
Nattkemper TW, Wismuller A (2005)
MEDICAL IMAGE ANALYSIS 9(4): 344-351.
PUB | DOI | WoS | PubMed | Europe PMC
 
[27]
2005 | Journal Article | PUB-ID: 1602344
Machine learning approaches for phenotype-genotype mapping: predicting heterozygous mutations in the CYP21B gene from steroid profiles
Prank K, Schulze E, Eckert O, Nattkemper TW, Bettendorf M, Maser-Gluth C, Sejnowski TJ, Grote A, Penner E, von zur Muhlen A, Brabant G (2005)
EUROPEAN JOURNAL OF ENDOCRINOLOGY 153(2): 301-305.
PUB | DOI | WoS | PubMed | Europe PMC
 
[26]
2004 | Conference Paper | PUB-ID: 2017550
A Hybrid System for Cell Detection in Digital Micrographs
Nattkemper TW, Schubert W, Hermann T, Ritter H (2004)
In: Biomedical Engineering, Proc. Tilg B (Ed); , 417. Innsbruck, Austria: ACTA Press.
PUB | PDF
 
[25]
2004 | Conference Paper | PUB-ID: 2714369
Breast MRI data analysis by LLE
Varini C, Nattkemper TW, Degenhard A, Wismüller A (2004)
In: Proceedings of International Joint Conference on Neural Networks., 3. Montreal, Canada: IEEE: 2449-2554.
PUB | DOI
 
[24]
2004 | Conference Paper | PUB-ID: 2714382
Visualization of Multivariate Image Data using Image Fusion and Perceptually Optimized Color Scales based on sRGB
Saalbach A, Twellmann T, Nattkemper TW, White MJ, Khazen M, Leach MO (2004)
In: Medical Imaging 2004: Visualization, Image-Guided Procedures, and Display. Robert L. Galloway J (Ed); Proceedings of SPIE, 5367. San Diego, CA: SPIE.
PUB | DOI
 
[23]
2004 | Conference Paper | PUB-ID: 2714346
Wavelet features for improved tumour detection in DCE-MRI
Lessmann B, Twellmann T, Degenhard A, Nattkemper TW, Leach MO (2004)
In: Proceedings of Medical Image Understanding and Analysis (MIUA). Rueckert D, Hajnal J, Yang G-Z (Eds); London, UK: BMVA: 93-96.
PUB
 
[22]
2004 | Journal Article | PUB-ID: 2714465
Multivariate image analysis in biomedicine: a methodological review
Nattkemper TW (2004)
Journal of Biomedical Informatics 37(5): 380-391.
PUB
 
[21]
2004 | Conference Paper | PUB-ID: 2714397
AQUISAR: Image Retrieval in Underwater Webcam Images
Kämpfe T, Nattkemper TW, Ritter H (2004)
In: WIAMIS 2004 : 5th International Workshop on Image Analysis for Multimedia Interactive Services. Lisboa, Portugal.
PUB
 
[20]
2004 | Journal Article | PUB-ID: 1666510
Image fusion for dynamic contrast enhanced magnetic resonance imaging
Twellmann T, Saalbach A, Gerstung O, Leach MO, Nattkemper TW (2004)
Biomed Eng Online 3(1): 35.
PUB | PDF | DOI | PubMed | Europe PMC
 
[19]
2004 | Conference Paper | PUB-ID: 2375262
Visualisation of Breast Tumour DCE-MRI Data using LLE
Varini C, Nattkemper TW, Degenhard A, Wismüller A (2004)
In: Proc. Medical Image Understanding and Analysis (MIUA). BMVA: 97-100.
PUB
 
[18]
2004 | Journal Article | PUB-ID: 1606041
Multivariate image analysis in biomedicine
Nattkemper TW (2004)
JOURNAL OF BIOMEDICAL INFORMATICS 37(5): 380-391.
PUB | DOI | WoS | PubMed | Europe PMC
 
[17]
2003 | Journal Article | PUB-ID: 1612741
Human vs. machine: evaluation of fluorescence micrographs
Nattkemper TW, Twellmann T, Ritter H, Schubert W (2003)
Computers in Biology and Medicine 33(1): 31-43.
PUB | DOI | WoS | PubMed | Europe PMC
 
[16]
2003 | Conference Paper | PUB-ID: 2017545
Look & Listen: Sonification and Visualization of Multiparameter Micrographs
Nattkemper TW, Hermann T, Schubert W, Ritter H (2003)
In: Engineering in Medicine and Biology Society. Proceedings of the 25th Annual International Conference of the IEEE., 2. Cancun, Mexico: IEEE: 1311-1314.
PUB | PDF
 
[15]
2003 | Conference Paper | PUB-ID: 2714496
A MeSH Term based Distance Measure for Document Retrieval and Labeling Assistance
Ontrup J, Nattkemper TW, Gerstung O, Ritter H (2003)
In: Proc. of EMBC2003. Cancun, Mexico: IEEE EMBS.
PUB
 
[14]
2003 | Conference Paper | PUB-ID: 2714487
Artificial Neural Networks Machine Learning Approaches for Multivariate Image Analysis
Twellmann T, Saalbach A, Nattkemper TW, Ritter H (2003)
In: Proceedings Linking mathematical and biological models in cancer research. Magdeburg.
PUB
 
[13]
2002 | Journal Article | PUB-ID: 1886441
Automatic recognition of muscle invasive T-lymphocytes expressing dipeptidyl-peptidase IV (CD26) and analysis of the associated cell surface phenotypes
Schubert W, Friedenberger M, Haars R, Bode M, Philipsen L, Nattkemper TW, Ritter H (2002)
Journal of Theoretical Medicine 4(1): 67-74.
PUB | DOI
 
[12]
2002 | Conference Paper | PUB-ID: 1613503
A neural network architecture for automatic segmentation of fluorescence micrographs
Nattkemper TW, Wersing H, Schubert W, Ritter H (2002)
NEUROCOMPUTING 48: 357-367.
PUB | DOI | WoS
 
[11]
2001 | Bielefeld Dissertation | PUB-ID: 2304068
A neural network-based system for high throughput fluorescence micrograph evaluation
Nattkemper TW (2001)
Bielefeld (Germany): Bielefeld University.
PUB | File
 
[10]
2001 | Journal Article | PUB-ID: 1617028
A neural classifier enabling high-throughput topological analysis of lymphocytes in tissue sections
Nattkemper TW, Ritter H, Schubert W (2001)
IEEE TRANSACTIONS ON INFORMATION TECHNOLOGY IN BIOMEDICINE 5(2): 138-149.
PUB | DOI | WoS | PubMed | Europe PMC
 
[9]
2001 | Conference Paper | PUB-ID: 1886493
Combining Independent Component Analysis and Self-organizing Maps for Cell Image Classification
Kämpfe T, Nattkemper TW, Ritter H (2001)
In: Pattern Recognition. Radig B, Florczyk S (Eds); LNCS, 2191. Berlin: Springer: 262-268.
PUB
 
[8]
2001 | Conference Paper | PUB-ID: 2375220
Cell Detection in Micrographs of Tissue Sections Using Support Vector Machines
Twellmann T, Nattkemper TW, Schubert W, Ritter H (2001)
In: Proc. of. ICANN 2001 Workshop on Kernel and Subspace Methods for Computer Vision.
PUB
 
[7]
2000 | Conference Paper | PUB-ID: 2017374
Sonification of Multi-Channel Image Data
Hermann T, Nattkemper TW, Schubert W, Ritter H (2000)
In: Proc. of the Mathematical and Engineering Techniques in Medical and Biological Sciences. Falavar V (Ed); Las Vegas: CSREA Press: 745-750.
PUB | PDF
 
[6]
2000 | Conference Paper | PUB-ID: 2375211
A Neural Network Architecture for Automatic Segmentation of Fluorescence Micrographs
Nattkemper TW, Wersing H, Schubert W, Ritter H (2000)
In: Proc. of the 8th Europ. Symp. on Art. Neur. Netw. (ESANN). Verleysen M (Ed); .
PUB
 
[5]
2000 | Conference Paper | PUB-ID: 2714744
Automatic Evaluation of Multi-Parameter Fluorescence Micrographs with a Neural Network Architecture
Nattkemper TW, Wersing H, Schubert W, Ritter H (2000)
In: Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS '00., 2. Las Vegas, USA: 739-744.
PUB
 
[4]
2000 | Conference Paper | PUB-ID: 2374799
Fluorescence Micrograph Segmentation by Gestalt-Based Feature Binding
Nattkemper TW, Wersing H, Schubert W, Ritter H (2000)
In: Proc. of the Int. Joint Conf. on Neur. Netw. (IJCNN)., 1. Como, Italy: 248-254.
PUB
 
[3]
1999 | Conference Paper | PUB-ID: 2374786
Extracting Patterns of Lymphocyte Fluorescence from Digital Microscope Images
Nattkemper TW, Ritter H, Schubert W (1999)
In: Intelligent Data Analysis in Medicine and Pharmacology (IDAMAP 99), Workshop Notes. AMIA 1999, Washington DC: 79-88.
PUB
 
[2]
1998 | Book Chapter | PUB-ID: 2714985
Farbe und Symmetrie für die datengetriebene Generierung prägnanter Fokuspunkte
Heidemann G, Nattkemper TW, Ritter H (1998)
In: 4. Workshop Farbbildverarbeitung. Rehrmann V (Ed); Koblenzer Schriften zur Informatik, 9. Koblenz: Fölbach: 65-71.
PUB
 
[1]
1996 | Conference Paper | PUB-ID: 2715168
Blicksteuerung durch präattentive Fokussierungspunkte
Heidemann G, Nattkemper TW, Menkhaus G, Ritter H (1996)
In: Aktives Sehen in technischen und biologischen Systemen : Beiträge zum Workshop der GI-Fachgruppe 1.0.4 Bildverstehen, 3. und 4. Dezember 1996, Hamburg. Mertsching B (Ed); Proceedings in artificial intelligence, 4. Sankt Augustin: Infix: 109-116.
PUB
 

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[164]
2017 | Journal Article | PUB-ID: 2911830
ViCAR: An Adaptive and Landmark-Free Registration of Time Lapse Image Data from Microfluidics Experiments
Hattab G, Schlüter J-P, Becker A, Nattkemper TW (2017)
Frontiers in Genetics 8: 69.
PUB | PDF | DOI
 
[163]
2017 | Journal Article | PUB-ID: 2909190
BIIGLE 2.0 - Browsing and Annotating Large Marine Image Collections
Langenkämper D, Zurowietz M, Schoening T, Nattkemper TW (2017)
Frontiers in Marine Science 4: 83.
PUB | Files available | DOI
 
[162]
2017 | Conference Abstract | PUB-ID: 2908753
Extracting Scalar Quantities from Underwater Images - a Toolbox for Image Data from Fixed Observatories.
Osterloff J, Möller T, Nilssen I, Nattkemper TW (2017)
Presented at the Marine Imaging Workshop 2017, Kiel.
PUB | PDF
 
[161]
2016 | Journal Article | PUB-ID: 2905905
Current and future trends in marine image annotation software
Nuno Gomes-Pereira J, Auger V, Beisiegel K, Benjamin R, Bergmann M, Bowden D, Buhl-Mortensen P, De Leo FC, Dionísio G, Durden JM, Edwards L, et al. (2016)
Progress in Oceanography 149: 106-129.
PUB | DOI
 
[160]
2016 | Book Chapter | PUB-ID: 2903653
Perspectives in Visual Imaging for Marine Biology and Ecology: From Acquisition to Understanding
Durden J, Schoening T, Althaus F, Friedmann A, Garica R, Glover AG, Greinert J, Stout NJ, Jones DOB, Jordt A, Kaeli JW, et al. (2016)
In: Oceanography and Marine Biology: An Annual Review. Hughes RN, Hughes DJ, Smith IP, Dale AC (Eds); 54. Boca Raton: CRC Press: 1-72.
PUB | WoS
 
[159]
2016 | Journal Article | PUB-ID: 2907705
Omics Fusion - A Platform for Integrative Analysis of Omics Data
Brink B, Seidel A, Kleinbölting N, Nattkemper TW, Albaum S (2016)
Journal of Integrative Bioinformatics 13(4: SI): 296.
PUB | DOI | WoS | PubMed | Europe PMC
 
[158]
2016 | Conference Paper | PUB-ID: 2906522
Polyp activity estimation and monitoring for cold water corals with a deep learning approach
Osterloff J, Nilssen I, Järnegren J, Buhl-Mortensen P, Nattkemper TW (2016)
In: Proceedigs of CVAUI 2016 (ICPR Workshop).
PUB | DOI
 
[157]
2016 | Conference Paper | PUB-ID: 2903711
Computational Coral Feature Monitoring for the fixed underwater Observatory LoVe
Osterloff J, Nilssen I, Nattkemper TW (2016)
In: Proceedings of IEEE OCEANS 2016.
PUB | DOI
 
[156]
2016 | Journal Article | PUB-ID: 2900943
Comparison of Acceleration Techniques for Selected Low-Level Bioinformatics Operations
Langenkämper D, Jakobi T, Feld D, Jelonek L, Goesmann A, Nattkemper TW (2016)
Frontiers in Genetics 7: 5.
PUB | DOI | WoS | PubMed | Europe PMC
 
[155]
2016 | Journal Article | PUB-ID: 2901413
Spatio-Temporal Metabolite Profiling of the Barley Germination Process by MALDI MS Imaging
Gorzolka K, Kölling J, Nattkemper TW, Niehaus K (2016)
PLOS ONE 11(3): 0150208.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[154]
2016 | Conference Paper | PUB-ID: 2906524
Data-driven Long Term Change Analysis in Marine Observatory Image Streams
Möller T, Nilssen I, Nattkemper TW (Accepted)
In: Proceedings of CVAUI 2016.
PUB
 
[153]
2016 | Journal Article | PUB-ID: 2902750
RecoMIA - Recommendations for marine image annotation: Lessons learned and future directions
Schoening T, Osterloff J, Nattkemper TW (2016)
Frontiers in Marine Science 3: 59.
PUB | PDF | DOI
 
[152]
2016 | Journal Article | PUB-ID: 2903363
Comparison of image annotation data generated by multiple investigators for benthic ecology
Durden JM, Bett BJ, Schoening T, Morris KJ, Ruhl HA, Nattkemper TW (2016)
Marine Ecology Progress Series 552: 61-70.
PUB | DOI | WoS
 
[151]
2016 | Journal Article | PUB-ID: 2903712
Computational Visual Stress Level Analysis of Calcareous Algae Exposed to Sedimentation
Osterloff J, Nilssen I, Eide I, de Oliveira Figueiredo MA, de Souza Tâmega FT, Nattkemper TW (2016)
PLOS ONE 11(6): e0157329.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[150]
2016 | Conference Paper | PUB-ID: 2904670
COATL - A Learning Architecture for Online Real-Time Detection and Classification Assistance for Environmental Data
Langenkämper D, Nattkemper TW (Accepted)
In: Proceedings of the International Conference on Pattern Recognition (ICPR).
PUB
 
[149]
2016 | Conference Paper | PUB-ID: 2904671
Change Detection in Marine Observatory Image Streams using Bi-Domain Feature Clustering
Möller T, Nilssen I, Nattkemper TW (Accepted)
In: Proceedings of the International Conference on Pattern Recognition (ICPR).
PUB
 
[148]
2016 | Journal Article | PUB-ID: 2902857
Fully automated image segmentation for benthic resource assessment of poly-metallic nodules
Schoening T, Kuhn T, Jones DOB, Simon-Lledo E, Nattkemper TW (Accepted)
Methods in Oceanography.
PUB | DOI
 
[147]
2016 | Journal Article | PUB-ID: 2902749 PUB | DOI
 
[146]
2016 | Journal Article | PUB-ID: 2901477
Robust normalization protocols for multiplexed fluorescence bioimage analysis
Ahmed Raza SE, Langenkämper D, Sirinukunwattana K, Epstein D, Nattkemper TW, Rajpoot NM (2016)
BioData Mining 9(1): 11.
PUB | DOI | WoS
 
[145]
2015 | Journal Article | PUB-ID: 2722138
Learning to classify organic and conventional wheat - a machine-learning driven approach using the MeltDB 2.0 metabolomics analysis platform
Kessler N, Bonte A, Albaum S, Mäder P, Messmer M, Goesmann A, Niehaus K, Langenkämper G, Nattkemper TW (2015)
Frontiers in Bioinformatics and Computational Biology 3: 35.
PUB | PDF | DOI
 
[144]
2015 | Conference Paper | PUB-ID: 2775947
Rapid image processing and classification in underwater exploration using advanced high performance computing
Schoening T, Langenkämper D, Steinbrink B, Brün D, Nattkemper TW (In Press)
In: Proc. of the IEEE Oceans. Washington DC, USA: IEEE.
PUB
 
[143]
2015 | Conference Abstract | PUB-ID: 2775956
Integrated Digital Marine Image Analysis and Management - new solutions to handle large image collections in environmental monitoring and exploration
Steinbrink B, Schoening T, Brün D, Nattkemper TW (2015)
Presented at the GEOHAB, Salvador, Brazil.
PUB | PDF
 
[142]
2015 | Journal Article | PUB-ID: 2724431 PUB | PDF | DOI
 
[141]
2015 | Conference Abstract | PUB-ID: 2735538
Computational analysis of spatial species distribution for integrated stationary environmental monitoring
Osterloff J, Nilssen I, Möller T, Nattkemper TW (2015)
Presented at the Geohab 2015, Salvador, Bahia, Brazil.
PUB | PDF
 
[140]
2014 | Conference Paper | PUB-ID: 2683648
Ranking Color Correction Algorithms using Cluster Indices
Osterloff J, Schoening T, Bergmann M, Durden JM, Ruhl HA, Nattkemper TW (2014)
Presented at the ICPR Workshop on Computer Vision for Analysis of Underwater Imagery, Stockhom.
PUB | DOI
 
[139]
2014 | Conference Abstract | PUB-ID: 2690300
Interactive Exploration of Spatial Distribution in Mass Spectrometry Imaging
Kölling J, Zurowietz M, Nattkemper TW (2014)
Presented at the 4th Symposium on Biological Data Visualization (BioVis), Boston, MA, USA.
PUB
 
[138]
2014 | Conference Abstract | PUB-ID: 2690322
Interactive Exploration of Spatial Distribution in Mass Spectrometry Imaging
Kölling J, Zurowietz M, Nattkemper TW (2014)
Presented at the 22nd Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Boston, MA, USA.
PUB
 
[137]
2014 | Journal Article | PUB-ID: 2706029
ALLocator: An Interactive Web Platform for the Analysis of Metabolomic LC-ESI-MS Datasets, Enabling Semi-Automated, User-Revised Compound Annotation and Mass Isotopomer Ratio Analysis
Kessler N, Walter F, Persicke M, Albaum S, Kalinowski J, Goesmann A, Niehaus K, Nattkemper TW (2014)
PLoS ONE 9(11): e113909.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[136]
2014 | Conference Abstract | PUB-ID: 2690436
Spatio-temporal analysis of metabolite profiles during barley germination
Kölling J, Gorzolka K, Niehaus K, Nattkemper TW (In Press)
Presented at the German Conference on Bioinformatics (GCB), Bielefeld, Germany.
PUB | PDF
 
[135]
2014 | Conference Paper | PUB-ID: 2690335
Interactive and dynamic web-based visual exploration of high dimensional bioimages with real time clustering
Rathke M, Kölling J, Gorzolka K, Niehaus K, Nattkemper TW (In Press)
Presented at the German Conference on Bioinformatics (GCB), Bielefeld, Germany.
PUB
 
[134]
2014 | Conference Abstract | PUB-ID: 2775961
Image-based marine resource exploration and biodiversity assessment with MAMAS (Marine data Asset Management and Analysis System)
Schoening T, Brün D, Kuhn T, Nattkemper TW (2014)
Presented at the UMI (Underwater Mining Institute), Lisbon, Portugal.
PUB
 
[133]
2014 | Conference Abstract | PUB-ID: 2901695
German Conference on Bioinformatics 2014
Giegerich R, Hofestädt R, Nattkemper TW (2014) .
PUB
 
[132]
2014 | Journal Article | PUB-ID: 2705712
AKE - The Accelerated k-mer Exploration Web-Tool for Rapid Taxonomic Classification and Visualization
Langenkämper D, Goesmann A, Nattkemper TW (2014)
BMC Bioinformatics 15: 384.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[131]
2014 | Conference Abstract | PUB-ID: 2655889
An overview and rating of benthic image pre-processings for color constancy
Osterloff J, Schoening T, Bergmann M, Nattkemper TW (2014)
Presented at the Marine Imaging Workshop, National Oceanography Centre, Southampton, UK.
PUB
 
[130]
2014 | Conference Paper | PUB-ID: 2717407
Seabed Classification Using a Bag-of-Prototypes Feature Representation
Schoening T, Kuhn T, Nattkemper TW (2014)
In: Computer Vision for Analysis of Underwater Imagery (CVAUI), 2014 ICPR Workshop on. 17-24.
PUB | DOI
 
[129]
2014 | Conference Abstract | PUB-ID: 2676320
Automated Image based Biomass Quantification in Mesocosm Studies
Osterloff J, Nilssen I, de Oliveira Figueiredo MA, de Souza Tâmega FT, Möller T, Nattkemper TW (2014)
Presented at the Geohab 2014, Lorne, Victoria, Australia.
PUB | PDF
 
[128]
2014 | Conference Abstract | PUB-ID: 2676334
Novelty detection in time lapse image data
Möller T, Nilssen I, Sumida PYG, Elbers KL, Nattkemper TW (2014)
Presented at the Geohab 2014, Lorne, Victoria, Australia.
PUB
 
 
[126]
2013 | Conference Paper | PUB-ID: 2538625
Einsatz von Protein- und Metabolit-Profiling-Methoden zur Unterscheidung von ökologischem und konventionellem Weizen
Bonte A, Kessler N, Nattkemper TW, Goesmann A, Cecile T, Mäder P, Niehaus K, Langenkämper G (In Press)
Presented at the 12. Wissenschaftstagung Ökologischer Landbau „Ideal und Wirklichkeit – Perspektiven Ökologischer Landbewirtschaftung“, Bonn, Germany.
PUB
 
[125]
2013 | Journal Article | PUB-ID: 2610129
MeltDB 2.0 - Advances of the metabolomics software system
Kessler N, Bonte A, Langenkämper G, Niehaus K, Goesmann A, Nattkemper TW (2013)
Bioinformatics 29(19): 2452-2459.
PUB | DOI | WoS | PubMed | Europe PMC
 
[124]
2013 | Conference Abstract | PUB-ID: 2656093
Application of Hydro-Acoustic and Video Data for the Exploration of Manganese Nodule Fields
Kuhn T, Rühlemann C, Wiedicke-Hombach M, Schoening T, Nattkemper TW (2013)
Presented at the ISOPE OMS, Szczecin, Poland.
PUB
 
[123]
2013 | Conference Abstract | PUB-ID: 2656054
A machine-learning system for the automated detection of megafauna and its applicability unseen footage
Schoening T, Bergmann M, Nattkemper TW (2013)
Presented at the GEOHAB, Rome.
PUB
 
[122]
2013 | Journal Article | PUB-ID: 2625914
Categorization of two-photon microscopy images of human cartilage into states of osteoarthritis
Bergmann T, Maeder U, Fiebich M, Dickob M, Nattkemper TW, Anselmetti D (2013)
Osteoarthritis And Cartilage 21(8): 1074-1082.
PUB | DOI | WoS | PubMed | Europe PMC
 
[121]
2013 | Journal Article | PUB-ID: 2542584
Approaches to automatic parameter fitting in a microscopy image segmentation pipeline: An exploratory parameter space analysis
Held C, Nattkemper TW, Palmisano R, Wittenberg T (2013)
Journal of Pathology Informatics 4(2): 5.
PUB | DOI | PubMed | Europe PMC
 
[120]
2013 | Journal Article | PUB-ID: 2610505
Microhabitat and shrimp abundance within a Norwegian cold-water coral ecosystem
Purser A, Ontrup J, Schoening T, Thomsen L, Tong R, Unnithan V, Nattkemper TW (2013)
Biogeosciences 10(9): 5779-5791.
PUB | DOI | WoS
 
[119]
2013 | Book Chapter | PUB-ID: 2610762
Cluster Analysis
Nattkemper TW (2013)
In: Encyclopedia of Systems Biology. Dubitzky W, Wolkenhauer O, Cho K-H, Yokota H (Eds); Springer.
PUB
 
[118]
2013 | Conference Paper | PUB-ID: 2610134
Ultra-fast segmentation and quantification of poly-metallic nodule coverage in high-resolution digital images
Schoening T, Steinbrink B, Brün D, Kuhn T, Nattkemper TW (In Press)
In: Proceedings of the UMI 2013.
PUB
 
[117]
2013 | Conference Paper | PUB-ID: 2537912
Using random forest to find Nuclear Export Signals (NESs) in proteins of Arabidopsis thaliana
Rubiano Castellanos CC, Merkle T, Nattkemper TW (In Press)
Presented at the BIOINFORMATICS Conf., Barcelona, Spain.
PUB
 
[116]
2012 | Journal Article | PUB-ID: 2481783
WHIDE - A web tool for visual data mining colocation patterns in multivariate bioimages
Kölling J, Langenkämper D, Sylvie A, Michale K, Nattkemper TW (2012)
Bioinformatics 28(8): 1143-1150.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[115]
2012 | Conference Paper | PUB-ID: 2515687
Analyzing Multi-Tag Bioimages with BIOIMAX colocation mining tools
Kölling J, Rathke M, Abouna S, Khan M, Nattkemper TW (2012)
Presented at the IEEE International Symposium on BIOMEDICAL IMAGING (ISBI), Barcelona.
PUB | PDF
 
[114]
2012 | Conference Abstract | PUB-ID: 2656105
Effects of drill cuttings on a deep water rhodolith bed: an integrated approach
Figueiredo Creed M, Coutinho R, Reynier MV, Cesar Paiva P, Villas AB, Bôas AB, Tapajó s de Souza Tâmega F, Nattkemper TW, Eide I (2012)
Presented at the V International Rhodolith Workshop, Granada, Spain.
PUB
 
[113]
2012 | Conference Abstract | PUB-ID: 2656067
The impact of experts’ inter- and intra-observer agreements on computational object classification in images from the deep seafloor of the HAUSGARTEN observatory.
Schoening T, Bergmann M, Purser A, Gutt J, Dannheim J, Taylor J, Nattkemper TW, Boetius A (2012)
Presented at the 13th International Deep-Sea Biology Symposium, Wellington, New Zealand.
PUB
 
[112]
2012 | Conference Paper | PUB-ID: 2656050
Estimation of poly-metallic nodule coverage in benthic images
Schoening T, Kuhn T, Nattkemper TW (2012)
In: Proc. of the 41st Conference of the Underwater Mining Institute (UMI).
PUB
 
[111]
2012 | Journal Article | PUB-ID: 2455753
RAMTaB: Robust Alignment of Multi-Tag Bioimages
Raza S-E-A, Epstein D, Nattkemper TW, Rajpoot N (2012)
PLoS ONE 7(2): e30894.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[110]
2012 | Conference Paper | PUB-ID: 2515671
Approaches to automatic parameter fitting in a microscopy image segmentation pipeline: An exploratory parameter space analysis
Held C, Nattkemper TW, Wittenberg T (2012)
Presented at the Histopathology Image Analysis (HIMA) workshop at MICCAI 2012, Nizza.
PUB
 
[109]
2012 | Journal Article | PUB-ID: 2536156
Re-Expression of IGF-II Is Important for Beta Cell Regeneration in Adult Mice
Zhou L, Pelengaris S, Abouna S, Young J, Epstein D, Herold J, Nattkemper TW, Nakhai H, Khan M (2012)
PLoS ONE 7(9): e43623.
PUB | DOI | WoS | PubMed | Europe PMC
 
[108]
2012 | Journal Article | PUB-ID: 2498232
Protein turnover quantification in a multi-labeling approach - from data calculation to evaluation
Trötschel C, Albaum S, Wolff D, Schröder S, Goesmann A, Nattkemper TW, Poetsch A (2012)
Molecular & Cellular Proteomics 11(8): 512-526.
PUB | DOI | WoS | PubMed | Europe PMC
 
[107]
2012 | Journal Article | PUB-ID: 2494458
Semi-automated image analysis for the assessment of megafaunal densities at the Arctic deep-sea observatory HAUSGARTEN
Schoening T, Bergmann M, Purser A, Dannheim J, Gutt J, Nattkemper TW (2012)
PLoS ONE 7(6): e38179.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[106]
2012 | Conference Paper | PUB-ID: 2515596
Are we ready for Science 2.0?
Nattkemper TW (In Press)
Presented at the 4th International Conference on Knowledge Management and Information Sharing (KMIS), Barcelona.
PUB | PDF
 
[105]
2012 | Conference Paper | PUB-ID: 2515700
Investigation of hidden parameters influencing the automated object detection in benthic images
Schoening T, Bergmann M, Boetius A, Nattkemper TW (2012)
Presented at the IEEE OCEANS 2012 MTS/IEEE, Hampton Roads, Virginia, USA.
PUB
 
[104]
2011 | Conference Paper | PUB-ID: 2323705
TICAL - a web-tool for multivariate image clustering and data topology preserving visualization
Langenkämper D, Kölling J, Abouna S, Khan M, Niehaus K, Nattkemper TW (2011)
Presented at the Microscopic Image Analysis with Applications in Biology (MIAAB), Heidelberg, Germany.
PUB | PDF
 
[103]
2011 | Conference Paper | PUB-ID: 2300232
A Web2.0 Strategy for the Collaborative Analysis of Complex Bioimages
Loyek C, Kölling J, Langenkämper D, Niehaus K, Nattkemper TW (2011)
In: Advances in Intelligent Data Analysis X: 10th International Symposium, IDA 2011, Porto, Portugal, October 29-31, 2011. Proceedings. Gama J, Bradley E, Hollmén J (Eds); Lecture Notes in Computer Science, 7014. Berlin, Heidelberg: Springer: 258-269.
PUB | PDF | DOI
 
[102]
2011 | Journal Article | PUB-ID: 2300102
Quantification of Cell Infection Caused by Listeria monocytogenes Invasion
Arif M, Rajpoot N, Technow U, Chakraborty T, Fisch N, Jensen NA, Niehaus K, Nattkemper TW (2011)
Journal of Biotechnology 154(1): 76-83.
PUB | DOI | PubMed | Europe PMC
 
[101]
2011 | Journal Article | PUB-ID: 2300114
Web2.0 paves new ways for collaborative and exploratory analysis of Chemical Compounds in Spectrometry Data
Loyek C, Bunkowski A, Vautz W, Nattkemper TW (2011)
Journal of Integrative Bioinformatics 8(2).
PUB | DOI | PubMed | Europe PMC
 
[100]
2011 | Journal Article | PUB-ID: 2300092
Megafaunal assemblages from two shelf stations west of Svalbard
Bergmann M, Langwald N, Ontrup J, Soltwedel T, Schewe I, Klages M, Nattkemper TW (2011)
Marine Biology Research 7(6): 525-539.
PUB | DOI | WoS
 
[99]
2011 | Conference Paper | PUB-ID: 2300235
Towards improved epilepsia diagnosis by unsupervised segmentation of neuropathology tissue sections using Ripley’s-L features
Schoening T, Hans V, Nattkemper TW (2011)
In: Bildverarbeitung für die Medizin 2011:Algorithmen - Systeme - Anwendungen Proceedings des Workshops vom 20. - 22. März 2011 in Lübeck. Informatik aktuell. Berlin, Heidelberg: Springer: 44-48.
PUB | DOI
 
[98]
2011 | Conference Abstract | PUB-ID: 2656082
How to squeeze even more from your Terabytes of video data!
Purser A, Ontrup J, Schoening T, Thomsen L, Unnithan V, Nattkemper TW (2011) .
PUB
 
[97]
2011 | Conference Paper | PUB-ID: 2300237
Towards Protein Network Analysis using TIS Imaging and Exploratory Data Analysis
Langenkämper D, Jan K, Khan M, Rajpoot N, Nattkemper TW (2011)
Presented at the Workshop on Computational Systems Biology (WCSB), Zürich, Switzerland.
PUB | PDF
 
[96]
2011 | Journal Article | PUB-ID: 2300073
A Normalized Tree Index for identification of correlated clinical parameters in microarray data
Martin C, Tauchen A, Becker A, Nattkemper TW (2011)
BioData Mining 4(1): 2.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[95]
2011 | Journal Article | PUB-ID: 2300082
BIOIMAX - A Web 2.0 approach for easy exploratory and collaborative access to multivariate bioimage data
Loyek C, Khan M, Rajpoot N, Nattkemper TW (2011)
BMC Bioinformatics 12(1): 297.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[94]
2011 | Journal Article | PUB-ID: 2300063
A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study
Albaum S, Hahne H, Otto A, Haußmann U, Becher D, Poetsch A, Goesmann A, Nattkemper TW (2011)
Proteome Science 9(1): 30.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[93]
2011 | Conference Paper | PUB-ID: 2315356
Categorization of 2-photon microscopy images of human articular cartilage into states of arthritis
Bergmann T, Fiebich TM, Nattkemper TW, Anselmetti D (In Press)
Presented at the Tagung der Biomedizinischen Technik (BMT), Freiburg, Germany.
PUB
 
[92]
2011 | Journal Article | PUB-ID: 2373808
Multivariate Image Mining
Herold J, Loyek C, Nattkemper TW (2011)
Wiley Interdisciplinary Reviews: DATA MINING AND KNOWLEDGE DISCOVERY 1(1): 2-13.
PUB | DOI | WoS
 
[91]
2011 | Journal Article | PUB-ID: 2093532
Looking inside self-organizing map ensembles with resampling and negative correlation learning
Scherbart A, Nattkemper TW (2011)
Neural Networks 24(1): 130-141.
PUB | DOI | WoS | PubMed | Europe PMC
 
[90]
2010 | Journal Article | PUB-ID: 1929311
BioImaging: Contributions from biology, physics and informatics
Gölzhäuser A, Nattkemper TW, Niehaus K, Pühler A, Sauer M (2010)
Journal of Biotechnology 149(4): 227-228.
PUB | DOI | WoS | PubMed | Europe PMC
 
[89]
2010 | Journal Article | PUB-ID: 1929340
CellViCAM-Cell viability classification for animal cell cultures using dark field micrographs
Burgemeister S, Nattkemper TW, Noll T, Hoffrogge R, Flaschel E (2010)
JOURNAL OF BIOTECHNOLOGY 149(4): 310-316.
PUB | DOI | WoS | PubMed | Europe PMC
 
[88]
2010 | Journal Article | PUB-ID: 1794419
Integrating semantic annotation and information visualization for the analysis of multichannel fluorescence micrographs from pancreatic tissue
Herold J, Zhou L, Abouna S, Pelengaris S, Epstein D, Khan M, Nattkemper TW (2010)
Computerized Medical Imaging and Graphics 34(6): 446-452.
PUB | DOI | WoS | PubMed | Europe PMC
 
[87]
2010 | Journal Article | PUB-ID: 1929335 PUB | DOI | WoS | PubMed | Europe PMC
 
[86]
2009 | Conference Paper | PUB-ID: 1591448
On the application of (topographic) independent and tree-dependent component analysis for the examination of DCE-MRI data
Saalbach A, Lange O, Nattkemper TW, Meyer-Baese A (2009)
BIOMEDICAL SIGNAL PROCESSING AND CONTROL 4(3): 247-253.
PUB | DOI | WoS | PubMed | Europe PMC
 
[85]
2009 | Journal Article | PUB-ID: 1588783
Use of machine-learning algorithms for the automated detection of cold-water coral habitats: a pilot study
Purser A, Bergmann M, Ontrup J, Nattkemper TW (2009)
Marine Ecology Progress Series 397: 241-251.
PUB | DOI | WoS
 
[84]
2009 | Journal Article | PUB-ID: 1635314
TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach
Diaz NN, Krause L, Goesmann A, Niehaus K, Nattkemper TW (2009)
BMC Bioinformatics 10(1): 56.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[83]
2009 | Conference Paper | PUB-ID: 2018422
BIIGLE - Web 2.0 enabled labelling and exploring of images from the Arctic deep-sea observatory HAUSGARTEN
Ontrup J, Ehnert N, Bergmann M, Nattkemper TW (2009)
In: OCEANS 2009 - Europe. Bremen.
PUB | DOI
 
[82]
2009 | Journal Article | PUB-ID: 1589531
Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments
Albaum S, Neuweger H, Fraenzel B, Lange S, Mertens D, Troetschel C, Wolters D, Kalinowski J, Nattkemper TW, Goesmann A (2009)
Bioinformatics 25(23): 3128-3134.
PUB | DOI | WoS | PubMed | Europe PMC
 
[81]
2009 | Conference Paper | PUB-ID: 2018440
BIIGLE Tools - A Web 2.0 Approach for Visual Bioimage Database Mining
Schoening T, Ehnert N, Ontrup J, Nattkemper TW (2009)
In: IV 09 - Intl. Conference on Information Visualization.
PUB | DOI
 
[80]
2009 | Conference Paper | PUB-ID: 2018427
A Robust Adaptive Wavelet-based Method for Classification of Meningioma Histology Images
Qureshi H, Rajpoot N, Nattkemper TW, Hans V (2009)
In: MICCAI«2009 Workshop on Optical Tissue Image Analysis in Microscopy, Histology, and Endoscopy.
PUB
 
[79]
2009 | Conference Paper | PUB-ID: 2018390
A way towards analyzing high-content bioimage data by means of semantic annotation and visual data mining
Herold J, Abouna S, Zhou L, Pelengaris S, Epstein DBA, Khan M, Nattkemper TW (2009)
In: SPIE Medical Imaging.
PUB | DOI
 
[78]
2008 | Journal Article | PUB-ID: 1783364
Phylogenetic classification of short environmental DNA fragments
Krause L, Diaz NN, Goesmann A, Kelley S, Nattkemper TW, Rohwer F, Edwards RA, Stoye J (2008)
Nucleic Acids Research 36(7): 2230-2239.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[77]
2008 | Conference Paper | PUB-ID: 2018409
A Tree Index to Support Clustering Based Exploratory Data Analysis
Martin C, Nattkemper TW (2008)
In: Bioinformatics Research and Development : Second International Conference, BIRD 2008 Vienna, Austria, July 7-9, 2008 Proceedings. Communications in Computer and Information Science, 13. Berlin, Heidelberg: Springer: 1-15.
PUB | DOI
 
[76]
2008 | Journal Article | PUB-ID: 1585611 PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[75]
2008 | Journal Article | PUB-ID: 1636280
Peak intensity prediction in MALDI-TOF mass spectrometry: A machine learning study to support quantitative proteomics
Timm W, Scherbart A, Boecker S, Kohlbacher O, Nattkemper TW (2008)
BMC Bioinformatics 9(1): 443.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[74]
2008 | Conference Paper | PUB-ID: 2018381
ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract)
Albaum S, Neuweger H, Lange S, Mertens D, Runte K, Kalinowski J, Nattkemper TW, Goesmann A (2008)
In: HUPO 7th Annual World Congress.
PUB
 
[73]
2008 | Conference Paper | PUB-ID: 2018405
Detection of Focal Cortical Dysplasia in MRI Using Textural Features
Loyek C, Woermann FG, Nattkemper TW (2008)
In: Proceedings of BVM 2008. Berlin, Heidelberg: Springer Verlag: 432-436.
PUB | DOI
 
[72]
2008 | Journal Article | PUB-ID: 1630738
Identification of genes relevant to symbiosis and competitiveness in Sinorhizobium meliloti using signature-tagged mutants
Pobigaylo N, Szymczak S, Nattkemper TW, Becker A (2008)
MOLECULAR PLANT-MICROBE INTERACTIONS 21(2): 219-231.
PUB | DOI | WoS | PubMed | Europe PMC
 
[71]
2008 | Conference Paper | PUB-ID: 2018435
Improved Mass Spectrometry Peak Intensity Prediction by Adaptive Feature Weighting
Scherbart A, Timm W, Böcker S, Nattkemper TW (2008)
In: International Conference on Neural Information Processing. Auckland, New Zealand.
PUB | DOI
 
[70]
2008 | Conference Paper | PUB-ID: 2018398
Flexible Synapse Detection in Fluorescence Micrographs by Modeling Human Expert Grading
Herold J, Friedenberger M, Bode M, Rajpoot N, Schubert W, Nattkemper TW (2008)
In: Proc. of 2008 IEEE International Symposium on Biomedical Imaging.
PUB | DOI
 
[69]
2008 | Conference Paper | PUB-ID: 2018432
The Diversity of Regression Ensembles Combining Bagging and Random Subspace Method
Scherbart A, Nattkemper TW (2008)
In: International Conference on Neural Information Processing.
PUB | DOI
 
[68]
2008 | Journal Article | PUB-ID: 1588286
Model-free visualization of suspicious lesions in breast MRI based on supervised and unsupervised learning
Twellmann T, Meyer-Baese A, Lange O, Foo S, Nattkemper TW (2008)
ENGINEERING APPLICATIONS OF ARTIFICIAL INTELLIGENCE 21(2): 129-140.
PUB | DOI | WoS | PubMed | Europe PMC
 
[67]
2008 | Journal Article | PUB-ID: 1587052
Hyperbolic SOM-based clustering of DNA fragment features for taxonomic visualization and classification
Martin C, Diaz NN, Ontrup J, Nattkemper TW (2008)
Bioinformatics 24(14): 1568-1574.
PUB | DOI | WoS | PubMed | Europe PMC
 
[66]
2007 | Journal Article | PUB-ID: 1593120 PUB | DOI | WoS | PubMed | Europe PMC
 
[65]
2007 | Journal Article | PUB-ID: 1783345
GISMO - gene identification using a support vector machine for ORF classification
Krause L, McHardy AC, Nattkemper TW, Pühler A, Stoye J, Meyer F (2007)
Nucleic Acids Research 35(2): 540-549.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
[64]
2007 | Book Chapter | PUB-ID: 2714021
Breast Tumor Classification and Visualization with Machine-Learning Approaches
Nattkemper TW, Degenhard A, Twellmann T (2007)
In: Cancer Imaging - Lung and breast carcinomas. Hayat MA (Ed); , 1. Academic Press: 309-321.
PUB
 
[63]
2007 | Book Chapter | PUB-ID: 2714040
Neural Network Approach for Mass Spectrometry Prediction by Peptide Prototyping
Scherbart A, Timm W, Boecker S, Nattkemper TW (2007)
In: Artificial Neural Networks – ICANN 2007 - 17th International Conference, Porto, Portugal, September 9-13, 2007, Proceedings, Part II. Sá de JM (Ed); Lecture Notes in Computer Science, 4669. Berlin: Springer: 90-99.
PUB | DOI
 
[62]
2007 | Conference Abstract | PUB-ID: 2714002
Use of automated image analysis to detect changes in megafaunal densities at HAUSGARTEN (79°N west off Svalbard) between 2002 and 2004
Lessmann B, Wang Y, Bergmann M, Kämpfe T, Nattkemper TW (2007)
Presented at the EMBS - 42nd European Marine Biology Symposium, Kiel, Germany.
PUB
 
[61]
2007 | Journal Article | PUB-ID: 2714032
Multiscale Analysis of MR Mammography Data
Lessmann B, Nattkemper TW, Kessar P, Pointon L, Khazen M, Leach MO, Degenhard A (2007)
Zeitschrift für Medizinische Physik (german journal of medical physics) 17(3): 166-171.
PUB
 
[60]
2007 | Conference Paper | PUB-ID: 2714045
SOM-based Peptide Prototyping for Mass Spectrometry Peak Intensity Prediction
Scherbart A, Timm W, Boecker S, Nattkemper TW (2007)
In: Proceedings of the 6th Workshop on Self-Organizing Maps (WSOM 07). Bielefeld, Germany.
PUB | DOI
 
[59]
2007 | Journal Article | PUB-ID: 1595739
In situ dark field microscopy for on-line monitoring of yeast cultures
Wei N, You J, Friehs K, Flaschel E, Nattkemper TW (2007)
BIOTECHNOLOGY LETTERS 29(3): 373-378.
PUB | DOI | WoS | PubMed | Europe PMC
 
[58]
2007 | Book Chapter | PUB-ID: 2018416
Breas
Nattkemper TW, Degenhard A, Twellmann T (2007)
In: Cancer Imaging - Lung and breast carcinomas. Hayat MA (Ed); , 1. Academic Press: 309-324.
PUB
 
[57]
2007 | Conference Paper | PUB-ID: 2018412
Genome feature exploration using hyperbolic Self-Organizing Maps
Martin C, Díaz Solórzano NN, Ontrup J, Nattkemper TW (2007)
In: WSOM.
PUB
 
[56]
2007 | Journal Article | PUB-ID: 1588474
Multiscale analysis of MR-mammography
Lessmann B, Nattkemper TW, Kessar P, Pointon L, Khazen M, Leach MO, Degenhard A (2007)
ZEITSCHRIFT FUR MEDIZINISCHE PHYSIK 17(3): 166-171.
PUB | DOI | WoS | PubMed | Europe PMC
 
[55]
2007 | Journal Article | PUB-ID: 1630749
A method for linking computed image features to histological semantics in neuropathology
Lessmann B, Nattkemper TW, Hans VH, Degenhard A (2007)
Journal of Biomedical Informatics 40(6): 631-641.
PUB | DOI | WoS | PubMed | Europe PMC
 
[54]
2006 | Journal Article | PUB-ID: 1598535
ISOLLE: LLE with geodesic distance
Varini C, Degenhard A, Nattkemper TW (2006)
NEUROCOMPUTING 69(13-15): 1768-1771.
PUB | DOI | WoS
 
[53]
2006 | Journal Article | PUB-ID: 1596731
Visual exploratory analysis of DCE-MRI data in breast cancer by dimensional data reduction: A comparative study
Varini C, Degenhard A, Nattkemper TW (2006)
BIOMEDICAL SIGNAL PROCESSING AND CONTROL 1(1): 56-63.
PUB | DOI | WoS
 
[52]
2006 | Journal Article | PUB-ID: 1598838
Construction of a large signature-tagged mini-Tn5 transposon library and its application to mutagenesis of Sinorhizobium meliloti
Pobigaylo N, Wetter D, Szymczak S, Schiller U, Kurtz S, Meyer F, Nattkemper TW, Becker A (2006)
APPLIED AND ENVIRONMENTAL MICROBIOLOGY 72(6): 4329-4337.
PUB | DOI | WoS | PubMed | Europe PMC
 
[51]
2006 | Conference Paper | PUB-ID: 2714065
Histologic Characterization of DCE-MRI Tumors with Dimensional Data Reduction
Varini C, Degenhard A, Nattkemper TW (2006)
In: Medical Imaging 2006: Image Processing. Proceedings of SPIE, 6144. San Diego, CA: SPIE.
PUB | DOI
 
[50]
2006 | Conference Paper | PUB-ID: 2714060
Feature space exploration of pathology images using Content-Based Database Visualization
Lessmann B, Hans V, Degenhard A, Nattkemper TW (2006)
In: Medical Imaging 2006: Image Processing. Proceedings of SPIE, 6144. San Diego, CA: SPIE.
PUB | DOI
 
[49]
2006 | Conference Paper | PUB-ID: 2714148
Visualizations of Suspicious Lesions in Breast MRI Based on Intelligent Neural Systems
Twellmann T, Lange O, Nattkemper TW, Meyer A (2006)
In: Intelligent Computing: Theory and Applications IV. Proceedings of SPIE, 6229. San Diego, CA: SPIE.
PUB | DOI
 
[48]
2006 | Journal Article | PUB-ID: 2714075 PUB
 
[47]
2006 | Conference Paper | PUB-ID: 2374232
Visual Exploration of Pathology Images by a Discrete Wavelet Transform Preprocessed Locally Linear Embedding.
Varini C, Lessmann B, Degenhard A, Hans VH, Nattkemper TW (2006)
In: Bildverarbeitung für die Medizin. Handels H, Ehrhardt J, Horsch A, Meinzer H-P, Tolxdorff T (Eds); Springer: 66-70.
PUB
 
[46]
2006 | Conference Paper | PUB-ID: 2374494
Peak intensity prediction for pmf mass spectra using support vector regression
Timm W, Böcker S, Twellmann T, Nattkemper TW (2006)
In: Proc. of the 7th International FLINS Conference on Applied Artificial Intelligence. 565-572.
PUB | DOI
 
[45]
2006 | Conference Paper | PUB-ID: 2374254
Content Based Image Retrieval for Dynamic Time Series Data
Lessmann B, Nattkemper TW, Huth J, Loyek C, Kessar P, Khazen M, Pointon L, Leach MO, Degenhard A (2006)
In: Proceedings of BVM. 61-65.
PUB
 
[44]
2006 | Conference Paper | PUB-ID: 1597259
Fusing biomedical multi-modal data for exploratory data analysis
Martin C, Deters H grosse, Nattkemper TW (2006)
In: ARTIFICIAL NEURAL NETWORKS - ICANN 2006, PT 2., 4132. SPRINGER-VERLAG BERLIN: 798-807.
PUB | DOI | WoS
 
[43]
2006 | Journal Article | PUB-ID: 1600329
A rapid reporter system using GFP as a reporter protein for identification and screening of synthetic stationary-phase promoters in Escherichia coli
Miksch G, Bettenworth F, Friehs K, Flaschel E, Saalbach A, Nattkemper TW (2006)
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 70(2): 229-236.
PUB | DOI | WoS | PubMed | Europe PMC
 
[42]
2005 | Conference Paper | PUB-ID: 1601906
SOM-based wavelet filtering for the exploration of medical images
Lessmann B, Degenhard A, Kessar P, Pointon L, Khazen M, Leach MO, Nattkemper TW (2005)
In: ARTIFICIAL NEURAL NETWORKS: BIOLOGICAL INSPIRATIONS - ICANN 2005, PT 1, PROCEEDINGS., 3696. SPRINGER-VERLAG BERLIN: 671-676.
PUB | DOI | WoS
 
[41]
2005 | Journal Article | PUB-ID: 1603560
Evaluation of radiological features for breast tumour classification in clinical screening with machine learning methods
Nattkemper TW, Arnrich B, Lichte O, Timm W, Degenhard A, Pointon L, Hayes C, Leach MO (2005)
ARTIFICIAL INTELLIGENCE IN MEDICINE 34(2): 129-139.
PUB | DOI | WoS | PubMed | Europe PMC
 
[40]
2005 | Book | PUB-ID: 2714309
An Online Monitoring System for the Screening of Stationary-Phase Promoters in E. Coli using GFP as a Reporter Protein
Bettenworth F, Miksch G, Fries K, Flaschel E, Saalbach A, Eickmeyer J, Nattkemper TW (2005) .
PUB
 
[39]
2005 | Conference Paper | PUB-ID: 2714331
Spectral Clustering for Data Categorization based on Self-Organizing Maps
Saalbach A, Twellmann T, Nattkemper TW (2005)
In: Applications of Neural Networks and Machine Learning in Image Processing IX. Nasser M. N (Ed); , 5673. San Jose, CA: 12-18.
PUB
 
[38]
2005 | Conference Paper | PUB-ID: 2714153
Clustering approach for wavelet transformed MR image data
Lessmann B, Nattkemper TW, Degenhard A, Pointon L, Kessar P, Khazen M, Leach MO (2005)
In: Proceedings of the 14th International Conference of Medical Physics. 1412.
PUB
 
[37]
2005 | Journal Article | PUB-ID: 2714263
An Adaptive Tissue Characterisation Network for Model-Free Visualisation of Dynamic Contrast-Enhanced Magnetic Resonance Image Data
Twellmann T, Lichte O, Nattkemper TW (2005)
IEEE Transactions on Medical Imaging 24(10): 1256-1266.
PUB | DOI | WoS | PubMed | Europe PMC
 
[36]
2005 | Journal Article | PUB-ID: 2714340
Tumour feature analysis with unsupervised machine learning
Nattkemper TW, Wismüller A (2005)
Medical Image Analysis 9(4): 344-351.
PUB | DOI | WoS | PubMed | Europe PMC
 
[35]
2005 | Journal Article | PUB-ID: 2374187
Image fusion based on topographic mappings using the hyperbolic space
Saalbach A, Ontrup J, Ritter H, Nattkemper TW (2005)
Information Visualization 4(4): 266-275.
PUB | DOI
 
[34]
2005 | Conference Paper | PUB-ID: 2374666
An Adaptive Colour Scale for Comparison of Pseudo Colouring Techniques for DCE-MRI Data
Twellmann T, Lichte O, Saalbach A, Wismüller A, Nattkemper TW (2005)
Presented at the Workshop für Bildverarbeiteung für die Medzin.
PUB
 
[33]
2005 | Conference Paper | PUB-ID: 2374546
A hyperbolic topographic mapping for proximity data
Saalbach A, Twellmann T, Nattkemper TW, Wismüller A, Ontrup J, Ritter H (2005)
In: Proc. of the IASTED International Conference of Artificial Intelligence and Applications., 2005. 106-111.
PUB
 
[32]
2005 | Journal Article | PUB-ID: 1946602
Reagent-free automatic cell viability determination using neural networks based machine vision and dark-field microscopy in Saccharomyces cerevisiae
Wei N, Flaschel E, Saalbach A, Twellmann T, Nattkemper TW (2005)
Conf Proc IEEE Eng Med Biol Soc 6.
PUB | DOI | PubMed | Europe PMC
 
[31]
2005 | Conference Paper | PUB-ID: 1601519
ISOLLE: Locally linear embedding with geodesic distance
Varini C, Degenhard A, Nattkemper TW (2005)
In: KNOWLEDGE DISCOVERY IN DATABASES: PKDD 2005., 3721. SPRINGER-VERLAG BERLIN: 331-342.
PUB | DOI | WoS
 
[30]
2005 | Journal Article | PUB-ID: 1602177
An adaptive tissue characterization network for model-free visualization of dynamic contrast-enhanced magnetic resonance image data
Twellmann T, Lichte O, Nattkemper TW (2005)
IEEE TRANSACTIONS ON MEDICAL IMAGING 24(10): 1256-1266.
PUB | DOI | WoS | PubMed | Europe PMC
 
[29]
2005 | Conference Paper | PUB-ID: 1601848
Libraries of synthetic stationary-phase and stress promoters as a tool for fine-tuning of expression of recombinant proteins in Escherichia coli
Miksch G, Bettenworth F, Friehs K, Flaschel E, Saalbach A, Twellmann T, Nattkemper TW (2005)
JOURNAL OF BIOTECHNOLOGY 120(1): 25-37.
PUB | DOI | WoS | PubMed | Europe PMC
 
[28]
2005 | Journal Article | PUB-ID: 1603030
Tumor feature visualization with unsupervised learning
Nattkemper TW, Wismuller A (2005)
MEDICAL IMAGE ANALYSIS 9(4): 344-351.
PUB | DOI | WoS | PubMed | Europe PMC
 
[27]
2005 | Journal Article | PUB-ID: 1602344
Machine learning approaches for phenotype-genotype mapping: predicting heterozygous mutations in the CYP21B gene from steroid profiles
Prank K, Schulze E, Eckert O, Nattkemper TW, Bettendorf M, Maser-Gluth C, Sejnowski TJ, Grote A, Penner E, von zur Muhlen A, Brabant G (2005)
EUROPEAN JOURNAL OF ENDOCRINOLOGY 153(2): 301-305.
PUB | DOI | WoS | PubMed | Europe PMC
 
[26]
2004 | Conference Paper | PUB-ID: 2017550
A Hybrid System for Cell Detection in Digital Micrographs
Nattkemper TW, Schubert W, Hermann T, Ritter H (2004)
In: Biomedical Engineering, Proc. Tilg B (Ed); , 417. Innsbruck, Austria: ACTA Press.
PUB | PDF
 
[25]
2004 | Conference Paper | PUB-ID: 2714369
Breast MRI data analysis by LLE
Varini C, Nattkemper TW, Degenhard A, Wismüller A (2004)
In: Proceedings of International Joint Conference on Neural Networks., 3. Montreal, Canada: IEEE: 2449-2554.
PUB | DOI
 
[24]
2004 | Conference Paper | PUB-ID: 2714382
Visualization of Multivariate Image Data using Image Fusion and Perceptually Optimized Color Scales based on sRGB
Saalbach A, Twellmann T, Nattkemper TW, White MJ, Khazen M, Leach MO (2004)
In: Medical Imaging 2004: Visualization, Image-Guided Procedures, and Display. Robert L. Galloway J (Ed); Proceedings of SPIE, 5367. San Diego, CA: SPIE.
PUB | DOI
 
[23]
2004 | Conference Paper | PUB-ID: 2714346
Wavelet features for improved tumour detection in DCE-MRI
Lessmann B, Twellmann T, Degenhard A, Nattkemper TW, Leach MO (2004)
In: Proceedings of Medical Image Understanding and Analysis (MIUA). Rueckert D, Hajnal J, Yang G-Z (Eds); London, UK: BMVA: 93-96.
PUB
 
[22]
2004 | Journal Article | PUB-ID: 2714465
Multivariate image analysis in biomedicine: a methodological review
Nattkemper TW (2004)
Journal of Biomedical Informatics 37(5): 380-391.
PUB
 
[21]
2004 | Conference Paper | PUB-ID: 2714397
AQUISAR: Image Retrieval in Underwater Webcam Images
Kämpfe T, Nattkemper TW, Ritter H (2004)
In: WIAMIS 2004 : 5th International Workshop on Image Analysis for Multimedia Interactive Services. Lisboa, Portugal.
PUB
 
[20]
2004 | Journal Article | PUB-ID: 1666510
Image fusion for dynamic contrast enhanced magnetic resonance imaging
Twellmann T, Saalbach A, Gerstung O, Leach MO, Nattkemper TW (2004)
Biomed Eng Online 3(1): 35.
PUB | PDF | DOI | PubMed | Europe PMC
 
[19]
2004 | Conference Paper | PUB-ID: 2375262
Visualisation of Breast Tumour DCE-MRI Data using LLE
Varini C, Nattkemper TW, Degenhard A, Wismüller A (2004)
In: Proc. Medical Image Understanding and Analysis (MIUA). BMVA: 97-100.
PUB
 
[18]
2004 | Journal Article | PUB-ID: 1606041
Multivariate image analysis in biomedicine
Nattkemper TW (2004)
JOURNAL OF BIOMEDICAL INFORMATICS 37(5): 380-391.
PUB | DOI | WoS | PubMed | Europe PMC
 
[17]
2003 | Journal Article | PUB-ID: 1612741
Human vs. machine: evaluation of fluorescence micrographs
Nattkemper TW, Twellmann T, Ritter H, Schubert W (2003)
Computers in Biology and Medicine 33(1): 31-43.
PUB | DOI | WoS | PubMed | Europe PMC
 
[16]
2003 | Conference Paper | PUB-ID: 2017545
Look & Listen: Sonification and Visualization of Multiparameter Micrographs
Nattkemper TW, Hermann T, Schubert W, Ritter H (2003)
In: Engineering in Medicine and Biology Society. Proceedings of the 25th Annual International Conference of the IEEE., 2. Cancun, Mexico: IEEE: 1311-1314.
PUB | PDF
 
[15]
2003 | Conference Paper | PUB-ID: 2714496
A MeSH Term based Distance Measure for Document Retrieval and Labeling Assistance
Ontrup J, Nattkemper TW, Gerstung O, Ritter H (2003)
In: Proc. of EMBC2003. Cancun, Mexico: IEEE EMBS.
PUB
 
[14]
2003 | Conference Paper | PUB-ID: 2714487
Artificial Neural Networks Machine Learning Approaches for Multivariate Image Analysis
Twellmann T, Saalbach A, Nattkemper TW, Ritter H (2003)
In: Proceedings Linking mathematical and biological models in cancer research. Magdeburg.
PUB
 
[13]
2002 | Journal Article | PUB-ID: 1886441
Automatic recognition of muscle invasive T-lymphocytes expressing dipeptidyl-peptidase IV (CD26) and analysis of the associated cell surface phenotypes
Schubert W, Friedenberger M, Haars R, Bode M, Philipsen L, Nattkemper TW, Ritter H (2002)
Journal of Theoretical Medicine 4(1): 67-74.
PUB | DOI
 
[12]
2002 | Conference Paper | PUB-ID: 1613503
A neural network architecture for automatic segmentation of fluorescence micrographs
Nattkemper TW, Wersing H, Schubert W, Ritter H (2002)
NEUROCOMPUTING 48: 357-367.
PUB | DOI | WoS
 
[11]
2001 | Bielefeld Dissertation | PUB-ID: 2304068
A neural network-based system for high throughput fluorescence micrograph evaluation
Nattkemper TW (2001)
Bielefeld (Germany): Bielefeld University.
PUB | File
 
[10]
2001 | Journal Article | PUB-ID: 1617028
A neural classifier enabling high-throughput topological analysis of lymphocytes in tissue sections
Nattkemper TW, Ritter H, Schubert W (2001)
IEEE TRANSACTIONS ON INFORMATION TECHNOLOGY IN BIOMEDICINE 5(2): 138-149.
PUB | DOI | WoS | PubMed | Europe PMC
 
[9]
2001 | Conference Paper | PUB-ID: 1886493
Combining Independent Component Analysis and Self-organizing Maps for Cell Image Classification
Kämpfe T, Nattkemper TW, Ritter H (2001)
In: Pattern Recognition. Radig B, Florczyk S (Eds); LNCS, 2191. Berlin: Springer: 262-268.
PUB
 
[8]
2001 | Conference Paper | PUB-ID: 2375220
Cell Detection in Micrographs of Tissue Sections Using Support Vector Machines
Twellmann T, Nattkemper TW, Schubert W, Ritter H (2001)
In: Proc. of. ICANN 2001 Workshop on Kernel and Subspace Methods for Computer Vision.
PUB
 
[7]
2000 | Conference Paper | PUB-ID: 2017374
Sonification of Multi-Channel Image Data
Hermann T, Nattkemper TW, Schubert W, Ritter H (2000)
In: Proc. of the Mathematical and Engineering Techniques in Medical and Biological Sciences. Falavar V (Ed); Las Vegas: CSREA Press: 745-750.
PUB | PDF
 
[6]
2000 | Conference Paper | PUB-ID: 2375211
A Neural Network Architecture for Automatic Segmentation of Fluorescence Micrographs
Nattkemper TW, Wersing H, Schubert W, Ritter H (2000)
In: Proc. of the 8th Europ. Symp. on Art. Neur. Netw. (ESANN). Verleysen M (Ed); .
PUB
 
[5]
2000 | Conference Paper | PUB-ID: 2714744
Automatic Evaluation of Multi-Parameter Fluorescence Micrographs with a Neural Network Architecture
Nattkemper TW, Wersing H, Schubert W, Ritter H (2000)
In: Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS '00., 2. Las Vegas, USA: 739-744.
PUB
 
[4]
2000 | Conference Paper | PUB-ID: 2374799
Fluorescence Micrograph Segmentation by Gestalt-Based Feature Binding
Nattkemper TW, Wersing H, Schubert W, Ritter H (2000)
In: Proc. of the Int. Joint Conf. on Neur. Netw. (IJCNN)., 1. Como, Italy: 248-254.
PUB
 
[3]
1999 | Conference Paper | PUB-ID: 2374786
Extracting Patterns of Lymphocyte Fluorescence from Digital Microscope Images
Nattkemper TW, Ritter H, Schubert W (1999)
In: Intelligent Data Analysis in Medicine and Pharmacology (IDAMAP 99), Workshop Notes. AMIA 1999, Washington DC: 79-88.
PUB
 
[2]
1998 | Book Chapter | PUB-ID: 2714985
Farbe und Symmetrie für die datengetriebene Generierung prägnanter Fokuspunkte
Heidemann G, Nattkemper TW, Ritter H (1998)
In: 4. Workshop Farbbildverarbeitung. Rehrmann V (Ed); Koblenzer Schriften zur Informatik, 9. Koblenz: Fölbach: 65-71.
PUB
 
[1]
1996 | Conference Paper | PUB-ID: 2715168
Blicksteuerung durch präattentive Fokussierungspunkte
Heidemann G, Nattkemper TW, Menkhaus G, Ritter H (1996)
In: Aktives Sehen in technischen und biologischen Systemen : Beiträge zum Workshop der GI-Fachgruppe 1.0.4 Bildverstehen, 3. und 4. Dezember 1996, Hamburg. Mertsching B (Ed); Proceedings in artificial intelligence, 4. Sankt Augustin: Infix: 109-116.
PUB
 

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