A method for linking computed image features to histological semantics in neuropathology
Lessmann B, Nattkemper TW, Hans VH, Degenhard A (2007)
Journal of Biomedical Informatics 40(6): 631-641.
Zeitschriftenaufsatz
| Veröffentlicht | Englisch
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Autor*in
Lessmann, B.;
Nattkemper, Tim WilhelmUniBi ;
Hans, V. H.;
Degenhard, A.
Einrichtung
Abstract / Bemerkung
In medical image analysis the image content is often represented by features computed from the pixel matrix in order to support the development of improved clinical diagnosis systems. These features need to be interpreted and understood at a clinical level of understanding Many features are of abstract nature, as for instance features derived from a wavelet transform. The interpretation and analysis of such features are difficult. This lack of coincidence between computed features and their meaning for a user in a given situation is commonly referred to as the semantic gap. In this work, we propose a method for feature analysis and interpretation based oil the simultaneous visualization of feature and image domain. Histopathological images of meningiomas WHO (World Health Organization) grade I are represented by features derived from color transforms and the Discrete Wavelet Transform. The wavelet-based feature space is then visualized and explored using unsupervised machine learning methods. We show how to analyze and select features according to their relevance for the description of clinically relevant characteristics. (C) 2007 Elsevier Inc. All rights reserved.
Stichworte
Self Organizing Map;
Discrete Wavelet Transform;
feature selection;
histopathology;
image analysis
Erscheinungsjahr
2007
Zeitschriftentitel
Journal of Biomedical Informatics
Band
40
Ausgabe
6
Seite(n)
631-641
ISSN
1532-0464
Page URI
https://pub.uni-bielefeld.de/record/1630749
Zitieren
Lessmann B, Nattkemper TW, Hans VH, Degenhard A. A method for linking computed image features to histological semantics in neuropathology. Journal of Biomedical Informatics. 2007;40(6):631-641.
Lessmann, B., Nattkemper, T. W., Hans, V. H., & Degenhard, A. (2007). A method for linking computed image features to histological semantics in neuropathology. Journal of Biomedical Informatics, 40(6), 631-641. https://doi.org/10.1016/j.jbi.2007.06.007
Lessmann, B., Nattkemper, Tim Wilhelm, Hans, V. H., and Degenhard, A. 2007. “A method for linking computed image features to histological semantics in neuropathology”. Journal of Biomedical Informatics 40 (6): 631-641.
Lessmann, B., Nattkemper, T. W., Hans, V. H., and Degenhard, A. (2007). A method for linking computed image features to histological semantics in neuropathology. Journal of Biomedical Informatics 40, 631-641.
Lessmann, B., et al., 2007. A method for linking computed image features to histological semantics in neuropathology. Journal of Biomedical Informatics, 40(6), p 631-641.
B. Lessmann, et al., “A method for linking computed image features to histological semantics in neuropathology”, Journal of Biomedical Informatics, vol. 40, 2007, pp. 631-641.
Lessmann, B., Nattkemper, T.W., Hans, V.H., Degenhard, A.: A method for linking computed image features to histological semantics in neuropathology. Journal of Biomedical Informatics. 40, 631-641 (2007).
Lessmann, B., Nattkemper, Tim Wilhelm, Hans, V. H., and Degenhard, A. “A method for linking computed image features to histological semantics in neuropathology”. Journal of Biomedical Informatics 40.6 (2007): 631-641.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
20 Zitationen in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
The diagnostic value of texture analysis in predicting WHO grades of meningiomas based on ADC maps: an attempt using decision tree and decision forest.
Lu Y, Liu L, Luan S, Xiong J, Geng D, Yin B., Eur Radiol 29(3), 2019
PMID: 30088065
Lu Y, Liu L, Luan S, Xiong J, Geng D, Yin B., Eur Radiol 29(3), 2019
PMID: 30088065
Effect of radiation dose reduction on texture measures of trabecular bone microstructure: an in vitro study.
Mookiah MRK, Baum T, Mei K, Kopp FK, Kaissis G, Foehr P, Noel PB, Kirschke JS, Subburaj K., J Bone Miner Metab 36(3), 2018
PMID: 28389933
Mookiah MRK, Baum T, Mei K, Kopp FK, Kaissis G, Foehr P, Noel PB, Kirschke JS, Subburaj K., J Bone Miner Metab 36(3), 2018
PMID: 28389933
Nuclear spatial and spectral features based evolutionary method for meningioma subtypes classification in histopathology.
Fatima K, Majeed H, Irshad H., Microsc Res Tech 80(8), 2017
PMID: 28379628
Fatima K, Majeed H, Irshad H., Microsc Res Tech 80(8), 2017
PMID: 28379628
CD30 cell graphs of Hodgkin lymphoma are not scale-free--an image analysis approach.
Schäfer H, Schäfer T, Ackermann J, Dichter N, Döring C, Hartmann S, Hansmann ML, Koch I., Bioinformatics 32(1), 2016
PMID: 26363177
Schäfer H, Schäfer T, Ackermann J, Dichter N, Döring C, Hartmann S, Hansmann ML, Koch I., Bioinformatics 32(1), 2016
PMID: 26363177
Automated classification of brain tumor type in whole-slide digital pathology images using local representative tiles.
Barker J, Hoogi A, Depeursinge A, Rubin DL., Med Image Anal 30(), 2016
PMID: 26854941
Barker J, Hoogi A, Depeursinge A, Rubin DL., Med Image Anal 30(), 2016
PMID: 26854941
Automated prostate tissue referencing for cancer detection and diagnosis.
Kwak JT, Hewitt SM, Kajdacsy-Balla AA, Sinha S, Bhargava R., BMC Bioinformatics 17(1), 2016
PMID: 27247129
Kwak JT, Hewitt SM, Kajdacsy-Balla AA, Sinha S, Bhargava R., BMC Bioinformatics 17(1), 2016
PMID: 27247129
Out-of-Sample Extrapolation utilizing Semi-Supervised Manifold Learning (OSE-SSL): Content Based Image Retrieval for Histopathology Images.
Sparks R, Madabhushi A., Sci Rep 6(), 2016
PMID: 27264985
Sparks R, Madabhushi A., Sci Rep 6(), 2016
PMID: 27264985
A multiresolution clinical decision support system based on fractal model design for classification of histological brain tumours.
Al-Kadi OS., Comput Med Imaging Graph 41(), 2015
PMID: 24962336
Al-Kadi OS., Comput Med Imaging Graph 41(), 2015
PMID: 24962336
Influence of Texture and Colour in Breast TMA Classification.
Fernández-Carrobles MM, Bueno G, Déniz O, Salido J, García-Rojo M, González-López L., PLoS One 10(10), 2015
PMID: 26513238
Fernández-Carrobles MM, Bueno G, Déniz O, Salido J, García-Rojo M, González-López L., PLoS One 10(10), 2015
PMID: 26513238
A new texture and shape based technique for improving meningioma classification.
Fatima K, Arooj A, Majeed H., Microsc Res Tech 77(11), 2014
PMID: 25060536
Fatima K, Arooj A, Majeed H., Microsc Res Tech 77(11), 2014
PMID: 25060536
Approaches to automatic parameter fitting in a microscopy image segmentation pipeline: An exploratory parameter space analysis.
Held C, Nattkemper T, Palmisano R, Wittenberg T., J Pathol Inform 4(suppl), 2013
PMID: 23766941
Held C, Nattkemper T, Palmisano R, Wittenberg T., J Pathol Inform 4(suppl), 2013
PMID: 23766941
Pathology imaging informatics for quantitative analysis of whole-slide images.
Kothari S, Phan JH, Stokes TH, Wang MD., J Am Med Inform Assoc 20(6), 2013
PMID: 23959844
Kothari S, Phan JH, Stokes TH, Wang MD., J Am Med Inform Assoc 20(6), 2013
PMID: 23959844
Breast cancer characterization based on image classification of tissue sections visualized under low magnification.
Loukas C, Kostopoulos S, Tanoglidi A, Glotsos D, Sfikas C, Cavouras D., Comput Math Methods Med 2013(), 2013
PMID: 24069067
Loukas C, Kostopoulos S, Tanoglidi A, Glotsos D, Sfikas C, Cavouras D., Comput Math Methods Med 2013(), 2013
PMID: 24069067
Computer-aided diagnosis of skin lesions using conventional digital photography: a reliability and feasibility study.
Chang WY, Huang A, Yang CY, Lee CH, Chen YC, Wu TY, Chen GS., PLoS One 8(11), 2013
PMID: 24223698
Chang WY, Huang A, Yang CY, Lee CH, Chen YC, Wu TY, Chen GS., PLoS One 8(11), 2013
PMID: 24223698
Micro-structural tissue analysis for automatic histopathological image annotation.
Díaz G, Romero E., Microsc Res Tech 75(3), 2012
PMID: 21997952
Díaz G, Romero E., Microsc Res Tech 75(3), 2012
PMID: 21997952
Biological Interpretation of Morphological Patterns in Histopathological Whole-Slide Images.
Kothari S, Phan JH, Osunkoya AO, Wang MD., ACM BCB 2012(), 2012
PMID: 29568817
Kothari S, Phan JH, Osunkoya AO, Wang MD., ACM BCB 2012(), 2012
PMID: 29568817
A supervised visual model for finding regions of interest in basal cell carcinoma images.
Gutiérrez R, Gómez F, Roa-Peña L, Romero E., Diagn Pathol 6(), 2011
PMID: 21447178
Gutiérrez R, Gómez F, Roa-Peña L, Romero E., Diagn Pathol 6(), 2011
PMID: 21447178
Learning regions of interest from low level maps in virtual microscopy.
Romo D, Romero E, González F., Diagn Pathol 6 Suppl 1(), 2011
PMID: 21489193
Romo D, Romero E, González F., Diagn Pathol 6 Suppl 1(), 2011
PMID: 21489193
Automated diagnosis of oral cancer using higher order spectra features and local binary pattern: a comparative study.
Krishnan MM, Acharya UR, Chakraborty C, Ray AK., Technol Cancer Res Treat 10(5), 2011
PMID: 21895029
Krishnan MM, Acharya UR, Chakraborty C, Ray AK., Technol Cancer Res Treat 10(5), 2011
PMID: 21895029
Intelligent data analysis in biomedicine.
Holmes JH, Peek N., J Biomed Inform 40(6), 2007
PMID: 17959422
Holmes JH, Peek N., J Biomed Inform 40(6), 2007
PMID: 17959422
29 References
Daten bereitgestellt von Europe PubMed Central.
Statistical pattern recognition: a review
Jain, IEEE Trans Patt Anal Machine Intell 22(1), 2000
Jain, IEEE Trans Patt Anal Machine Intell 22(1), 2000
Content-based image retrieval systems at the end of the early years
Smeulders, IEEE Trans Patt Anal Machine Intell 22(12), 2000
Smeulders, IEEE Trans Patt Anal Machine Intell 22(12), 2000
AUTHOR UNKNOWN, 0
AUTHOR UNKNOWN, 0
AUTHOR UNKNOWN, 0
PicSOM—content-based image retrieval with self-organizing maps
Laaksonen, Patt Recogn Lett 22(), 2000
Laaksonen, Patt Recogn Lett 22(), 2000
AUTHOR UNKNOWN, 0
Histological heterogeneity of human glioblastomas investigated with an unsupervised neural network (SOM).
Iglesias-Rozas JR, Hopf N., Histol. Histopathol. 20(2), 2005
PMID: 15736037
Iglesias-Rozas JR, Hopf N., Histol. Histopathol. 20(2), 2005
PMID: 15736037
AUTHOR UNKNOWN, 0
Meningiomas
Louis, 2000
Louis, 2000
Intelligent decision support in pathomorphology.
Jelonek J, Krawiec K, Slowinski R, Szymas J., Pol J Pathol 50(2), 1999
PMID: 10481536
Jelonek J, Krawiec K, Slowinski R, Szymas J., Pol J Pathol 50(2), 1999
PMID: 10481536
Computer-assisted discrimination among malignant lymphomas and leukemia using immunophenotyping, intelligent image repositories, and telemicroscopy.
Foran DJ, Comaniciu D, Meer P, Goodell LA., IEEE Trans Inf Technol Biomed 4(4), 2000
PMID: 11206811
Foran DJ, Comaniciu D, Meer P, Goodell LA., IEEE Trans Inf Technol Biomed 4(4), 2000
PMID: 11206811
Hearn, 1997
Characterization of signals from multiscale edges
Mallat, IEEE Trans Patt Anal Machine Intell 14(), 1992
Mallat, IEEE Trans Patt Anal Machine Intell 14(), 1992
Ten lectures on wavelets
Daubechies, CBMS-NFS Series Appl Math SIAM (), 1991
Daubechies, CBMS-NFS Series Appl Math SIAM (), 1991
Mallat, 1999
Stollnitz, 1996
AUTHOR UNKNOWN, 0
AUTHOR UNKNOWN, 0
Wavelets as chromatin texture descriptors for the automated identification of neoplastic nuclei.
Van De Wouwer G, Weyn B, Scheunders P, Jacob W, Van Marck E, Van Dyck D., J Microsc 197(Pt 1), 2000
PMID: 10620145
Van De Wouwer G, Weyn B, Scheunders P, Jacob W, Van Marck E, Van Dyck D., J Microsc 197(Pt 1), 2000
PMID: 10620145
Texture features for image retrieval
Manjunath, 2002
Manjunath, 2002
Filtering for texture classification: a comparative study
Randen, IEEE Transactions on Pattern Analysis and Machine Intelligence 21(4), 1999
Randen, IEEE Transactions on Pattern Analysis and Machine Intelligence 21(4), 1999
Design and analysis of a content-based pathology image retrieval system.
Zheng L, Wetzel AW, Gilbertson J, Becich MJ., IEEE Trans Inf Technol Biomed 7(4), 2003
PMID: 15000351
Zheng L, Wetzel AW, Gilbertson J, Becich MJ., IEEE Trans Inf Technol Biomed 7(4), 2003
PMID: 15000351
Biorthogonal bases of compactly supported wavelets
Cohen, Comm Pure Appl Math 45(), 1992
Cohen, Comm Pure Appl Math 45(), 1992
The JPEG2000 still image coding system: an overview
Christopoulos, IEEE Trans on Consumer Electronics 46(), 2000
Christopoulos, IEEE Trans on Consumer Electronics 46(), 2000
Texture analysis and classification with tree-structured wavelet transform.
Chang T, Kuo CJ., IEEE Trans Image Process 2(4), 1993
PMID: 18296228
Chang T, Kuo CJ., IEEE Trans Image Process 2(4), 1993
PMID: 18296228
Statistical texture characterization from discrete wavelet representations.
Van de Wouwer G, Scheunders P, Van Dyck D., IEEE Trans Image Process 8(4), 1999
PMID: 18262903
Van de Wouwer G, Scheunders P, Van Dyck D., IEEE Trans Image Process 8(4), 1999
PMID: 18262903
A texture analysis approach to corrosion image classification
Livens, Microscopy, Microanalysis, Microstructures 7(2), 1996
Livens, Microscopy, Microanalysis, Microstructures 7(2), 1996
Kohonen, 1995
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