RNAhybrid: microRNA target prediction easy, fast and flexible

Krüger J, Rehmsmeier M (2006)
Nucleic Acids Research 34(Web Server): W451-W454.

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Abstract / Bemerkung
In the elucidation of the microRNA regulatory network, knowledge of potential targets is of highest importance. Among existing target prediction methods, RNAhybrid [ M. Rehmsmeier, P. Steffen, M. Hochsmann and R. Giegerich ( 2004) RNA, 10, 1507 - 1517] is unique in offering a flexible online prediction. Recently, some useful features have been added, among these the possibility to disallow G: U base pairs in the seed region, and a seed- match speed- up, which accelerates the program by a factor of 8. In addition, the program can now be used as a webservice for remote calls from user-implemented programs. We demonstrate RNAhybrid's flexibility with the prediction of a non- canonical target site for Caenorhabditis elegans miR- 241 in the 30- untranslated region of lin-39. RNAhybrid is available at http://bibiserv.techfak.uni-bielefeld.de/rnahybrid.
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Nucleic Acids Research
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34
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Web Server
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W451-W454
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Krüger J, Rehmsmeier M. RNAhybrid: microRNA target prediction easy, fast and flexible. Nucleic Acids Research. 2006;34(Web Server):W451-W454.
Krüger, J., & Rehmsmeier, M. (2006). RNAhybrid: microRNA target prediction easy, fast and flexible. Nucleic Acids Research, 34(Web Server), W451-W454. doi:10.1093/nar/gkl243
Krüger, J., and Rehmsmeier, M. (2006). RNAhybrid: microRNA target prediction easy, fast and flexible. Nucleic Acids Research 34, W451-W454.
Krüger, J., & Rehmsmeier, M., 2006. RNAhybrid: microRNA target prediction easy, fast and flexible. Nucleic Acids Research, 34(Web Server), p W451-W454.
J. Krüger and M. Rehmsmeier, “RNAhybrid: microRNA target prediction easy, fast and flexible”, Nucleic Acids Research, vol. 34, 2006, pp. W451-W454.
Krüger, J., Rehmsmeier, M.: RNAhybrid: microRNA target prediction easy, fast and flexible. Nucleic Acids Research. 34, W451-W454 (2006).
Krüger, Jan, and Rehmsmeier, Marc. “RNAhybrid: microRNA target prediction easy, fast and flexible”. Nucleic Acids Research 34.Web Server (2006): W451-W454.
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2019-09-06T08:48:09Z

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Analysis of sucrose-induced small RNAs in Streptococcus mutans in the presence of different sucrose concentrations.
Liu SS, Zhu WH, Zhi QH, Liu J, Wang Y, Lin HC., Appl Microbiol Biotechnol 101(14), 2017
PMID: 28567481
MicroRNAs control mRNA fate by compartmentalization based on 3' UTR length in male germ cells.
Zhang Y, Tang C, Yu T, Zhang R, Zheng H, Yan W., Genome Biol 18(1), 2017
PMID: 28615029
Post-transcriptional regulation of ERBB2 by miR26a/b and HuR confers resistance to tamoxifen in estrogen receptor-positive breast cancer cells.
Tan S, Ding K, Chong QY, Zhao J, Liu Y, Shao Y, Zhang Y, Yu Q, Xiong Z, Zhang W, Zhang M, Li G, Li X, Kong X, Ahmad A, Wu Z, Wu Q, Zhao X, Lobie PE, Zhu T., J Biol Chem 292(33), 2017
PMID: 28637868
A non-canonical site reveals the cooperative mechanisms of microRNA-mediated silencing.
Flamand MN, Gan HH, Mayya VK, Gunsalus KC, Duchaine TF., Nucleic Acids Res 45(12), 2017
PMID: 28482037
Zika virus alters the microRNA expression profile and elicits an RNAi response in Aedes aegypti mosquitoes.
Saldaña MA, Etebari K, Hart CE, Widen SG, Wood TG, Thangamani S, Asgari S, Hughes GL., PLoS Negl Trop Dis 11(7), 2017
PMID: 28715413
Genome reconstruction in Cynara cardunculus taxa gains access to chromosome-scale DNA variation.
Acquadro A, Barchi L, Portis E, Mangino G, Valentino D, Mauromicale G, Lanteri S., Sci Rep 7(1), 2017
PMID: 28717205
MicroRNA-4639 Is a Regulator of DJ-1 Expression and a Potential Early Diagnostic Marker for Parkinson's Disease.
Chen Y, Gao C, Sun Q, Pan H, Huang P, Ding J, Chen S., Front Aging Neurosci 9(), 2017
PMID: 28785216
SmithRNAs: Could Mitochondria "Bend" Nuclear Regulation?
Pozzi A, Plazzi F, Milani L, Ghiselli F, Passamonti M., Mol Biol Evol 34(8), 2017
PMID: 28444389
Loss of a mammalian circular RNA locus causes miRNA deregulation and affects brain function.
Piwecka M, Glažar P, Hernandez-Miranda LR, Memczak S, Wolf SA, Rybak-Wolf A, Filipchyk A, Klironomos F, Cerda Jara CA, Fenske P, Trimbuch T, Zywitza V, Plass M, Schreyer L, Ayoub S, Kocks C, Kühn R, Rosenmund C, Birchmeier C, Rajewsky N., Science 357(6357), 2017
PMID: 28798046
Global mapping of miRNA-target interactions in cattle (Bos taurus).
Scheel TKH, Moore MJ, Luna JM, Nishiuchi E, Fak J, Darnell RB, Rice CM., Sci Rep 7(1), 2017
PMID: 28811507
MicroRNA expression profiling of porcine mammary epithelial cells after challenge with Escherichia coli in vitro.
Jaeger A, Hadlich F, Kemper N, Lübke-Becker A, Muráni E, Wimmers K, Ponsuksili S., BMC Genomics 18(1), 2017
PMID: 28836962
5'-UTR and 3'-UTR Regulation of MICB Expression in Human Cancer Cells by Novel microRNAs.
Wongfieng W, Jumnainsong A, Chamgramol Y, Sripa B, Leelayuwat C., Genes (Basel) 8(9), 2017
PMID: 28850101
Plant microRNAs in larval food regulate honeybee caste development.
Zhu K, Liu M, Fu Z, Zhou Z, Kong Y, Liang H, Lin Z, Luo J, Zheng H, Wan P, Zhang J, Zen K, Chen J, Hu F, Zhang CY, Ren J, Chen X., PLoS Genet 13(8), 2017
PMID: 28859085
The downregulation of putative anticancer target BORIS/CTCFL in an addicted myeloid cancer cell line modulates the expression of multiple protein coding and ncRNA genes.
Teplyakov E, Wu Q, Liu J, Pugacheva EM, Loukinov D, Boukaba A, Lobanenkov V, Strunnikov A., Oncotarget 8(43), 2017
PMID: 29088719
Impact of microRNA-34a and polymorphism of its target gene CA9 on susceptibility to uterine cervical cancer.
Yang SF, Liu YF, Cheng CW, Yang WE, Lin WL, Ko JL, Wang PH., Oncotarget 8(44), 2017
PMID: 29100431
Identification of circular RNA in the Bombyx mori silk gland.
Gan H, Feng T, Wu Y, Liu C, Xia Q, Cheng T., Insect Biochem Mol Biol 89(), 2017
PMID: 28918159
MicroRNAs in Taenia solium Neurocysticercosis: Insights as Promising Agents in Host-Parasite Interaction and Their Potential as Biomarkers.
Gutierrez-Loli R, Orrego MA, Sevillano-Quispe OG, Herrera-Arrasco L, Guerra-Giraldez C., Front Microbiol 8(), 2017
PMID: 29033926
miR-200b downregulates Kruppel Like Factor 2 (KLF2) during acute hypoxia in human endothelial cells.
Bartoszewski R, Serocki M, Janaszak-Jasiecka A, Bartoszewska S, Kochan-Jamrozy K, Piotrowski A, Króliczewski J, Collawn JF., Eur J Cell Biol 96(8), 2017
PMID: 29042072
miR-1 suppresses the proliferation and promotes the apoptosis of esophageal carcinoma cells by targeting Src.
Liao Z, Wang X, Liang H, Yu A, Ur Rehman U, Fan Q, Hu Y, Wang C, Zhou Z, Wang T., Cancer Med 6(12), 2017
PMID: 29034995
Computational tools for plant small RNA detection and categorization.
Morgado L, Johannes F., Brief Bioinform (), 2017
PMID: 29059285
Identification and Characterization of MicroRNAs in the Goat (Capra hircus) Rumen during Embryonic Development.
Zhong T, Hu J, Xiao P, Zhan S, Wang L, Guo J, Li L, Zhang H, Niu L., Front Genet 8(), 2017
PMID: 29123545
Transcriptomic profiling in human mesangial cells using patient-derived lupus autoantibodies identified miR-10a as a potential regulator of IL8.
Tangtanatakul P, Thammasate B, Jacquet A, Reantragoon R, Pisitkun T, Avihingsanon Y, Leelahavanichkul A, Hirankarn N., Sci Rep 7(1), 2017
PMID: 29109423
Global Transcriptome Analysis of Aedes aegypti Mosquitoes in Response to Zika Virus Infection.
Etebari K, Hegde S, Saldaña MA, Widen SG, Wood TG, Asgari S, Hughes GL., mSphere 2(6), 2017
PMID: 29202041
MicroRNAs regulate the sesquiterpenoid hormonal pathway in Drosophila and other arthropods.
Qu Z, Bendena WG, Nong W, Siggens KW, Noriega FG, Kai ZP, Zang YY, Koon AC, Chan HYE, Chan TF, Chu KH, Lam HM, Akam M, Tobe SS, Lam Hui JH., Proc Biol Sci 284(1869), 2017
PMID: 29237851
MicroRNA-497-5p Suppresses Tumor Cell Growth of Osteosarcoma by Targeting ADP Ribosylation Factor-Like Protein 2.
Sun Z, Li A, Yu Z, Li X, Guo X, Chen R., Cancer Biother Radiopharm 32(10), 2017
PMID: 29265919
Mycobacterium tuberculosis Modulates miR-106b-5p to Control Cathepsin S Expression Resulting in Higher Pathogen Survival and Poor T-Cell Activation.
Pires D, Bernard EM, Pombo JP, Carmo N, Fialho C, Gutierrez MG, Bettencourt P, Anes E., Front Immunol 8(), 2017
PMID: 29326705
Similarity computation strategies in the microRNA-disease network: a survey.
Zou Q, Li J, Song L, Zeng X, Wang G., Brief Funct Genomics 15(1), 2016
PMID: 26134276
DynaMIT: the dynamic motif integration toolkit.
Dassi E, Quattrone A., Nucleic Acids Res 44(1), 2016
PMID: 26253738
MicroRNA-138 Inhibits Periodontal Progenitor Differentiation under Inflammatory Conditions.
Zhou X, Luan X, Chen Z, Francis M, Gopinathan G, Li W, Lu X, Li S, Wu C, Diekwisch TG., J Dent Res 95(2), 2016
PMID: 26518300
Analysis of miRNA expression profiling in mouse spleen affected by acute Toxoplasma gondii infection.
He JJ, Ma J, Wang JL, Xu MJ, Zhu XQ., Infect Genet Evol 37(), 2016
PMID: 26569573
MicroRNAs: exploring new horizons in osteoarthritis.
Nugent M., Osteoarthritis Cartilage 24(4), 2016
PMID: 26576510
Bioinformatic tools for microRNA dissection.
Akhtar MM, Micolucci L, Islam MS, Olivieri F, Procopio AD., Nucleic Acids Res 44(1), 2016
PMID: 26578605
MiRTDL: A Deep Learning Approach for miRNA Target Prediction.
Shuang Cheng, Maozu Guo, Chunyu Wang, Xiaoyan Liu, Yang Liu, Xuejian Wu., IEEE/ACM Trans Comput Biol Bioinform 13(6), 2016
PMID: 28055894
LDL accelerates monocyte to macrophage differentiation: Effects on adhesion and anoikis.
Escate R, Padro T, Badimon L., Atherosclerosis 246(), 2016
PMID: 26800307
Integrated analysis of microRNA regulatory network in nasopharyngeal carcinoma with deep sequencing.
Wang F, Lu J, Peng X, Wang J, Liu X, Chen X, Jiang Y, Li X, Zhang B., J Exp Clin Cancer Res 35(), 2016
PMID: 26795575
A Temperature Sensitive Variant of p53 Drives p53-Dependent MicroRNA Expression without Evidence of Widespread Post-Transcriptional Gene Silencing.
Cabrita MA, Vanzyl EJ, Hamill JD, Pan E, Marcellus KA, Tolls VJ, Alonzi RC, Pastic A, Rambo TM, Sayed H, McKay BC., PLoS One 11(2), 2016
PMID: 26840126
MicroRNA signatures characterizing caste-independent ovarian activity in queen and worker honeybees (Apis mellifera L.).
Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs MD, Cristino AS, Pinheiro DG, Simões ZL., Insect Mol Biol 25(3), 2016
PMID: 26853694
Identification of differentially expressed miRNAs in individual breast cancer patient and application in personalized medicine.
Peng F, Zhang Y, Wang R, Zhou W, Zhao Z, Liang H, Qi L, Zhao W, Wang H, Wang C, Guo Z, Gu Y., Oncogenesis 5(), 2016
PMID: 26878388
SRAMP: prediction of mammalian N6-methyladenosine (m6A) sites based on sequence-derived features.
Zhou Y, Zeng P, Li YH, Zhang Z, Cui Q., Nucleic Acids Res 44(10), 2016
PMID: 26896799
miR-429 regulates the transition between Hypoxia-Inducible Factor (HIF)1A and HIF3A expression in human endothelial cells.
Janaszak-Jasiecka A, Bartoszewska S, Kochan K, Piotrowski A, Kalinowski L, Kamysz W, Ochocka RJ, Bartoszewski R, Collawn JF., Sci Rep 6(), 2016
PMID: 26954587
Mycobacterium bovis BCG Interferes with miR-3619-5p Control of Cathepsin S in the Process of Autophagy.
Pawar K, Sharbati J, Einspanier R, Sharbati S., Front Cell Infect Microbiol 6(), 2016
PMID: 27014637
CCAR1 5' UTR as a natural miRancer of miR-1254 overrides tamoxifen resistance.
Li G, Wu X, Qian W, Cai H, Sun X, Zhang W, Tan S, Wu Z, Qian P, Ding K, Lu X, Zhang X, Yan H, Song H, Guang S, Wu Q, Lobie PE, Shan G, Zhu T., Cell Res 26(6), 2016
PMID: 27002217
Long non-coding RNA containing ultraconserved genomic region 8 promotes bladder cancer tumorigenesis.
Olivieri M, Ferro M, Terreri S, Durso M, Romanelli A, Avitabile C, De Cobelli O, Messere A, Bruzzese D, Vannini I, Marinelli L, Novellino E, Zhang W, Incoronato M, Ilardi G, Staibano S, Marra L, Franco R, Perdonà S, Terracciano D, Czerniak B, Liguori GL, Colonna V, Fabbri M, Febbraio F, Calin GA, Cimmino A., Oncotarget 7(15), 2016
PMID: 26943042
ChemiRs: a web application for microRNAs and chemicals.
Su EC, Chen YS, Tien YC, Liu J, Ho BC, Yu SL, Singh S., BMC Bioinformatics 17(), 2016
PMID: 27091357
Web-based tools for microRNAs involved in human cancer.
Mar-Aguilar F, Rodríguez-Padilla C, Reséndez-Pérez D., Oncol Lett 11(6), 2016
PMID: 27284356
Circulating microRNA profiles of Ebola virus infection.
Duy J, Koehler JW, Honko AN, Schoepp RJ, Wauquier N, Gonzalez JP, Pitt ML, Mucker EM, Johnson JC, O'Hearn A, Bangura J, Coomber M, Minogue TD., Sci Rep 6(), 2016
PMID: 27098369
NEAT1 is Required for Survival of Breast Cancer Cells Through FUS and miR-548.
Ke H, Zhao L, Feng X, Xu H, Zou L, Yang Q, Su X, Peng L, Jiao B., Gene Regul Syst Bio 10(suppl 1), 2016
PMID: 27147820
Differential expression of conserved and novel microRNAs during tail regeneration in the lizard Anolis carolinensis.
Hutchins ED, Eckalbar WL, Wolter JM, Mangone M, Kusumi K., BMC Genomics 17(), 2016
PMID: 27150582
Hsa-miR-24-3p increases nasopharyngeal carcinoma radiosensitivity by targeting both the 3'UTR and 5'UTR of Jab1/CSN5.
Wang S, Pan Y, Zhang R, Xu T, Wu W, Zhang R, Wang C, Huang H, Calin CA, Yang H, Claret FX., Oncogene 35(47), 2016
PMID: 27157611
miARma-Seq: a comprehensive tool for miRNA, mRNA and circRNA analysis.
Andrés-León E, Núñez-Torres R, Rojas AM., Sci Rep 6(), 2016
PMID: 27167008
DeAnnIso: a tool for online detection and annotation of isomiRs from small RNA sequencing data.
Zhang Y, Zang Q, Zhang H, Ban R, Yang Y, Iqbal F, Li A, Shi Q., Nucleic Acids Res 44(w1), 2016
PMID: 27179030
TarPmiR: a new approach for microRNA target site prediction.
Ding J, Li X, Hu H., Bioinformatics 32(18), 2016
PMID: 27207945
Association of a let-7 miRNA binding region of TGFBR1 with hereditary mismatch repair proficient colorectal cancer (MSS HNPCC).
Xicola RM, Bontu S, Doyle BJ, Rawson J, Garre P, Lee E, de la Hoya M, Bessa X, Clofent J, Bujanda L, Balaguer F, Castellví-Bel S, Alenda C, Jover R, Ruiz-Ponte C, Syngal S, Andreu M, Carracedo A, Castells A, Newcomb PA, Lindor N, Potter JD, Baron JA, Ellis NA, Caldes T, LLor X., Carcinogenesis 37(8), 2016
PMID: 27234654
Identification of associations between small molecule drugs and miRNAs based on functional similarity.
Wang J, Meng F, Dai E, Yang F, Wang S, Chen X, Yang L, Wang Y, Jiang W., Oncotarget 7(25), 2016
PMID: 27232942
Comprehensive analysis of high-throughput screens with HiTSeekR.
List M, Schmidt S, Christiansen H, Rehmsmeier M, Tan Q, Mollenhauer J, Baumbach J., Nucleic Acids Res 44(14), 2016
PMID: 27330136
Genetic variants within microRNA-binding site of RAD51B are associated with risk of cervical cancer in Chinese women.
Hang D, Zhou W, Jia M, Wang L, Zhou J, Yin Y, Ma H, Hu Z, Li N, Shen H., Cancer Med 5(9), 2016
PMID: 27334422
miR-638 suppresses DNA damage repair by targeting SMC1A expression in terminally differentiated cells.
He M, Lin Y, Tang Y, Liu Y, Zhou W, Li C, Sun G, Guo M., Aging (Albany NY) 8(7), 2016
PMID: 27405111
miR-9 Acts as an OncomiR in Prostate Cancer through Multiple Pathways That Drive Tumour Progression and Metastasis.
Seashols-Williams SJ, Budd W, Clark GC, Wu Q, Daniel R, Dragoescu E, Zehner ZE., PLoS One 11(7), 2016
PMID: 27447934
Deep sequencing reveals global patterns of mRNA recruitment during translation initiation.
Gao R, Yu K, Nie J, Lian T, Jin J, Liljas A, Su XD., Sci Rep 6(), 2016
PMID: 27460773
MicroRNA-mRNA regulatory networking fine-tunes the porcine muscle fiber type, muscular mitochondrial respiratory and metabolic enzyme activities.
Liu X, Trakooljul N, Hadlich F, Muráni E, Wimmers K, Ponsuksili S., BMC Genomics 17(), 2016
PMID: 27485725
microRNA-309 targets the Homeobox gene SIX4 and controls ovarian development in the mosquito Aedes aegypti.
Zhang Y, Zhao B, Roy S, Saha TT, Kokoza VA, Li M, Raikhel AS., Proc Natl Acad Sci U S A 113(33), 2016
PMID: 27489347
In silico dissection of miRNA targetome polymorphisms and their role in regulating miRNA-mediated gene expression in esophageal cancer.
Nariman-Saleh-Fam Z, Bastami M, Somi MH, Samadi N, Abbaszadegan MR, Behjati F, Ghaedi H, Tavakkoly-Bazzaz J, Masotti A., Cell Biochem Biophys 74(4), 2016
PMID: 27518186
BDE47 induces rat CYP3A1 by targeting the transcriptional regulation of miR-23b.
Sun Z, Zhang Z, Ji M, Yang H, Cromie M, Gu J, Wang C, Yang L, Yu Y, Gao W, Wang SL., Sci Rep 6(), 2016
PMID: 27546062
Development of Insulin Resistance through Induction of miRNA-135 in C2C12 Cells.
Honardoost M, Arefian E, Soleimani M, Soudi S, Sarookhani MR., Cell J 18(3), 2016
PMID: 27602317
MicroRNA-21 regulates prostaglandin E2 signaling pathway by targeting 15-hydroxyprostaglandin dehydrogenase in tongue squamous cell carcinoma.
He Q, Chen Z, Dong Q, Zhang L, Chen D, Patel A, Koya A, Luan X, Cabay RJ, Dai Y, Wang A, Zhou X., BMC Cancer 16(1), 2016
PMID: 27561985
Ago-RIP-Seq identifies Polycomb repressive complex I member CBX7 as a major target of miR-375 in prostate cancer progression.
Pickl JM, Tichy D, Kuryshev VY, Tolstov Y, Falkenstein M, Schüler J, Reidenbach D, Hotz-Wagenblatt A, Kristiansen G, Roth W, Hadaschik B, Hohenfellner M, Duensing S, Heckmann D, Sültmann H., Oncotarget 7(37), 2016
PMID: 27449098
Computational identification and characterization of novel microRNA in the mammary gland of dairy goat (Capra hircus).
Qu B, Qiu Y, Zhen Z, Zhao F, Wang C, Cui Y, Li Q, Zhang L., J Genet 95(3), 2016
PMID: 27659334
SpermBase: A Database for Sperm-Borne RNA Contents.
Schuster A, Tang C, Xie Y, Ortogero N, Yuan S, Yan W., Biol Reprod 95(5), 2016
PMID: 27628216
Prediction of Host-Derived miRNAs with the Potential to Target PVY in Potato Plants.
Iqbal MS, Hafeez MN, Wattoo JI, Ali A, Sharif MN, Rashid B, Tabassum B, Nasir IA., Front Genet 7(), 2016
PMID: 27683585
MicroRNA-137 Inhibits EFNB2 Expression Affected by a Genetic Variant and Is Expressed Aberrantly in Peripheral Blood of Schizophrenia Patients.
Wu S, Zhang R, Nie F, Wang X, Jiang C, Liu M, Valenzuela RK, Liu W, Shi Y, Ma J., EBioMedicine 12(), 2016
PMID: 27650867
MiRNATIP: a SOM-based miRNA-target interactions predictor.
Fiannaca A, Rosa M, Paglia L, Rizzo R, Urso A., BMC Bioinformatics 17(suppl 11), 2016
PMID: 28185545
MiR-154 directly suppresses DKK2 to activate Wnt signaling pathway and enhance activation of cardiac fibroblasts.
Sun LY, Bie ZD, Zhang CH, Li H, Li LD, Yang J., Cell Biol Int 40(12), 2016
PMID: 27542661
MicroRNA expression signatures in lungs of mice infected with Mycobacterium tuberculosis.
Malardo T, Gardinassi LG, Moreira BP, Padilha É, Lorenzi JC, Soares LS, Gembre AF, Fontoura IC, de Almeida LP, de Miranda Santos IK, Silva CL, Coelho-Castelo AA., Tuberculosis (Edinb) 101(), 2016
PMID: 27865387
MicroRNAs in the Host Response to Viral Infections of Veterinary Importance.
Samir M, Vaas LA, Pessler F., Front Vet Sci 3(), 2016
PMID: 27800484
MicroRNA-424 impairs ubiquitination to activate STAT3 and promote prostate tumor progression.
Dallavalle C, Albino D, Civenni G, Merulla J, Ostano P, Mello-Grand M, Rossi S, Losa M, D'Ambrosio G, Sessa F, Thalmann GN, Garcia-Escudero R, Zitella A, Chiorino G, Catapano CV, Carbone GM., J Clin Invest 126(12), 2016
PMID: 27820701
Iron Homeostasis Regulates the Genotoxicity of Escherichia coli That Produces Colibactin.
Tronnet S, Garcie C, Rehm N, Dobrindt U, Oswald E, Martin P., Infect Immun 84(12), 2016
PMID: 27620723
Aire Downregulation Is Associated with Changes in the Posttranscriptional Control of Peripheral Tissue Antigens in Medullary Thymic Epithelial Cells.
Oliveira EH, Macedo C, Collares CV, Freitas AC, Donate PB, Sakamoto-Hojo ET, Donadi EA, Passos GA., Front Immunol 7(), 2016
PMID: 27933063
The microRNA toolkit of insects.
Ylla G, Fromm B, Piulachs MD, Belles X., Sci Rep 6(), 2016
PMID: 27883064
MicroRNAs modulate adaption to multiple abiotic stresses in Chlamydomonas reinhardtii.
Gao X, Zhang F, Hu J, Cai W, Shan G, Dai D, Huang K, Wang G., Sci Rep 6(), 2016
PMID: 27910907
Tools for Sequence-Based miRNA Target Prediction: What to Choose?
Riffo-Campos ÁL, Riquelme I, Brebi-Mieville P., Int J Mol Sci 17(12), 2016
PMID: 27941681
Transcription factor and microRNA co-regulatory loops: important regulatory motifs in biological processes and diseases.
Zhang HM, Kuang S, Xiong X, Gao T, Liu C, Guo AY., Brief Bioinform 16(1), 2015
PMID: 24307685
Honeysuckle-encoded atypical microRNA2911 directly targets influenza A viruses.
Zhou Z, Li X, Liu J, Dong L, Chen Q, Liu J, Kong H, Zhang Q, Qi X, Hou D, Zhang L, Zhang G, Liu Y, Zhang Y, Li J, Wang J, Chen X, Wang H, Zhang J, Chen H, Zen K, Zhang CY., Cell Res 25(1), 2015
PMID: 25287280
Human L-DOPA decarboxylase mRNA is a target of miR-145: A prediction to validation workflow.
Papadopoulos EI, Fragoulis EG, Scorilas A., Gene 554(2), 2015
PMID: 25445287
Identification of a functional SNP in the 3'UTR of CXCR2 that is associated with reduced risk of lung cancer.
Ryan BM, Robles AI, McClary AC, Haznadar M, Bowman ED, Pine SR, Brown D, Khan M, Shiraishi K, Kohno T, Okayama H, Modali R, Yokota J, Harris CC., Cancer Res 75(3), 2015
PMID: 25480945
Alteration of the miRNA expression profile in male porcine anterior pituitary cells in response to GHRH and CST and analysis of the potential roles for miRNAs in regulating GH.
Qi QE, Xi QY, Ye RS, Chen T, Cheng X, Li CY, Zhu XT, Shu G, Wang LN, Jiang QY, Zhang YL., Growth Horm IGF Res 25(2), 2015
PMID: 25613666
HDAC inhibitors target HDAC5, upregulate microRNA-125a-5p, and induce apoptosis in breast cancer cells.
Hsieh TH, Hsu CY, Tsai CF, Long CY, Wu CH, Wu DC, Lee JN, Chang WC, Tsai EM., Mol Ther 23(4), 2015
PMID: 25531695
The hypoxia-inducible miR-429 regulates hypoxia-inducible factor-1α expression in human endothelial cells through a negative feedback loop.
Bartoszewska S, Kochan K, Piotrowski A, Kamysz W, Ochocka RJ, Collawn JF, Bartoszewski R., FASEB J 29(4), 2015
PMID: 25550463
An assessment of bacterial small RNA target prediction programs.
Pain A, Ott A, Amine H, Rochat T, Bouloc P, Gautheret D., RNA Biol 12(5), 2015
PMID: 25760244
Bioinformatics Resources for MicroRNA Discovery.
Moore AC, Winkjer JS, Tseng TT., Biomark Insights 10(suppl 4), 2015
PMID: 26819547
MicroRNA-8 targets the Wingless signaling pathway in the female mosquito fat body to regulate reproductive processes.
Lucas KJ, Roy S, Ha J, Gervaise AL, Kokoza VA, Raikhel AS., Proc Natl Acad Sci U S A 112(5), 2015
PMID: 25605933
A complex genome-microRNA interplay in human mitochondria.
Shinde S, Bhadra U., Biomed Res Int 2015(), 2015
PMID: 25695052
Identifying microRNAs involved in cancer pathway using support vector machines.
Kothandan R, Biswas S., Comput Biol Chem 55(), 2015
PMID: 25677919
Detecting key genes regulated by miRNAs in dysfunctional crosstalk pathway of myasthenia gravis.
Cao Y, Wang J, Zhang H, Tian Q, Chen L, Ning S, Liu P, Sun X, Lu X, Song C, Zhang S, Xiao B, Wang L., Biomed Res Int 2015(), 2015
PMID: 25705681
Properties and kinetics of microRNA regulation through canonical seed sites.
Chen JS, Revilla AC, Guerrero M, Gumbayan AM, Zeller RW., J RNAi Gene Silencing 11(), 2015
PMID: 25870651
MicroRNA regulation of central glial cell line-derived neurotrophic factor (GDNF) signalling in depression.
Maheu M, Lopez JP, Crapper L, Davoli MA, Turecki G, Mechawar N., Transl Psychiatry 5(), 2015
PMID: 25689572
Identification and characteristics of microRNAs from army worm, Spodoptera frugiperda cell line Sf21.
Kakumani PK, Chinnappan M, Singh AK, Malhotra P, Mukherjee SK, Bhatnagar RK., PLoS One 10(2), 2015
PMID: 25693181
Model-guided quantitative analysis of microRNA-mediated regulation on competing endogenous RNAs using a synthetic gene circuit.
Yuan Y, Liu B, Xie P, Zhang MQ, Li Y, Xie Z, Wang X., Proc Natl Acad Sci U S A 112(10), 2015
PMID: 25713348
MicroRNAs and drought responses in sugarcane.
Gentile A, Dias LI, Mattos RS, Ferreira TH, Menossi M., Front Plant Sci 6(), 2015
PMID: 25755657
A hairpin within YAP mRNA 3'UTR functions in regulation at post-transcription level.
Gao Y, Wang Y, Feng J, Feng G, Zheng M, Yang Z, Xiao Z, Lu Z, Ye L, Zhang X., Biochem Biophys Res Commun 459(2), 2015
PMID: 25727017
Dynamics of gene expression patterns during early development of the European seabass (Dicentrarchus labrax).
Kaitetzidou E, Xiang J, Antonopoulou E, Tsigenopoulos CS, Sarropoulou E., Physiol Genomics 47(5), 2015
PMID: 25736025
MicroRNAome in decidua: a new approach to assess the maintenance of pregnancy.
Wang Y, Lv Y, Wang L, Gong C, Sun J, Chen X, Chen Y, Yang L, Zhang Y, Yang X, Bai C, Wei Z, Li G., Fertil Steril 103(4), 2015
PMID: 25747134
Heme oxygenase-1 modulates microRNA expression in cultured astroglia: implications for chronic brain disorders.
Lin SH, Song W, Cressatti M, Zukor H, Wang E, Schipper HM., Glia 63(7), 2015
PMID: 25820186
Dynamic expression of miRNAs across immature and adult stages of the malaria mosquito Anopheles stephensi.
Jain S, Rana V, Tridibes A, Sunil S, Bhatnagar RK., Parasit Vectors 8(), 2015
PMID: 25888742
Hcmv-miR-UL22A-5p: A Biomarker in Transplantation With Broad Impact on Host Gene Expression and Potential Immunological Implications.
Lisboa LF, Egli A, O'Shea D, Åsberg A, Hartmann A, Rollag H, Pang XL, Tyrrell DL, Kumar D, Humar A., Am J Transplant 15(7), 2015
PMID: 25833298
miRGate: a curated database of human, mouse and rat miRNA-mRNA targets.
Andrés-León E, González Peña D, Gómez-López G, Pisano DG., Database (Oxford) 2015(), 2015
PMID: 25858286
HIF-inducible miR-191 promotes migration in breast cancer through complex regulation of TGFβ-signaling in hypoxic microenvironment.
Nagpal N, Ahmad HM, Chameettachal S, Sundar D, Ghosh S, Kulshreshtha R., Sci Rep 5(), 2015
PMID: 25867965
MicroRNA-765 influences arterial stiffness through modulating apelin expression.
Liao YC, Wang YS, Hsi E, Chang MH, You YZ, Juo SH., Mol Cell Endocrinol 411(), 2015
PMID: 25882991
Micro RNA-124a regulates lipolysis via adipose triglyceride lipase and comparative gene identification 58.
Das SK, Stadelmeyer E, Schauer S, Schwarz A, Strohmaier H, Claudel T, Zechner R, Hoefler G, Vesely PW., Int J Mol Sci 16(4), 2015
PMID: 25894224
MicroRNA-128 targets myostatin at coding domain sequence to regulate myoblasts in skeletal muscle development.
Shi L, Zhou B, Li P, Schinckel AP, Liang T, Wang H, Li H, Fu L, Chu Q, Huang R., Cell Signal 27(9), 2015
PMID: 25958325
MicroRNAs Regulate Cellular ATP Levels by Targeting Mitochondrial Energy Metabolism Genes during C2C12 Myoblast Differentiation.
Siengdee P, Trakooljul N, Murani E, Schwerin M, Wimmers K, Ponsuksili S., PLoS One 10(5), 2015
PMID: 26010876
Analysis of miRNA, mRNA, and TF interactions through network-based methods.
Guzzi PH, Di Martino MT, Tagliaferri P, Tassone P, Cannataro M., EURASIP J Bioinform Syst Biol 2015(), 2015
PMID: 28194173
Comparative Profiling of MicroRNAs in Male and Female Rhipicephalus sanguineus.
Shao CC, Xu MJ, Chen YZ, Tao JP, Zhu XQ., Appl Biochem Biotechnol 176(7), 2015
PMID: 26054615
A post-transcriptional mechanism pacing expression of neural genes with precursor cell differentiation status.
Dai W, Li W, Hoque M, Li Z, Tian B, Makeyev EV., Nat Commun 6(), 2015
PMID: 26144867
Deep sequencing analysis of microRNA expression in human melanocyte and melanoma cell lines.
Ding N, Wang S, Yang Q, Li Y, Cheng H, Wang J, Wang D, Deng Y, Yang Y, Hu S, Zhao H, Fang X., Gene 572(1), 2015
PMID: 26164755
Post-Transcriptional Regulation of Renalase Gene by miR-29 and miR-146 MicroRNAs: Implications for Cardiometabolic Disorders.
Kalyani A, Sonawane PJ, Khan AA, Subramanian L, Ehret GB, Mullasari AS, Mahapatra NR., J Mol Biol 427(16), 2015
PMID: 26165231
MicroRNA, Pm-miR-2305, Participates in Nacre Formation by Targeting Pearlin in Pearl Oyster Pinctada martensii.
Jiao Y, Zheng Z, Tian R, Du X, Wang Q, Huang R., Int J Mol Sci 16(9), 2015
PMID: 26370972
Expression Change of miR-214 and miR-135 during Muscle Differentiation.
Honardoost M, Soleimani M, Arefian E, Sarookhani MR., Cell J 17(3), 2015
PMID: 26464817
Small RNAs in Plant Responses to Abiotic Stresses: Regulatory Roles and Study Methods.
Ku YS, Wong JW, Mui Z, Liu X, Hui JH, Chan TF, Lam HM., Int J Mol Sci 16(10), 2015
PMID: 26501263
Dual Action of miR-125b As a Tumor Suppressor and OncomiR-22 Promotes Prostate Cancer Tumorigenesis.
Budd WT, Seashols-Williams SJ, Clark GC, Weaver D, Calvert V, Petricoin E, Dragoescu EA, O'Hanlon K, Zehner ZE., PLoS One 10(11), 2015
PMID: 26544868
miRNA⁻mRNA Conflux Regulating Immunity and Oxidative Stress Pathways in the Midgut of Blood-Fed Anopheles stephensi.
Jain S, Shrinet J, Tridibes A, Bhatnagar RK, Sunil S., Noncoding RNA 1(3), 2015
PMID: 29861425
MatPred: Computational Identification of Mature MicroRNAs within Novel Pre-MicroRNAs.
Li J, Wang Y, Wang L, Feng W, Luan K, Dai X, Xu C, Meng X, Zhang Q, Liang H., Biomed Res Int 2015(), 2015
PMID: 26682221
miRNA-target chimeras reveal miRNA 3'-end pairing as a major determinant of Argonaute target specificity.
Moore MJ, Scheel TK, Luna JM, Park CY, Fak JJ, Nishiuchi E, Rice CM, Darnell RB., Nat Commun 6(), 2015
PMID: 26602609
MicroRNA target prediction using thermodynamic and sequence curves.
Ghoshal A, Shankar R, Bagchi S, Grama A, Chaterji S., BMC Genomics 16(), 2015
PMID: 26608597
MicroRNA Expression in the Glaucomatous Retina.
Jayaram H, Cepurna WO, Johnson EC, Morrison JC., Invest Ophthalmol Vis Sci 56(13), 2015
PMID: 26720444
CancerNet: a database for decoding multilevel molecular interactions across diverse cancer types.
Meng X, Wang J, Yuan C, Li X, Zhou Y, Hofestädt R, Chen M., Oncogenesis 4(), 2015
PMID: 26690544
Non-coding yet non-trivial: a review on the computational genomics of lincRNAs.
Ching T, Masaki J, Weirather J, Garmire LX., BioData Min 8(), 2015
PMID: 26697116
G-A variant in miR-200c binding site of EFNA1 alters susceptibility to gastric cancer.
Li Y, Nie Y, Cao J, Tu S, Lin Y, Du Y, Li Y., Mol Carcinog 53(3), 2014
PMID: 23065816
BCR-ABL/GATA1/miR-138 mini circuitry contributes to the leukemogenesis of chronic myeloid leukemia.
Xu C, Fu H, Gao L, Wang L, Wang W, Li J, Li Y, Dou L, Gao X, Luo X, Jing Y, Chim CS, Zheng X, Yu L., Oncogene 33(1), 2014
PMID: 23208504
Identification and characterization of microRNAs in pearl oyster Pinctada martensii by Solexa deep sequencing.
Jiao Y, Zheng Z, Du X, Wang Q, Huang R, Deng Y, Shi S, Zhao X., Mar Biotechnol (NY) 16(1), 2014
PMID: 23877619
Post-transcriptional regulation of DNA damage-responsive gene expression.
McKay BC., Antioxid Redox Signal 20(4), 2014
PMID: 23905704
Regulatory role of miRNAs in polyamine gene expression in the prefrontal cortex of depressed suicide completers.
Lopez JP, Fiori LM, Gross JA, Labonte B, Yerko V, Mechawar N, Turecki G., Int J Neuropsychopharmacol 17(1), 2014
PMID: 24025154
MicroRNA-494 reduces DJ-1 expression and exacerbates neurodegeneration.
Xiong R, Wang Z, Zhao Z, Li H, Chen W, Zhang B, Wang L, Wu L, Li W, Ding J, Chen S., Neurobiol Aging 35(3), 2014
PMID: 24269020
Binding and processing of small dsRNA molecules by the class 1 RNase III protein encoded by sweet potato chlorotic stunt virus.
Weinheimer I, Boonrod K, Moser M, Wassenegger M, Krczal G, Butcher SJ, Valkonen JP., J Gen Virol 95(pt 2), 2014
PMID: 24187016
Prometastatic GPCR CD97 is a direct target of tumor suppressor microRNA-126.
Lu YY, Sweredoski MJ, Huss D, Lansford R, Hess S, Tirrell DA., ACS Chem Biol 9(2), 2014
PMID: 24274104
HITS-CLIP and PAR-CLIP advance viral miRNA targetome analysis.
Haecker I, Renne R., Crit Rev Eukaryot Gene Expr 24(2), 2014
PMID: 24940765
mirMark: a site-level and UTR-level classifier for miRNA target prediction.
Menor M, Ching T, Zhu X, Garmire D, Garmire LX., Genome Biol 15(10), 2014
PMID: 25344330
Regulation of MAP kinase signaling cascade by microRNAs in Oryza sativa.
Raghuram B, Sheikh AH, Sinha AK., Plant Signal Behav 9(10), 2014
PMID: 25482813
Transcriptome-wide discovery of microRNA binding sites in human brain.
Boudreau RL, Jiang P, Gilmore BL, Spengler RM, Tirabassi R, Nelson JA, Ross CA, Xing Y, Davidson BL., Neuron 81(2), 2014
PMID: 24389009
Next generation sequencing reveals regulation of distinct Aedes microRNAs during chikungunya virus development.
Shrinet J, Jain S, Jain J, Bhatnagar RK, Sunil S., PLoS Negl Trop Dis 8(1), 2014
PMID: 24421911
OncomiRdbB: a comprehensive database of microRNAs and their targets in breast cancer.
Khurana R, Verma VK, Rawoof A, Tiwari S, Nair RA, Mahidhara G, Idris MM, Clarke AR, Kumar LD., BMC Bioinformatics 15(), 2014
PMID: 24428888
MiR-133b is frequently decreased in gastric cancer and its overexpression reduces the metastatic potential of gastric cancer cells.
Zhao Y, Huang J, Zhang L, Qu Y, Li J, Yu B, Yan M, Yu Y, Liu B, Zhu Z., BMC Cancer 14(), 2014
PMID: 24443799
Plant miRNAome and antiviral resistance: a retrospective view and prospective challenges.
Ramesh SV, Ratnaparkhe MB, Kumawat G, Gupta GK, Husain SM., Virus Genes 48(1), 2014
PMID: 24445902
lncRNAMap: a map of putative regulatory functions in the long non-coding transcriptome.
Chan WL, Huang HD, Chang JG., Comput Biol Chem 50(), 2014
PMID: 24525374
Extracting rate changes in transcriptional regulation from MEDLINE abstracts.
Liu W, Miao K, Li G, Chang K, Zheng J, Rajapakse JC., BMC Bioinformatics 15 Suppl 2(), 2014
PMID: 24564647
The panorama of miRNA-mediated mechanisms in mammalian cells.
Stroynowska-Czerwinska A, Fiszer A, Krzyzosiak WJ., Cell Mol Life Sci 71(12), 2014
PMID: 24468964
Extensive sequence variation in the 3' untranslated region of the KRAS gene in lung and ovarian cancer cases.
Kim M, Chen X, Chin LJ, Paranjape T, Speed WC, Kidd KK, Zhao H, Weidhaas JB, Slack FJ., Cell Cycle 13(6), 2014
PMID: 24552817
MicroRNA profile analysis of a feline kidney cell line before and after infection with mink enteritis virus.
Sun JZ, Wang J, Wang S, Yuan D, Birame BM, Li Z, Yi B, Liu W., Gene 539(2), 2014
PMID: 24525403
Transcriptional consequences of schizophrenia candidate miR-137 manipulation in human neural progenitor cells.
Hill MJ, Donocik JG, Nuamah RA, Mein CA, Sainz-Fuertes R, Bray NJ., Schizophr Res 153(1-3), 2014
PMID: 24556472
Common features of microRNA target prediction tools.
Peterson SM, Thompson JA, Ufkin ML, Sathyanarayana P, Liaw L, Congdon CB., Front Genet 5(), 2014
PMID: 24600468
A non-canonical plant microRNA target site.
Brousse C, Liu Q, Beauclair L, Deremetz A, Axtell MJ, Bouché N., Nucleic Acids Res 42(8), 2014
PMID: 24561804
Systematic design and functional analysis of artificial microRNAs.
Arroyo JD, Gallichotte EN, Tewari M., Nucleic Acids Res 42(9), 2014
PMID: 24598260
A computational model for non-conserved mature miRNAs from the rice genome.
Kumar SP, Pandya HA, Jasrai YT., SAR QSAR Environ Res 25(3), 2014
PMID: 24601753
Global characterization of microRNAs in Trichomonas gallinae.
Xu MJ, Qiu SB, Nisbet AJ, Fu JH, Shao CC, Zhu XQ., Parasit Vectors 7(), 2014
PMID: 24612519
Identification of candidate miRNA biomarkers from miRNA regulatory network with application to prostate cancer.
Zhang W, Zang J, Jing X, Sun Z, Yan W, Yang D, Shen B, Guo F., J Transl Med 12(), 2014
PMID: 24618011
Identification and characterization of a subset of microRNAs in wheat (Triticum aestivum L.).
Su C, Yang X, Gao S, Tang Y, Zhao C, Li L., Genomics 103(4), 2014
PMID: 24667243
Mining the 3'UTR of autism-implicated genes for SNPs perturbing microRNA regulation.
Vaishnavi V, Manikandan M, Munirajan AK., Genomics Proteomics Bioinformatics 12(2), 2014
PMID: 24747189
Comparative analysis of microRNA profiles between adult Ascaris lumbricoides and Ascaris suum.
Shao CC, Xu MJ, Alasaad S, Song HQ, Peng L, Tao JP, Zhu XQ., BMC Vet Res 10(), 2014
PMID: 24766827
Axl-altered microRNAs regulate tumorigenicity and gefitinib resistance in lung cancer.
Wang Y, Xia H, Zhuang Z, Miao L, Chen X, Cai H., Cell Death Dis 5(), 2014
PMID: 24832599
Hsa-miRNA-765 as a key mediator for inhibiting growth, migration and invasion in fulvestrant-treated prostate cancer.
Leung YK, Chan QK, Ng CF, Ma FM, Tse HM, To KF, Maranchie J, Ho SM, Lau KM., PLoS One 9(5), 2014
PMID: 24837491
Blood feeding and Plasmodium infection alters the miRNome of Anopheles stephensi.
Jain S, Rana V, Shrinet J, Sharma A, Tridibes A, Sunil S, Bhatnagar RK., PLoS One 9(5), 2014
PMID: 24866389
Identifying microRNA targets in different gene regions.
Xu W, San Lucas A, Wang Z, Liu Y., BMC Bioinformatics 15 Suppl 7(), 2014
PMID: 25077573
miR-1202 is a primate-specific and brain-enriched microRNA involved in major depression and antidepressant treatment.
Lopez JP, Lim R, Cruceanu C, Crapper L, Fasano C, Labonte B, Maussion G, Yang JP, Yerko V, Vigneault E, El Mestikawy S, Mechawar N, Pavlidis P, Turecki G., Nat Med 20(7), 2014
PMID: 24908571
MicroRNA-296-5p (miR-296-5p) functions as a tumor suppressor in prostate cancer by directly targeting Pin1.
Lee KH, Lin FC, Hsu TI, Lin JT, Guo JH, Tsai CH, Lee YC, Lee YC, Chen CL, Hsiao M, Lu PJ., Biochim Biophys Acta 1843(9), 2014
PMID: 24915000
Crosstalk between glioma-initiating cells and endothelial cells drives tumor progression.
Jeon HM, Kim SH, Jin X, Park JB, Kim SH, Joshi K, Nakano I, Kim H., Cancer Res 74(16), 2014
PMID: 24962027
Thermal plasticity of the miRNA transcriptome during Senegalese sole development.
Campos C, Sundaram AY, Valente LM, Conceição LE, Engrola S, Fernandes JM., BMC Genomics 15(), 2014
PMID: 24966054
StemSearch: RNA search tool based on stem identification and indexing.
Milo N, Yogev S, Ziv-Ukelson M., Methods 69(3), 2014
PMID: 25009129
MiR-153 targets the nuclear factor-1 family and protects against teratogenic effects of ethanol exposure in fetal neural stem cells.
Tsai PC, Bake S, Balaraman S, Rawlings J, Holgate RR, Dubois D, Miranda RC., Biol Open 3(8), 2014
PMID: 25063196
Current understanding of the role of microRNAs in spinocerebellar ataxias.
Koscianska E, Krzyzosiak WJ., Cerebellum Ataxias 1(), 2014
PMID: 26331031
Identifying a polymorphic 'switch' that influences miRNAs' regulation of a myasthenia gravis risk pathway.
Yang L, Wang J, Sun X, Cao Y, Ning S, Zhang H, Chen L, Li R, Tian Q, Wang L, Wang W, Li X., PLoS One 9(8), 2014
PMID: 25118158
Hsa-miR-195 targets PCMT1 in hepatocellular carcinoma that increases tumor life span.
Amer M, Elhefnawi M, El-Ahwany E, Awad AF, Gawad NA, Zada S, Tawab FM., Tumour Biol 35(11), 2014
PMID: 25119594
MicroRNA-570-3p regulates HuR and cytokine expression in airway epithelial cells.
Roff AN, Craig TJ, August A, Stellato C, Ishmael FT., Am J Clin Exp Immunol 3(2), 2014
PMID: 25143867
A mouse polyomavirus-encoded microRNA targets the cellular apoptosis pathway through Smad2 inhibition.
Sung CK, Yim H, Andrews E, Benjamin TL., Virology 468-470(), 2014
PMID: 25146733
Selective targeting of KRAS-mutant cells by miR-126 through repression of multiple genes essential for the survival of KRAS-mutant cells.
Hara T, Jones MF, Subramanian M, Li XL, Ou O, Zhu Y, Yang Y, Wakefield LM, Hussain SP, Gaedcke J, Ried T, Luo J, Caplen NJ, Lal A., Oncotarget 5(17), 2014
PMID: 25245095
Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus).
Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M., BMC Genomics 15(), 2014
PMID: 25199625
Identification of 14-3-3β gene as a novel miR-152 target using a proteome-based approach.
Jasinski-Bergner S, Stehle F, Gonschorek E, Kalich J, Schulz K, Huettelmaier S, Braun J, Seliger B., J Biol Chem 289(45), 2014
PMID: 25228695
Mosquito-specific microRNA-1174 targets serine hydroxymethyltransferase to control key functions in the gut.
Liu S, Lucas KJ, Roy S, Ha J, Raikhel AS., Proc Natl Acad Sci U S A 111(40), 2014
PMID: 25246546
CD49f-positive testicular cells in Saanen dairy goat were identified as spermatogonia-like cells by miRNA profiling analysis.
Wu J, Liao M, Zhu H, Kang K, Mu H, Song W, Niu Z, He X, Bai C, Li G, Li X, Hua J., J Cell Biochem 115(10), 2014
PMID: 24817091
MicroRNAs as predictive biomarkers and therapeutic targets in prostate cancer.
Wen X, Deng FM, Wang J., Am J Clin Exp Urol 2(3), 2014
PMID: 25374924
Dissecting the mechanism of carotid atherosclerosis from the perspective of regulation.
Lin M, Zhao L, Zhao W, Weng J., Int J Mol Med 34(6), 2014
PMID: 25318463
Cellular microRNAs up-regulate transcription via interaction with promoter TATA-box motifs.
Zhang Y, Fan M, Zhang X, Huang F, Wu K, Zhang J, Liu J, Huang Z, Luo H, Tao L, Zhang H., RNA 20(12), 2014
PMID: 25336585
A genetic variant of miR-148a binding site in the SCRN1 3'-UTR is associated with susceptibility and prognosis of gastric cancer.
Song P, Zhu H, Zhang D, Chu H, Wu D, Kang M, Wang M, Gong W, Zhou J, Zhang Z, Zhao Q., Sci Rep 4(), 2014
PMID: 25399950
MicroRNA-9 controls dendritic development by targeting REST.
Giusti SA, Vogl AM, Brockmann MM, Vercelli CA, Rein ML, Trümbach D, Wurst W, Cazalla D, Stein V, Deussing JM, Refojo D., Elife 3(), 2014
PMID: 25406064
microPIR2: a comprehensive database for human-mouse comparative study of microRNA-promoter interactions.
Piriyapongsa J, Bootchai C, Ngamphiw C, Tongsima S., Database (Oxford) 2014(), 2014
PMID: 25425035
MicroRNA miR-320a and miR-140 inhibit mink enteritis virus infection by repression of its receptor, feline transferrin receptor.
Sun JZ, Wang J, Wang S, Yuan D, Li Z, Yi B, Hou Q, Mao Y, Liu W., Virol J 11(), 2014
PMID: 25465595
A Computational Approach for Predicting Role of Human MicroRNAs in MERS-CoV Genome.
Hasan MM, Akter R, Ullah MS, Abedin MJ, Ullah GM, Hossain MZ., Adv Bioinformatics 2014(), 2014
PMID: 25610462
MicroRNA-24 regulates XIAP to reduce the apoptosis threshold in cancer cells.
Xie Y, Tobin LA, Camps J, Wangsa D, Yang J, Rao M, Witasp E, Awad KS, Yoo N, Ried T, Kwong KF., Oncogene 32(19), 2013
PMID: 22733138
A reversed framework for the identification of microRNA-target pairs in plants.
Shao C, Chen M, Meng Y., Brief Bioinform 14(3), 2013
PMID: 22811545
Small RNAs of Sequoia sempervirens during rejuvenation and phase change.
Chen YT, Shen CH, Lin WD, Chu HA, Huang BL, Kuo CI, Yeh KW, Huang LC, Chang IF., Plant Biol (Stuttg) 15(1), 2013
PMID: 23016572
MicroRNA-10A* and MicroRNA-21 modulate endothelial progenitor cell senescence via suppressing high-mobility group A2.
Zhu S, Deng S, Ma Q, Zhang T, Jia C, Zhuo D, Yang F, Wei J, Wang L, Dykxhoorn DM, Hare JM, Goldschmidt-Clermont PJ, Dong C., Circ Res 112(1), 2013
PMID: 23072816
Insect microRNAs: biogenesis, expression profiling and biological functions.
Lucas K, Raikhel AS., Insect Biochem Mol Biol 43(1), 2013
PMID: 23165178
Genetic variation in a hsa-let-7 binding site in RAD52 is associated with breast cancer susceptibility.
Jiang Y, Qin Z, Hu Z, Guan X, Wang Y, He Y, Xue J, Liu X, Chen J, Dai J, Jin G, Ma H, Wang S, Shen H., Carcinogenesis 34(3), 2013
PMID: 23188672
Identification of microRNAs regulated by isothiocyanates and association of polymorphisms inside their target sites with risk of sporadic colorectal cancer.
Slaby O, Sachlova M, Brezkova V, Hezova R, Kovarikova A, Bischofová S, Sevcikova S, Bienertova-Vasku J, Vasku A, Svoboda M, Vyzula R., Nutr Cancer 65(2), 2013
PMID: 23441612
Comparative profiling of microRNAs in male and female adults of Ascaris suum.
Xu MJ, Fu JH, Nisbet AJ, Huang SY, Zhou DH, Lin RQ, Song HQ, Zhu XQ., Parasitol Res 112(3), 2013
PMID: 23306386
Polymorphisms in microRNA target sites influence susceptibility to schizophrenia by altering the binding of miRNAs to their targets.
Gong Y, Wu CN, Xu J, Feng G, Xing QH, Fu W, Li C, He L, Zhao XZ., Eur Neuropsychopharmacol 23(10), 2013
PMID: 23332465
Identification of Dirofilaria immitis miRNA using illumina deep sequencing.
Fu Y, Lan J, Wu X, Yang D, Zhang Z, Nie H, Hou R, Zhang R, Zheng W, Xie Y, Yan N, Yang Z, Wang C, Luo L, Liu L, Gu X, Wang S, Peng X, Yang G., Vet Res 44(), 2013
PMID: 23331513
miR-133a regulates vitamin K 2,3-epoxide reductase complex subunit 1 (VKORC1), a key protein in the vitamin K cycle.
Pérez-Andreu V, Teruel R, Corral J, Roldán V, García-Barberá N, Salloum-Asfar S, Gómez-Lechón MJ, Bourgeois S, Deloukas P, Wadelius M, Vicente V, González-Conejero R, Martínez C., Mol Med 18(), 2013
PMID: 23154637
T cell post-transcriptional miRNA-mRNA interaction networks identify targets associated with susceptibility/resistance to collagen-induced arthritis.
Donate PB, Fornari TA, Macedo C, Cunha TM, Nascimento DC, Sakamoto-Hojo ET, Donadi EA, Cunha FQ, Passos GA., PLoS One 8(1), 2013
PMID: 23359619
Identification and characterization of microRNAs in the pancreatic fluke Eurytrema pancreaticum.
Xu MJ, Wang CR, Huang SY, Fu JH, Zhou DH, Chang QC, Zheng X, Zhu XQ., Parasit Vectors 6(), 2013
PMID: 23351883
Transcribed pseudogene ψPPM1K generates endogenous siRNA to suppress oncogenic cell growth in hepatocellular carcinoma.
Chan WL, Yuo CY, Yang WK, Hung SY, Chang YS, Chiu CC, Yeh KT, Huang HD, Chang JG., Nucleic Acids Res 41(6), 2013
PMID: 23376929
Analysis of the NCI-60 dataset for cancer-related microRNA and mRNA using expression profiles.
Weng CW, Lee SC, Lee YL, Ng KL., Comput Biol Chem 44(), 2013
PMID: 23499870
MicroRNAs and their putative targets in Brassica napus seed maturation.
Huang D, Koh C, Feurtado JA, Tsang EW, Cutler AJ., BMC Genomics 14(), 2013
PMID: 23448243
The impact of 3'UTR variants on differential expression of candidate cancer susceptibility genes.
Skeeles LE, Fleming JL, Mahler KL, Toland AE., PLoS One 8(3), 2013
PMID: 23472213
Whole-genome thermodynamic analysis reduces siRNA off-target effects.
Chen X, Liu P, Chou HH., PLoS One 8(3), 2013
PMID: 23484018
Online resources for miRNA analysis.
Vlachos IS, Hatzigeorgiou AG., Clin Biochem 46(10-11), 2013
PMID: 23518312
Effects of vitamin E on expressions of eight microRNAs in the liver of Nile tilapia (Oreochromis niloticus).
Tang XL, Xu MJ, Li ZH, Pan Q, Fu JH., Fish Shellfish Immunol 34(6), 2013
PMID: 23542605
ALPK1 genetic regulation and risk in relation to gout.
Ko AM, Tu HP, Liu TT, Chang JG, Yuo CY, Chiang SL, Chang SJ, Liu YF, Ko AM, Lee CH, Lee CP, Chang CM, Tsai SF, Ko YC., Int J Epidemiol 42(2), 2013
PMID: 23569188
Co-regulation of intragenic microRNA miR-153 and its host gene Ia-2 β: identification of miR-153 target genes with functions related to IA-2β in pancreas and brain.
Mandemakers W, Abuhatzira L, Xu H, Caromile LA, Hébert SS, Snellinx A, Morais VA, Matta S, Cai T, Notkins AL, De Strooper B., Diabetologia 56(7), 2013
PMID: 23595248
Genes involved in the transition from normal epithelium to intraepithelial neoplasia are associated with colorectal cancer patient survival.
Shi X, Zhang Y, Cao B, Lu N, Feng L, Di X, Han N, Luo C, Wang G, Cheng S, Zhang K., Biochem Biophys Res Commun 435(2), 2013
PMID: 23628414
Antiviral Stratagems Against HIV-1 Using RNA Interference (RNAi) Technology.
Vlachakis D, Tsiliki G, Pavlopoulou A, Roubelakis MG, Tsaniras SC, Kossida S., Evol Bioinform Online 9(), 2013
PMID: 23761954
Comparative characterization of microRNA profiles of different genotypes of Toxoplasma gondii.
Xu MJ, Zhou DH, Huang SY, Zhao FR, Nisbet AJ, Lin RQ, Song HQ, Zhu XQ., Parasitology 140(9), 2013
PMID: 23714365
Search for signatures in miRNAs associated with cancer.
Kothandan R, Biswas S., Bioinformation 9(10), 2013
PMID: 23861569
Intestinal Salmonella typhimurium infection leads to miR-29a induced caveolin 2 regulation.
Hoeke L, Sharbati J, Pawar K, Keller A, Einspanier R, Sharbati S., PLoS One 8(6), 2013
PMID: 23826261
Deep parallel sequencing reveals conserved and novel miRNAs in gill and hepatopancreas of giant freshwater prawn.
Tan TT, Chen M, Harikrishna JA, Khairuddin N, Mohd Shamsudin MI, Zhang G, Bhassu S., Fish Shellfish Immunol 35(4), 2013
PMID: 23816854
miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
Bari A, Orazova S, Ivashchenko A., Biomed Res Int 2013(), 2013
PMID: 23936788
Increased BCAR1 predicts poor outcomes of non-small cell lung cancer in multiple-center patients.
Deng B, Sun Z, Jason W, Yang P., Ann Surg Oncol 20 Suppl 3(), 2013
PMID: 23904007
MicroRNA-31 predicts the presence of lymph node metastases and survival in patients with lung adenocarcinoma.
Meng W, Ye Z, Cui R, Perry J, Dedousi-Huebner V, Huebner A, Wang Y, Li B, Volinia S, Nakanishi H, Kim T, Suh SS, Ayers LW, Ross P, Croce CM, Chakravarti A, Jin VX, Lautenschlaeger T., Clin Cancer Res 19(19), 2013
PMID: 23946296
miR-1247 functions by targeting cartilage transcription factor SOX9.
Martinez-Sanchez A, Murphy CL., J Biol Chem 288(43), 2013
PMID: 24014021
Regulation of the unfolded protein response by microRNAs.
Bartoszewska S, Kochan K, Madanecki P, Piotrowski A, Ochocka R, Collawn JF, Bartoszewski R., Cell Mol Biol Lett 18(4), 2013
PMID: 24092331
Walking the interactome to identify human miRNA-disease associations through the functional link between miRNA targets and disease genes.
Shi H, Xu J, Zhang G, Xu L, Li C, Wang L, Zhao Z, Jiang W, Guo Z, Li X., BMC Syst Biol 7(), 2013
PMID: 24103777
Continuing analysis of microRNA origins: Formation from transposable element insertions and noncoding RNA mutations.
Roberts JT, Cooper EA, Favreau CJ, Howell JS, Lane LG, Mills JE, Newman DC, Perry TJ, Russell ME, Wallace BM, Borchert GM., Mob Genet Elements 3(6), 2013
PMID: 24475369
MicroRNAs: fundamental regulators of gene expression in major affective disorders and suicidal behavior?
Serafini G, Pompili M, Hansen KF, Obrietan K, Dwivedi Y, Amore M, Shomron N, Girardi P., Front Cell Neurosci 7(), 2013
PMID: 24298237
A useful method of identifying of miRNAs which can down-regulate Zeb-2.
Oba S, Mizutani T, Suzuki E, Nishimatsu H, Takahashi M, Ogawa Y, Kimura K, Hirata Y, Fujita T., BMC Res Notes 6(), 2013
PMID: 24245745
Structural analysis of microRNA-target interaction by sequential seed mutagenesis and stem-loop 3' RACE.
Bohmer M, Sharbati J, Zur Bruegge J, Einspanier R, Sharbati S., PLoS One 8(11), 2013
PMID: 24282594
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