KnotInFrame: prediction of –1 ribosomal frameshift events

Theis C, Reeder J, Giegerich R (2008)
Nucleic Acids Research 36(18): 6013-6020.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
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DOI
URN
urn:nbn:de:0070-pub-17833575
Autor*in
Theis, Corinna; Reeder, Jens; Giegerich, RobertUniBi
Einrichtung
Centrum für Biotechnologie > Institut für Bioinformatik
Centrum für Biotechnologie > Arbeitsgruppe R. Giegerich
Technische Fakultät > AG Praktische Informatik
Abstract / Bemerkung
Programmed –1 ribosomal frameshift (–1 PRF) allows for alternative reading frames within one mRNA. First found in several viruses, it is now believed to exist in all kingdoms of life. Strong stimulators for –1 PRF are a heptameric slippery site and an RNA pseudoknot. Here, we present a new algorithm KnotInFrame, for the automatic detection of –1 PRF signals from genomic sequences. It finds the frameshifting stimulators by means of a specialized RNA-pseudoknot folding program, fast enough for genome-wide analyses. Evaluations on known –1 PRF signals demonstrate a high sensitivity.
Erscheinungsjahr
2008
Zeitschriftentitel
Nucleic Acids Research
Band
36
Ausgabe
18
Seite(n)
6013-6020
ISSN
0305-1048
eISSN
1362-4962
Page URI
https://pub.uni-bielefeld.de/record/1783357

Zitieren

Theis C, Reeder J, Giegerich R. KnotInFrame: prediction of –1 ribosomal frameshift events. Nucleic Acids Research. 2008;36(18):6013-6020.
Theis, C., Reeder, J., & Giegerich, R. (2008). KnotInFrame: prediction of –1 ribosomal frameshift events. Nucleic Acids Research, 36(18), 6013-6020. https://doi.org/10.1093/nar/gkn578
Theis, Corinna, Reeder, Jens, and Giegerich, Robert. 2008. “KnotInFrame: prediction of –1 ribosomal frameshift events”. Nucleic Acids Research 36 (18): 6013-6020.
Theis, C., Reeder, J., and Giegerich, R. (2008). KnotInFrame: prediction of –1 ribosomal frameshift events. Nucleic Acids Research 36, 6013-6020.
Theis, C., Reeder, J., & Giegerich, R., 2008. KnotInFrame: prediction of –1 ribosomal frameshift events. Nucleic Acids Research, 36(18), p 6013-6020.
C. Theis, J. Reeder, and R. Giegerich, “KnotInFrame: prediction of –1 ribosomal frameshift events”, Nucleic Acids Research, vol. 36, 2008, pp. 6013-6020.
Theis, C., Reeder, J., Giegerich, R.: KnotInFrame: prediction of –1 ribosomal frameshift events. Nucleic Acids Research. 36, 6013-6020 (2008).
Theis, Corinna, Reeder, Jens, and Giegerich, Robert. “KnotInFrame: prediction of –1 ribosomal frameshift events”. Nucleic Acids Research 36.18 (2008): 6013-6020.
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