113 Publications
-
2026 | Journal Article | Published | PUB-ID: 3019654Full ribosomal operon sequencing of anaerobic gut fungi (phylum Neocallimastigomycota): insights on its markers and phylogenetic resolutionPUB | DOI
Young D, Stüer-Patowsky K, Huang L, Elshahed MS, Youssef NH, Hanafy R, Cheng Y, Moon CD, Soni P, Joshi A, Stabel M, et al. (2026)
IMA Fungus 17. -
2026 | Journal Article | E-pub. ahead of print | PUB-ID: 3016018
Impact of microbial consortia and fertilization regimes on the soil microbiome in maize field trialsPUB | PDF | DOI | WoS | PubMed | Europe PMC
Kleinbölting N, Fiore A, Cangioli L, Visca A, Huang L, Hett J, Costanzo M, Sevi F, Tabacchioni S, Aprea G, Mengoni A, et al. (2026)
Scientific Reports . -
2026 | Report | Published | PUB-ID: 3016365Towards Federated, Certified Infrastructures for Sensitive Data Research in Germany and Europe with the de.NBI CloudPUB | DOI
Twardziok S, Barysch S-V, Braun M, Buchhalter I, Grüning B, Kraft P, Krüger J, Kuchenbecker L, Srikakulam SK, Lawerenz C, Sczyrba A, et al. (2026) . -
2025 | Journal Article | Published | PUB-ID: 3004098
subMG automates data submission for metagenomics studiesPUB | PDF | DOI | WoS | PubMed | Europe PMC
Tubbesing TJ, Schlüter A, Sczyrba A (2025)
BioData Mining 18(1): 38. -
2025 | Preprint | Published | PUB-ID: 3004099Enhancing multi-omic analyses through a federated microbiome analysis servicePUB | DOI
Rogers A, Bäuerle F, Beracochea M, Heidari A, Burridge M, Osterholz B, Sczyrba A, Shehu M, Tubbesing TJ, Wipat A (2025) . -
2024 | Journal Article | Published | PUB-ID: 2985402Breakdown of hardly degradable carbohydrates (lignocellulose) in a two-stage anaerobic digestion plant is favored in the main fermenterPUB | DOI
Heyer R, Hellwig P, Maus I, Walke D, Schlüter A, Hassa J, Sczyrba A, Tubbesing TJ, Klocke M, Mächtig T, Schallert K, et al. (2024)
Water Research 250: 121020. -
2023 | Journal Article | Published | PUB-ID: 2977923
Abundance, classification and genetic potential of Thaumarchaeota in metagenomes of European agricultural soils: a meta-analysisPUB | PDF | DOI | WoS | PubMed | Europe PMC
Nelkner J, Huang L, Lin TW, Schulz A, Osterholz B, Henke C, Blom J, Pühler A, Sczyrba A, Schlüter A (2023)
Environmental Microbiome 18(1): 26. -
2023 | Journal Article | Published | PUB-ID: 2983209
Uncovering Microbiome Adaptations in a Full-Scale Biogas Plant: Insights from MAG-Centric Metagenomics and MetaproteomicsPUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Hassa J, Tubbesing TJ, Maus I, Heyer R, Benndorf D, Effenberger M, Henke C, Osterholz B, Beckstette M, Pühler A, Sczyrba A, et al. (2023)
Microorganisms 11(10): 2412. -
2023 | Journal Article | Published | PUB-ID: 2984553Base4NFDI - Basic Services for NFDIPUB | DOI
Schimmler S, Altenhöner R, Bernard L, Fluck J, Klinger A, Lorenz S, Mathiak B, Miller B, Ritz R, Schörner-Sadenius T, Sczyrba A, et al. (2023)
Proceedings of the Conference on Research Data Infrastructure 1. -
2023 | Journal Article | Published | PUB-ID: 2984552Embedding the de.NBI Cloud in the National Research Data Infrastructure ActivitiesPUB | DOI
Hoffmann N, Maus I, Beier S, Belmann P, Krüger J, Tauch A, Goesmann A, Eils R, Bork P, Kohlbacher O, Kummer U, et al. (2023)
Proceedings of the Conference on Research Data Infrastructure 1. -
2023 | Journal Article | Published | PUB-ID: 2984551NFDI4Microbiota – national research data infrastructure for microbiota researchPUB | DOI
Förstner KU, Becker A, Blom J, Bork P, Clavel T, Dieckmann M, Goesmann A, Götz B, Gübitz T, Hufsky F, Jünemann S, et al. (2023)
Research Ideas and Outcomes 9. -
2023 | Journal Article | Published | PUB-ID: 2968667Reekeekee- and roodoodooviruses, two different Microviridae clades constituted by the smallest DNA phagesPUB | DOI | WoS | PubMed | Europe PMC
Olo Ndela E, Roux S, Henke C, Sczyrba A, Sime Ngando T, Varsani A, Enault F (2023)
Virus Evolution 9(1): veac123. -
2022 | Journal Article | Published | PUB-ID: 2969509Expansion of the global RNA virome reveals diverse clades of bacteriophagesPUB | DOI | WoS | PubMed | Europe PMC
Neri U, Wolf YI, Roux S, Camargo AP, Lee B, Kazlauskas D, Chen IM, Ivanova N, Zeigler Allen L, Paez-Espino D, Bryant DA, et al. (2022)
Cell 185(21): 4023-4037.e18. -
2022 | Journal Article | Published | PUB-ID: 2969511Thousands of small, novel genes predicted in global phage genomesPUB | DOI | WoS | PubMed | Europe PMC
Fremin BJ, Bhatt AS, Kyrpides NC, Sengupta A, Sczyrba A, Maria da Silva A, Buchan A, Gaudin A, Brune A, Hirsch AM, Neumann A, et al. (2022)
Cell Reports 39(12): 110984. -
2022 | Journal Article | Published | PUB-ID: 2967098Adaptation of a microbial community to demand-oriented biological methanationPUB | DOI | WoS | PubMed | Europe PMC
Khesali Aghtaei H, Püttker S, Maus I, Heyer R, Huang L, Sczyrba A, Reichl U, Benndorf D (2022)
Biotechnology for Biofuels and Bioproducts 15(1): 125. -
2022 | Journal Article | Published | PUB-ID: 2966286
Effect of Growth Media on the Diversity of Neocallimastigomycetes from Non-Rumen HabitatsPUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Joshi A, Young D, Huang L, Mosberger L, Munk B, Vinzelj J, Flad V, Sczyrba A, Griffith GW, Podmirseg SM, Warthmann R, et al. (2022)
Microorganisms 10(10): 1972. -
2022 | Journal Article | Published | PUB-ID: 2965465
Simultaneous Metabarcoding and Quantification of Neocallimastigomycetes from Environmental Samples: Insights into Community Composition and Novel LineagesPUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
Young D, Joshi A, Huang L, Munk B, Wurzbacher C, Youssef NH, Elshahed MS, Moon CD, Ochsenreither K, Griffith GW, Callaghan TM, et al. (2022)
Microorganisms 10(9): 1749. -
2022 | Book (Editor) | Published | PUB-ID: 2963745
Development and Operation of the Federated de.NBI Cloud: Contributions of the German Network for Bioinformatics InfrastructurePUB | PDF | DOI
Sczyrba A, German Network for Bioinformatics Infrastructure (de.NBI) (Eds) (2022)
Bielefeld: Center for Biotechnology, de.NBI Administration Office. -
2022 | Journal Article | Published | PUB-ID: 2962388Critical Assessment of Metagenome Interpretation: the second round of challengesPUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC | Preprint
Meyer F, Fritz A, Deng Z-L, Koslicki D, Lesker TR, Gurevich A, Robertson G, Alser M, Antipov D, Beghini F, Bertrand D, et al. (2022)
Nature Methods 19: 429-440. -
2021 | Journal Article | Published | PUB-ID: 2950292
Phytoplankton consortia as a blueprint for mutually beneficial eukaryote-bacteria ecosystems based on the biocoenosis of Botryococcus consortiaPUB | PDF | DOI | WoS | PubMed | Europe PMC | Preprint
Blifernez-Klassen O, Klassen V, Wibberg D, Cebeci E, Henke C, Rückert C, Chaudhari S, Rupp O, Blom J, Winkler A, Al-Dilaimi A, et al. (2021)
Scientific Reports 11(1): 1726.